RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KCNH5Q8NCM2 988 aa27■■□□□ 1.91
CDX1-202ENST00000616154 ARHGEF25Q86VW2 580 aa26.99■■□□□ 1.91
CDX1-202ENST00000616154 SBF2Q86WG5 1849 aa26.99■■□□□ 1.91
CDX1-202ENST00000616154 NFAT5O94916 1531 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 OVOS2A0A0G2JMS6 1433 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 OVOS2A0A0J9YW53 1432 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 OVOS2Q6IE36 1432 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 KTN1Q86UP2 1357 aaKnown RBP26.98■■□□□ 1.91
CDX1-202ENST00000616154 WDR17Q8IZU2 1322 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 TOM1L2Q6ZVM7 507 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 USP54Q70EL1 1684 aa26.98■■□□□ 1.91
CDX1-202ENST00000616154 AXIN2Q9Y2T1 843 aa26.97■■□□□ 1.91
CDX1-202ENST00000616154 ABCC6O95255 1503 aa26.96■■□□□ 1.91
CDX1-202ENST00000616154 RGPD3A6NKT7 1758 aaPredicted RBP26.96■■□□□ 1.91
CDX1-202ENST00000616154 RGPD4Q7Z3J3 1758 aa26.96■■□□□ 1.91
CDX1-202ENST00000616154 CARD11Q9BXL7 1154 aa26.94■■□□□ 1.9
CDX1-202ENST00000616154 DDB1Q16531 1140 aa26.93■■□□□ 1.9
CDX1-202ENST00000616154 CDCA7Q9BWT1 371 aaPredicted RBP26.92■■□□□ 1.9
CDX1-202ENST00000616154 PCGF6Q9BYE7 350 aa26.92■■□□□ 1.9
CDX1-202ENST00000616154 CD163L1Q9NR16 1453 aa26.92■■□□□ 1.9
CDX1-202ENST00000616154 SOX12O15370 315 aa26.91■■□□□ 1.9
CDX1-202ENST00000616154 USP31Q70CQ4 1352 aa26.9■■□□□ 1.9
CDX1-202ENST00000616154 TONSLQ96HA7 1378 aa26.9■■□□□ 1.9
CDX1-202ENST00000616154 NBPF14Q5TI25 921 aa26.9■■□□□ 1.9
CDX1-202ENST00000616154 CARD10Q9BWT7 1032 aa26.9■■□□□ 1.9
CDX1-202ENST00000616154 BCL9O00512 1426 aa26.88■■□□□ 1.89
CDX1-202ENST00000616154 LTN1O94822 1766 aa26.87■■□□□ 1.89
CDX1-202ENST00000616154 CSB-PGBD3P0DP91 1061 aa26.87■■□□□ 1.89
CDX1-202ENST00000616154 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.86■■□□□ 1.89
CDX1-202ENST00000616154 CCDC7Q96M83 1385 aa26.85■■□□□ 1.89
CDX1-202ENST00000616154 MARCH10Q8NA82 808 aaPredicted RBP26.85■■□□□ 1.89
CDX1-202ENST00000616154 PLSCR1O15162 318 aa26.84■■□□□ 1.89
CDX1-202ENST00000616154 TMC1Q8TDI8 760 aa26.84■■□□□ 1.89
CDX1-202ENST00000616154 BCL11BQ9C0K0 894 aaPredicted RBP26.84■■□□□ 1.89
CDX1-202ENST00000616154 EDC4Q6P2E9 1401 aaKnown RBP26.83■■□□□ 1.89
CDX1-202ENST00000616154 HDGFL2Q7Z4V5 671 aaPredicted RBP26.83■■□□□ 1.89
CDX1-202ENST00000616154 NME9Q86XW9 330 aa26.83■■□□□ 1.89
CDX1-202ENST00000616154 PUS7Q96PZ0 661 aaKnown RBP26.82■■□□□ 1.88
CDX1-202ENST00000616154 SLC12A5Q9H2X9 1139 aa26.81■■□□□ 1.88
CDX1-202ENST00000616154 TNS2Q63HR2 1409 aa26.79■■□□□ 1.88
CDX1-202ENST00000616154 PTF1AQ7RTS3 328 aa26.79■■□□□ 1.88
CDX1-202ENST00000616154 A0A1W2PP64 1363 aa26.79■■□□□ 1.88
CDX1-202ENST00000616154 EXOC5O00471 708 aa26.78■■□□□ 1.88
CDX1-202ENST00000616154 TERF2IPQ9NYB0 399 aa26.78■■□□□ 1.88
CDX1-202ENST00000616154 ERBB3P21860 1342 aa26.78■■□□□ 1.88
CDX1-202ENST00000616154 CLSPNQ9HAW4 1339 aa26.77■■□□□ 1.88
CDX1-202ENST00000616154 NINLQ9Y2I6 1382 aa26.75■■□□□ 1.87
CDX1-202ENST00000616154 NHSQ6T4R5 1651 aa26.74■■□□□ 1.87
CDX1-202ENST00000616154 TESK2Q96S53 571 aa26.74■■□□□ 1.87
CDX1-202ENST00000616154 CASZ1Q86V15 1759 aa26.74■■□□□ 1.87
CDX1-202ENST00000616154 PROM2Q8N271 834 aa26.71■■□□□ 1.87
CDX1-202ENST00000616154 SPON1Q9HCB6 807 aa26.71■■□□□ 1.87
CDX1-202ENST00000616154 ANO8Q9HCE9 1232 aaPredicted RBP26.71■■□□□ 1.87
CDX1-202ENST00000616154 NLRP2Q9NX02 1062 aa26.71■■□□□ 1.87
CDX1-202ENST00000616154 FAM208AQ9UK61 1670 aaKnown RBP26.71■■□□□ 1.87
CDX1-202ENST00000616154 ANKRD24Q8TF21 1146 aa26.7■■□□□ 1.87
CDX1-202ENST00000616154 ST20-MTHFSA0A0A6YYL1 179 aa26.69■■□□□ 1.86
CDX1-202ENST00000616154 KCNQ2O43526 872 aa26.69■■□□□ 1.86
CDX1-202ENST00000616154 SLC24A1O60721 1099 aa26.68■■□□□ 1.86
CDX1-202ENST00000616154 IL2RBP14784 551 aa26.68■■□□□ 1.86
CDX1-202ENST00000616154 TIMELESSQ9UNS1 1208 aa26.68■■□□□ 1.86
CDX1-202ENST00000616154 TXNRD1Q16881 649 aa26.65■■□□□ 1.86
CDX1-202ENST00000616154 IP6K1Q92551 441 aa26.65■■□□□ 1.86
CDX1-202ENST00000616154 PPP1R1BQ9UD71 204 aaPredicted RBP26.64■■□□□ 1.85
CDX1-202ENST00000616154 BTAF1O14981 1849 aa26.64■■□□□ 1.85
CDX1-202ENST00000616154 KAT6BQ8WYB5 2073 aa26.62■■□□□ 1.85
CDX1-202ENST00000616154 ANKRD36BQ8N2N9 1353 aa26.62■■□□□ 1.85
CDX1-202ENST00000616154 ACSBG1Q96GR2 724 aa26.61■■□□□ 1.85
CDX1-202ENST00000616154 COG3Q96JB2 828 aa26.61■■□□□ 1.85
CDX1-202ENST00000616154 STK32BQ9NY57 414 aa26.61■■□□□ 1.85
CDX1-202ENST00000616154 PDGFDQ9GZP0 370 aaPredicted RBP26.59■■□□□ 1.85
CDX1-202ENST00000616154 PAPPAQ13219 1627 aa26.58■■□□□ 1.85
CDX1-202ENST00000616154 SLC15A2Q16348 729 aa26.58■■□□□ 1.85
CDX1-202ENST00000616154 MAP3K19Q56UN5 1328 aa26.57■■□□□ 1.84
CDX1-202ENST00000616154 USP47Q96K76 1375 aa26.57■■□□□ 1.84
CDX1-202ENST00000616154 RGPD2P0DJD1 1756 aa26.56■■□□□ 1.84
CDX1-202ENST00000616154 LTV1Q96GA3 475 aaPredicted RBP26.56■■□□□ 1.84
CDX1-202ENST00000616154 MYOM1P52179 1685 aa26.55■■□□□ 1.84
CDX1-202ENST00000616154 HOXC9P31274 260 aa26.55■■□□□ 1.84
CDX1-202ENST00000616154 TMF1P82094 1093 aa26.55■■□□□ 1.84
CDX1-202ENST00000616154 ZBTB7AO95365 584 aa26.54■■□□□ 1.84
CDX1-202ENST00000616154 RTL1A6NKG5 1358 aa26.53■■□□□ 1.84
CDX1-202ENST00000616154 SHANK3Q9BYB0 1731 aa26.52■■□□□ 1.84
CDX1-202ENST00000616154 KIF20BQ96Q89 1820 aa26.52■■□□□ 1.84
CDX1-202ENST00000616154 AMPHP49418 695 aa26.52■■□□□ 1.84
CDX1-202ENST00000616154 FBLN1P23142 703 aa26.51■■□□□ 1.83
CDX1-202ENST00000616154 PTGER2P43116 358 aa26.51■■□□□ 1.83
CDX1-202ENST00000616154 DOT1LQ8TEK3 1739 aa26.49■■□□□ 1.83
CDX1-202ENST00000616154 DDX54Q8TDD1 881 aaKnown RBP26.49■■□□□ 1.83
CDX1-202ENST00000616154 FYB1O15117 783 aa26.48■■□□□ 1.83
CDX1-202ENST00000616154 MTFR1LQ9H019 292 aa26.47■■□□□ 1.83
CDX1-202ENST00000616154 ATF5Q9Y2D1 282 aaPredicted RBP26.47■■□□□ 1.83
CDX1-202ENST00000616154 MEGF6O75095 1541 aa26.47■■□□□ 1.83
CDX1-202ENST00000616154 QSER1Q2KHR3 1735 aa26.47■■□□□ 1.83
CDX1-202ENST00000616154 DCAF8L1A6NGE4 600 aa26.46■■□□□ 1.83
CDX1-202ENST00000616154 CDCA8Q53HL2 280 aa26.46■■□□□ 1.83
CDX1-202ENST00000616154 GGNBP2Q9H3C7 697 aa26.46■■□□□ 1.83
CDX1-202ENST00000616154 RRS1Q15050 365 aaKnown RBP26.44■■□□□ 1.82
CDX1-202ENST00000616154 LRRC4BQ9NT99 713 aa26.44■■□□□ 1.82
CDX1-202ENST00000616154 YY1P25490 414 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms