RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FYB1O15117 783 aa23.31■■□□□ 1.32
TRIM28-215ENST00000601150 ONECUT3O60422 494 aaPredicted RBP23.31■■□□□ 1.32
TRIM28-215ENST00000601150 SPATA31A1Q5TZJ5 1347 aa23.31■■□□□ 1.32
TRIM28-215ENST00000601150 FAM98CQ17RN3 349 aaKnown RBP23.29■■□□□ 1.32
TRIM28-215ENST00000601150 LARP1Q6PKG0 1096 aaKnown RBP23.29■■□□□ 1.32
TRIM28-215ENST00000601150 SEPT12Q8IYM1 358 aa23.29■■□□□ 1.32
TRIM28-215ENST00000601150 GGNBP2Q9H3C7 697 aa23.28■■□□□ 1.32
TRIM28-215ENST00000601150 AXIN2Q9Y2T1 843 aa23.28■■□□□ 1.32
TRIM28-215ENST00000601150 THSD7AQ9UPZ6 1657 aa23.28■■□□□ 1.32
TRIM28-215ENST00000601150 KIF7Q2M1P5 1343 aa23.27■■□□□ 1.32
TRIM28-215ENST00000601150 CRB1P82279 1406 aa23.26■■□□□ 1.31
TRIM28-215ENST00000601150 A0A0G2JS52 829 aa23.26■■□□□ 1.31
TRIM28-215ENST00000601150 MYT1Q01538 1121 aa23.26■■□□□ 1.31
TRIM28-215ENST00000601150 ANKRD26Q9UPS8 1709 aa23.25■■□□□ 1.31
TRIM28-215ENST00000601150 CGNL1Q0VF96 1302 aa23.25■■□□□ 1.31
TRIM28-215ENST00000601150 PANK3Q9H999 370 aa23.24■■□□□ 1.31
TRIM28-215ENST00000601150 USP35Q9P2H5 1018 aa23.24■■□□□ 1.31
TRIM28-215ENST00000601150 WDR17Q8IZU2 1322 aa23.24■■□□□ 1.31
TRIM28-215ENST00000601150 WNK3Q9BYP7 1800 aa23.22■■□□□ 1.31
TRIM28-215ENST00000601150 BARGINQ6ZT62 677 aa23.22■■□□□ 1.31
TRIM28-215ENST00000601150 TCP11L2Q8N4U5 519 aa23.22■■□□□ 1.31
TRIM28-215ENST00000601150 THRAP3Q9Y2W1 955 aaKnown RBP23.22■■□□□ 1.31
TRIM28-215ENST00000601150 CSB-PGBD3P0DP91 1061 aa23.21■■□□□ 1.31
TRIM28-215ENST00000601150 TOM1L2Q6ZVM7 507 aa23.21■■□□□ 1.31
TRIM28-215ENST00000601150 UPF1Q92900 1129 aaKnown RBP eCLIP23.21■■□□□ 1.31
TRIM28-215ENST00000601150 BLMP54132 1417 aaPredicted RBP23.2■■□□□ 1.3
TRIM28-215ENST00000601150 MAP3K19Q56UN5 1328 aa23.2■■□□□ 1.3
TRIM28-215ENST00000601150 CCDC7Q96M83 1385 aa23.19■■□□□ 1.3
TRIM28-215ENST00000601150 KRT27Q7Z3Y8 459 aa23.19■■□□□ 1.3
TRIM28-215ENST00000601150 IP6K1Q92551 441 aa23.19■■□□□ 1.3
TRIM28-215ENST00000601150 PARP4Q9UKK3 1724 aaKnown RBP23.19■■□□□ 1.3
TRIM28-215ENST00000601150 FAM208AQ9UK61 1670 aaKnown RBP23.19■■□□□ 1.3
TRIM28-215ENST00000601150 FBLN1P23142 703 aa23.18■■□□□ 1.3
TRIM28-215ENST00000601150 ERBB3P21860 1342 aa23.17■■□□□ 1.3
TRIM28-215ENST00000601150 AMPHP49418 695 aa23.17■■□□□ 1.3
TRIM28-215ENST00000601150 CARD10Q9BWT7 1032 aa23.17■■□□□ 1.3
TRIM28-215ENST00000601150 RTL1A6NKG5 1358 aa23.16■■□□□ 1.3
TRIM28-215ENST00000601150 MAP2P11137 1827 aaKnown RBP23.16■■□□□ 1.3
TRIM28-215ENST00000601150 WASHC2AQ641Q2 1341 aa23.15■■□□□ 1.3
TRIM28-215ENST00000601150 RRS1Q15050 365 aaKnown RBP23.15■■□□□ 1.3
TRIM28-215ENST00000601150 ANKRD24Q8TF21 1146 aa23.15■■□□□ 1.3
TRIM28-215ENST00000601150 NSD2O96028 1365 aa23.14■■□□□ 1.3
TRIM28-215ENST00000601150 HOXC9P31274 260 aa23.14■■□□□ 1.29
TRIM28-215ENST00000601150 PEAK1Q9H792 1746 aa23.13■■□□□ 1.29
TRIM28-215ENST00000601150 KNSTRNQ9Y448 316 aa23.13■■□□□ 1.29
TRIM28-215ENST00000601150 LRRC37A3O60309 1634 aa23.12■■□□□ 1.29
TRIM28-215ENST00000601150 NLRP2Q9NX02 1062 aa23.12■■□□□ 1.29
TRIM28-215ENST00000601150 KIF24Q5T7B8 1368 aa23.12■■□□□ 1.29
TRIM28-215ENST00000601150 RGPD2P0DJD1 1756 aa23.11■■□□□ 1.29
TRIM28-215ENST00000601150 LTV1Q96GA3 475 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-215ENST00000601150 CDCA7Q9BWT1 371 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-215ENST00000601150 PDE3BQ13370 1112 aa23.09■■□□□ 1.29
TRIM28-215ENST00000601150 CCDC125Q86Z20 511 aa23.09■■□□□ 1.29
TRIM28-215ENST00000601150 FLT4P35916 1363 aa23.09■■□□□ 1.29
TRIM28-215ENST00000601150 DISP2A7MBM2 1401 aa23.08■■□□□ 1.29
TRIM28-215ENST00000601150 INSRP06213 1382 aa23.07■■□□□ 1.28
TRIM28-215ENST00000601150 EP400Q96L91 3159 aa23.07■■□□□ 1.28
TRIM28-215ENST00000601150 SMG6Q86US8 1419 aaKnown RBP23.07■■□□□ 1.28
TRIM28-215ENST00000601150 FAM182BQ5T319 152 aa23.06■■□□□ 1.28
TRIM28-215ENST00000601150 EMILIN1Q9Y6C2 1016 aa23.06■■□□□ 1.28
TRIM28-215ENST00000601150 RGPD1P0DJD0 1748 aa23.05■■□□□ 1.28
TRIM28-215ENST00000601150 TNNT2P45379 298 aaPredicted RBP23.05■■□□□ 1.28
TRIM28-215ENST00000601150 DDB1Q16531 1140 aa23.05■■□□□ 1.28
TRIM28-215ENST00000601150 AMER1Q5JTC6 1135 aaPredicted RBP23.05■■□□□ 1.28
TRIM28-215ENST00000601150 MORC1Q86VD1 984 aa23.05■■□□□ 1.28
TRIM28-215ENST00000601150 PER1O15534 1290 aaPredicted RBP23.04■■□□□ 1.28
TRIM28-215ENST00000601150 HSP90AB2PQ58FF8 381 aa23.04■■□□□ 1.28
TRIM28-215ENST00000601150 PPM1GO15355 546 aaPredicted RBP23.03■■□□□ 1.28
TRIM28-215ENST00000601150 ZEB1P37275 1124 aaPredicted RBP23.03■■□□□ 1.28
TRIM28-215ENST00000601150 FAM196AQ6ZSG2 479 aa23.03■■□□□ 1.28
TRIM28-215ENST00000601150 POLKQ9UBT6 870 aa23.03■■□□□ 1.28
TRIM28-215ENST00000601150 IL2RBP14784 551 aa23.01■■□□□ 1.27
TRIM28-215ENST00000601150 TNS2Q63HR2 1409 aa23■■□□□ 1.27
TRIM28-215ENST00000601150 TNS1Q9HBL0 1735 aaKnown RBP23■■□□□ 1.27
TRIM28-215ENST00000601150 EXOC5O00471 708 aa23■■□□□ 1.27
TRIM28-215ENST00000601150 SF3B2Q13435 895 aaKnown RBP23■■□□□ 1.27
TRIM28-215ENST00000601150 OVOS2A0A0G2JMS6 1433 aa22.99■■□□□ 1.27
TRIM28-215ENST00000601150 SBF2Q86WG5 1849 aa22.98■■□□□ 1.27
TRIM28-215ENST00000601150 NPC1L1Q9UHC9 1359 aa22.98■■□□□ 1.27
TRIM28-215ENST00000601150 NBPF6Q5VWK0 638 aa22.97■■□□□ 1.27
TRIM28-215ENST00000601150 NBPF4Q96M43 638 aa22.97■■□□□ 1.27
TRIM28-215ENST00000601150 CC2D1BQ5T0F9 858 aaKnown RBP22.95■■□□□ 1.26
TRIM28-215ENST00000601150 MARCH10Q8NA82 808 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-215ENST00000601150 TRIM37O94972 964 aa22.93■■□□□ 1.26
TRIM28-215ENST00000601150 USHBP1Q8N6Y0 703 aa22.93■■□□□ 1.26
TRIM28-215ENST00000601150 MEGF6O75095 1541 aa22.92■■□□□ 1.26
TRIM28-215ENST00000601150 BCL9O00512 1426 aa22.92■■□□□ 1.26
TRIM28-215ENST00000601150 SHANK3Q9BYB0 1731 aa22.92■■□□□ 1.26
TRIM28-215ENST00000601150 BAG6P46379 1132 aa22.91■■□□□ 1.26
TRIM28-215ENST00000601150 DEFB132Q7Z7B7 95 aa22.91■■□□□ 1.26
TRIM28-215ENST00000601150 RAPGEF4Q8WZA2 1011 aa22.91■■□□□ 1.26
TRIM28-215ENST00000601150 NCAPD2Q15021 1401 aa22.91■■□□□ 1.26
TRIM28-215ENST00000601150 EIF4A2Q14240 407 aaKnown RBP22.9■■□□□ 1.26
TRIM28-215ENST00000601150 CNGB1Q14028 1251 aaPredicted RBP22.88■■□□□ 1.25
TRIM28-215ENST00000601150 EYA1Q99502 592 aa22.88■■□□□ 1.25
TRIM28-215ENST00000601150 TATP17735 454 aaPredicted RBP22.87■■□□□ 1.25
TRIM28-215ENST00000601150 ZCRB1Q8TBF4 217 aaKnown RBP22.87■■□□□ 1.25
TRIM28-215ENST00000601150 PKD1L3Q7Z443 1732 aa22.86■■□□□ 1.25
TRIM28-215ENST00000601150 DDX54Q8TDD1 881 aaKnown RBP22.86■■□□□ 1.25
TRIM28-215ENST00000601150 NHSQ6T4R5 1651 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms