RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 DISP2A7MBM2 1401 aa22.26■■□□□ 1.15
VRK3-221ENST00000600284 TOM1L2Q6ZVM7 507 aa22.26■■□□□ 1.15
VRK3-221ENST00000600284 WDR17Q8IZU2 1322 aa22.26■■□□□ 1.15
VRK3-221ENST00000600284 CLSPNQ9HAW4 1339 aa22.26■■□□□ 1.15
VRK3-221ENST00000600284 EDC4Q6P2E9 1401 aaKnown RBP22.25■■□□□ 1.15
VRK3-221ENST00000600284 NFAT5O94916 1531 aa22.23■■□□□ 1.15
VRK3-221ENST00000600284 SOX12O15370 315 aa22.23■■□□□ 1.15
VRK3-221ENST00000600284 TRIM37O94972 964 aa22.23■■□□□ 1.15
VRK3-221ENST00000600284 EN1Q05925 392 aaPredicted RBP22.23■■□□□ 1.15
VRK3-221ENST00000600284 CDCA7Q9BWT1 371 aaPredicted RBP22.23■■□□□ 1.15
VRK3-221ENST00000600284 ABCC6O95255 1503 aa22.22■■□□□ 1.15
VRK3-221ENST00000600284 NME9Q86XW9 330 aa22.22■■□□□ 1.15
VRK3-221ENST00000600284 A0A1W2PP64 1363 aa22.22■■□□□ 1.15
VRK3-221ENST00000600284 USP54Q70EL1 1684 aa22.21■■□□□ 1.15
VRK3-221ENST00000600284 PARP4Q9UKK3 1724 aaKnown RBP22.21■■□□□ 1.15
VRK3-221ENST00000600284 CARD10Q9BWT7 1032 aa22.21■■□□□ 1.15
VRK3-221ENST00000600284 CSB-PGBD3P0DP91 1061 aa22.19■■□□□ 1.14
VRK3-221ENST00000600284 DDB1Q16531 1140 aa22.19■■□□□ 1.14
VRK3-221ENST00000600284 CAMKK2Q96RR4 588 aa22.19■■□□□ 1.14
VRK3-221ENST00000600284 PARD3Q8TEW0 1356 aa22.18■■□□□ 1.14
VRK3-221ENST00000600284 USP47Q96K76 1375 aa22.18■■□□□ 1.14
VRK3-221ENST00000600284 APBA3O96018 575 aa22.18■■□□□ 1.14
VRK3-221ENST00000600284 TMF1P82094 1093 aa22.18■■□□□ 1.14
VRK3-221ENST00000600284 TNS1Q9HBL0 1735 aaKnown RBP22.17■■□□□ 1.14
VRK3-221ENST00000600284 EZH2Q15910 746 aaKnown RBP22.16■■□□□ 1.14
VRK3-221ENST00000600284 CCDC7Q96M83 1385 aa22.15■■□□□ 1.14
VRK3-221ENST00000600284 CDCA8Q53HL2 280 aa22.15■■□□□ 1.14
VRK3-221ENST00000600284 PCGF6Q9BYE7 350 aa22.15■■□□□ 1.14
VRK3-221ENST00000600284 OVOS2A0A0G2JMS6 1433 aa22.14■■□□□ 1.14
VRK3-221ENST00000600284 OVOS2A0A0J9YW53 1432 aa22.14■■□□□ 1.14
VRK3-221ENST00000600284 OVOS2Q6IE36 1432 aa22.14■■□□□ 1.14
VRK3-221ENST00000600284 SRCAPQ6ZRS2 3230 aa22.14■■□□□ 1.13
VRK3-221ENST00000600284 ANKRD36BQ8N2N9 1353 aa22.13■■□□□ 1.13
VRK3-221ENST00000600284 ERBB3P21860 1342 aa22.13■■□□□ 1.13
VRK3-221ENST00000600284 RGPD5Q99666 1765 aa22.13■■□□□ 1.13
VRK3-221ENST00000600284 LRRC37A3O60309 1634 aa22.11■■□□□ 1.13
VRK3-221ENST00000600284 EXOC5O00471 708 aa22.11■■□□□ 1.13
VRK3-221ENST00000600284 COG3Q96JB2 828 aa22.11■■□□□ 1.13
VRK3-221ENST00000600284 BCL9O00512 1426 aa22.11■■□□□ 1.13
VRK3-221ENST00000600284 PEAK1Q9H792 1746 aa22.09■■□□□ 1.13
VRK3-221ENST00000600284 PSDA5PKW4 1024 aaPredicted RBP22.09■■□□□ 1.13
VRK3-221ENST00000600284 MARCH10Q8NA82 808 aaPredicted RBP22.09■■□□□ 1.13
VRK3-221ENST00000600284 ANKRD24Q8TF21 1146 aa22.08■■□□□ 1.13
VRK3-221ENST00000600284 IP6K1Q92551 441 aa22.08■■□□□ 1.13
VRK3-221ENST00000600284 NLRP2Q9NX02 1062 aa22.08■■□□□ 1.13
VRK3-221ENST00000600284 WNK3Q9BYP7 1800 aa22.08■■□□□ 1.12
VRK3-221ENST00000600284 PLSCR1O15162 318 aa22.07■■□□□ 1.12
VRK3-221ENST00000600284 BCL11BQ9C0K0 894 aaPredicted RBP22.07■■□□□ 1.12
VRK3-221ENST00000600284 R3HDM1Q15032 1099 aaKnown RBP22.06■■□□□ 1.12
VRK3-221ENST00000600284 LTN1O94822 1766 aa22.06■■□□□ 1.12
VRK3-221ENST00000600284 NBPF14Q5TI25 921 aa22.05■■□□□ 1.12
VRK3-221ENST00000600284 FYB1O15117 783 aa22.04■■□□□ 1.12
VRK3-221ENST00000600284 IL2RBP14784 551 aa22.04■■□□□ 1.12
VRK3-221ENST00000600284 LRP5O75197 1615 aa22.02■■□□□ 1.12
VRK3-221ENST00000600284 TNS2Q63HR2 1409 aa22.02■■□□□ 1.12
VRK3-221ENST00000600284 MAP3K19Q56UN5 1328 aa22.02■■□□□ 1.12
VRK3-221ENST00000600284 RREB1Q92766 1687 aa22.01■■□□□ 1.11
VRK3-221ENST00000600284 SBF2Q86WG5 1849 aa22.01■■□□□ 1.11
VRK3-221ENST00000600284 HOXC9P31274 260 aa22■■□□□ 1.11
VRK3-221ENST00000600284 AMPHP49418 695 aa22■■□□□ 1.11
VRK3-221ENST00000600284 GGNBP2Q9H3C7 697 aa21.99■■□□□ 1.11
VRK3-221ENST00000600284 RGPD3A6NKT7 1758 aaPredicted RBP21.98■■□□□ 1.11
VRK3-221ENST00000600284 RGPD4Q7Z3J3 1758 aa21.98■■□□□ 1.11
VRK3-221ENST00000600284 CCER1Q8TC90 406 aaPredicted RBP21.98■■□□□ 1.11
VRK3-221ENST00000600284 RTL1A6NKG5 1358 aa21.98■■□□□ 1.11
VRK3-221ENST00000600284 FBLN1P23142 703 aa21.97■■□□□ 1.11
VRK3-221ENST00000600284 PTF1AQ7RTS3 328 aa21.97■■□□□ 1.11
VRK3-221ENST00000600284 NUP188Q5SRE5 1749 aa21.97■■□□□ 1.11
VRK3-221ENST00000600284 LTV1Q96GA3 475 aaPredicted RBP21.96■■□□□ 1.11
VRK3-221ENST00000600284 FAM208AQ9UK61 1670 aaKnown RBP21.95■■□□□ 1.1
VRK3-221ENST00000600284 CARD14Q9BXL6 1004 aa21.95■■□□□ 1.1
VRK3-221ENST00000600284 EIF4G2P78344 907 aaKnown RBP eCLIP21.93■■□□□ 1.11e-6■■■□□ 15.7
VRK3-221ENST00000600284 RRS1Q15050 365 aaKnown RBP21.93■■□□□ 1.1
VRK3-221ENST00000600284 KIF24Q5T7B8 1368 aa21.93■■□□□ 1.1
VRK3-221ENST00000600284 PROM2Q8N271 834 aa21.92■■□□□ 1.1
VRK3-221ENST00000600284 KCNQ2O43526 872 aa21.91■■□□□ 1.1
VRK3-221ENST00000600284 NSD3Q9BZ95 1437 aa21.9■■□□□ 1.1
VRK3-221ENST00000600284 MYOM1P52179 1685 aa21.9■■□□□ 1.1
VRK3-221ENST00000600284 TXNRD1Q16881 649 aa21.89■■□□□ 1.09
VRK3-221ENST00000600284 ACSBG1Q96GR2 724 aa21.89■■□□□ 1.09
VRK3-221ENST00000600284 SMG6Q86US8 1419 aaKnown RBP21.89■■□□□ 1.09
VRK3-221ENST00000600284 INSRP06213 1382 aa21.88■■□□□ 1.09
VRK3-221ENST00000600284 NHSQ6T4R5 1651 aa21.88■■□□□ 1.09
VRK3-221ENST00000600284 FLT4P35916 1363 aa21.87■■□□□ 1.09
VRK3-221ENST00000600284 KIF20BQ96Q89 1820 aa21.87■■□□□ 1.09
VRK3-221ENST00000600284 CGNL1Q0VF96 1302 aa21.87■■□□□ 1.09
VRK3-221ENST00000600284 HSPA5P11021 654 aaKnown RBP21.87■■□□□ 1.09
VRK3-221ENST00000600284 NBPF6Q5VWK0 638 aa21.87■■□□□ 1.09
VRK3-221ENST00000600284 DDX54Q8TDD1 881 aaKnown RBP21.87■■□□□ 1.09
VRK3-221ENST00000600284 NBPF4Q96M43 638 aa21.87■■□□□ 1.09
VRK3-221ENST00000600284 ZCRB1Q8TBF4 217 aaKnown RBP21.86■■□□□ 1.09
VRK3-221ENST00000600284 HSP90AB2PQ58FF8 381 aa21.85■■□□□ 1.09
VRK3-221ENST00000600284 ANO8Q9HCE9 1232 aaPredicted RBP21.85■■□□□ 1.09
VRK3-221ENST00000600284 SPON1Q9HCB6 807 aa21.84■■□□□ 1.09
VRK3-221ENST00000600284 RAPGEF4Q8WZA2 1011 aa21.83■■□□□ 1.09
VRK3-221ENST00000600284 STK32BQ9NY57 414 aa21.83■■□□□ 1.09
VRK3-221ENST00000600284 POLR3GLQ9BT43 218 aa21.82■■□□□ 1.08
VRK3-221ENST00000600284 SLC15A2Q16348 729 aa21.81■■□□□ 1.08
VRK3-221ENST00000600284 EMILIN1Q9Y6C2 1016 aa21.81■■□□□ 1.08
VRK3-221ENST00000600284 MEGF6O75095 1541 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms