RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	USP21	Q9UK80	565 aa		29.9	■■■□□ 2.38
LTBP4-227	ENST00000600026	PEAK1	Q9H792	1746 aa		29.89	■■■□□ 2.38
LTBP4-227	ENST00000600026	BTG4	Q9NY30	223 aa		29.89	■■■□□ 2.38
LTBP4-227	ENST00000600026	MORC1	Q86VD1	984 aa		29.88	■■■□□ 2.37
LTBP4-227	ENST00000600026	MAP3K19	Q56UN5	1328 aa		29.87	■■■□□ 2.37
LTBP4-227	ENST00000600026	RRS1	Q15050	365 aa	Known RBP	29.86	■■■□□ 2.37
LTBP4-227	ENST00000600026	ZNF772	Q68DY9	489 aa	Predicted RBP	29.86	■■■□□ 2.37
LTBP4-227	ENST00000600026	COL5A2	P05997	1499 aa	Predicted RBP	29.86	■■■□□ 2.37
LTBP4-227	ENST00000600026	TNNT2	P45379	298 aa	Predicted RBP	29.85	■■■□□ 2.37
LTBP4-227	ENST00000600026	CNGB1	Q14028	1251 aa	Predicted RBP	29.85	■■■□□ 2.37
LTBP4-227	ENST00000600026	UNC5CL	Q8IV45	518 aa		29.85	■■■□□ 2.37
LTBP4-227	ENST00000600026	ATRN	O75882	1429 aa		29.83	■■■□□ 2.37
LTBP4-227	ENST00000600026	RTL1	A6NKG5	1358 aa		29.83	■■■□□ 2.37
LTBP4-227	ENST00000600026	AXIN2	Q9Y2T1	843 aa		29.82	■■■□□ 2.36
LTBP4-227	ENST00000600026	BLM	P54132	1417 aa	Predicted RBP	29.8	■■■□□ 2.36
LTBP4-227	ENST00000600026	EMILIN1	Q9Y6C2	1016 aa		29.8	■■■□□ 2.36
LTBP4-227	ENST00000600026	SMG6	Q86US8	1419 aa	Known RBP	29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	ANP32C	O43423	234 aa		29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	HOXC9	P31274	260 aa		29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	AMPH	P49418	695 aa		29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	IP6K1	Q92551	441 aa		29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	STRN4	Q9NRL3	753 aa		29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	TRPC5	Q9UL62	973 aa	Predicted RBP	29.79	■■■□□ 2.36
LTBP4-227	ENST00000600026	KIF24	Q5T7B8	1368 aa		29.78	■■■□□ 2.36
LTBP4-227	ENST00000600026	FLT4	P35916	1363 aa		29.77	■■■□□ 2.36
LTBP4-227	ENST00000600026	GLI3	P10071	1580 aa		29.77	■■■□□ 2.36
LTBP4-227	ENST00000600026	POLK	Q9UBT6	870 aa		29.77	■■■□□ 2.36
LTBP4-227	ENST00000600026	FAM208A	Q9UK61	1670 aa	Known RBP	29.76	■■■□□ 2.36
LTBP4-227	ENST00000600026	VPS72	Q15906	364 aa		29.76	■■■□□ 2.35
LTBP4-227	ENST00000600026	QTRT2	Q9H974	415 aa	Known RBP	29.76	■■■□□ 2.35
LTBP4-227	ENST00000600026	EVA1C	P58658	441 aa		29.75	■■■□□ 2.35
LTBP4-227	ENST00000600026	ERBB3	P21860	1342 aa		29.72	■■■□□ 2.35
LTBP4-227	ENST00000600026	RGPD2	P0DJD1	1756 aa		29.72	■■■□□ 2.35
LTBP4-227	ENST00000600026	PPM1G	O15355	546 aa	Predicted RBP	29.72	■■■□□ 2.35
LTBP4-227	ENST00000600026	LARP1	Q6PKG0	1096 aa	Known RBP	29.72	■■■□□ 2.35
LTBP4-227	ENST00000600026	PARD3	Q8TEW0	1356 aa		29.72	■■■□□ 2.35
LTBP4-227	ENST00000600026	CDK12	Q9NYV4	1490 aa	Predicted RBP	29.72	■■■□□ 2.35
LTBP4-227	ENST00000600026	WDR17	Q8IZU2	1322 aa		29.71	■■■□□ 2.35
LTBP4-227	ENST00000600026	RALBP1	Q15311	655 aa		29.71	■■■□□ 2.35
LTBP4-227	ENST00000600026	ANKRD24	Q8TF21	1146 aa		29.71	■■■□□ 2.35
LTBP4-227	ENST00000600026	CCDC9	Q9Y3X0	531 aa	Known RBP	29.71	■■■□□ 2.35
LTBP4-227	ENST00000600026	INSR	P06213	1382 aa		29.71	■■■□□ 2.35
LTBP4-227	ENST00000600026	CRB1	P82279	1406 aa		29.71	■■■□□ 2.35
LTBP4-227	ENST00000600026	WNK3	Q9BYP7	1800 aa		29.7	■■■□□ 2.34
LTBP4-227	ENST00000600026	SPATA31A5	Q5VU36	1347 aa		29.7	■■■□□ 2.34
LTBP4-227	ENST00000600026	SPATA31A7	Q8IWB4	1347 aa		29.7	■■■□□ 2.34
LTBP4-227	ENST00000600026	RXRB	P28702	533 aa		29.69	■■■□□ 2.34
LTBP4-227	ENST00000600026	HSP90AB2P	Q58FF8	381 aa		29.69	■■■□□ 2.34
LTBP4-227	ENST00000600026	GJD4	Q96KN9	370 aa	Predicted RBP	29.69	■■■□□ 2.34
LTBP4-227	ENST00000600026	PRKRIP1	Q9H875	184 aa	Predicted RBP	29.69	■■■□□ 2.34
LTBP4-227	ENST00000600026	CSB-PGBD3	P0DP91	1061 aa		29.68	■■■□□ 2.34
LTBP4-227	ENST00000600026	LTV1	Q96GA3	475 aa	Predicted RBP	29.68	■■■□□ 2.34
LTBP4-227	ENST00000600026	RBM6	P78332	1123 aa	Known RBP	29.67	■■■□□ 2.34
LTBP4-227	ENST00000600026	SPATA31A1	Q5TZJ5	1347 aa		29.67	■■■□□ 2.34
LTBP4-227	ENST00000600026	TOM1L2	Q6ZVM7	507 aa		29.66	■■■□□ 2.34
LTBP4-227	ENST00000600026	PPP2R1A	P30153	589 aa		29.64	■■■□□ 2.34
LTBP4-227	ENST00000600026	MTHFS	P49914	203 aa		29.64	■■■□□ 2.34
LTBP4-227	ENST00000600026	USP35	Q9P2H5	1018 aa		29.62	■■■□□ 2.33
LTBP4-227	ENST00000600026	THSD7A	Q9UPZ6	1657 aa		29.61	■■■□□ 2.33
LTBP4-227	ENST00000600026	CARD10	Q9BWT7	1032 aa		29.6	■■■□□ 2.33
LTBP4-227	ENST00000600026	NLRP2	Q9NX02	1062 aa		29.6	■■■□□ 2.33
LTBP4-227	ENST00000600026	RGS12	O14924	1447 aa		29.6	■■■□□ 2.33
LTBP4-227	ENST00000600026	COL3A1	P02461	1466 aa	Predicted RBP	29.59	■■■□□ 2.33
LTBP4-227	ENST00000600026	EIF4A2	Q14240	407 aa	Known RBP	29.58	■■■□□ 2.33
LTBP4-227	ENST00000600026	TCP11L2	Q8N4U5	519 aa		29.58	■■■□□ 2.33
LTBP4-227	ENST00000600026	MYBBP1A	Q9BQG0	1328 aa	Known RBP	29.58	■■■□□ 2.33
LTBP4-227	ENST00000600026	RGPD1	P0DJD0	1748 aa		29.57	■■■□□ 2.32
LTBP4-227	ENST00000600026	FAM98C	Q17RN3	349 aa	Known RBP	29.56	■■■□□ 2.32
LTBP4-227	ENST00000600026	THRAP3	Q9Y2W1	955 aa	Known RBP	29.56	■■■□□ 2.32
LTBP4-227	ENST00000600026	BRWD3	Q6RI45	1802 aa		29.56	■■■□□ 2.32
LTBP4-227	ENST00000600026	PARP4	Q9UKK3	1724 aa	Known RBP	29.56	■■■□□ 2.32
LTBP4-227	ENST00000600026	MIER1	Q8N108	512 aa		29.55	■■■□□ 2.32
LTBP4-227	ENST00000600026	NBPF6	Q5VWK0	638 aa		29.54	■■■□□ 2.32
LTBP4-227	ENST00000600026	BARGIN	Q6ZT62	677 aa		29.54	■■■□□ 2.32
LTBP4-227	ENST00000600026	NBPF4	Q96M43	638 aa		29.54	■■■□□ 2.32
LTBP4-227	ENST00000600026	DISP2	A7MBM2	1401 aa		29.53	■■■□□ 2.32
LTBP4-227	ENST00000600026	LRRC37A3	O60309	1634 aa		29.53	■■■□□ 2.32
LTBP4-227	ENST00000600026	NCAPD2	Q15021	1401 aa		29.52	■■■□□ 2.32
LTBP4-227	ENST00000600026	ONECUT3	O60422	494 aa	Predicted RBP	29.51	■■■□□ 2.31
LTBP4-227	ENST00000600026	USHBP1	Q8N6Y0	703 aa		29.51	■■■□□ 2.31
LTBP4-227	ENST00000600026		A0A0G2JS52	829 aa		29.49	■■■□□ 2.31
LTBP4-227	ENST00000600026	IL13	P35225	146 aa		29.49	■■■□□ 2.31
LTBP4-227	ENST00000600026	MYT1	Q01538	1121 aa		29.49	■■■□□ 2.31
LTBP4-227	ENST00000600026	SEPT12	Q8IYM1	358 aa		29.49	■■■□□ 2.31
LTBP4-227	ENST00000600026	CFAP53	Q96M91	514 aa		29.49	■■■□□ 2.31
LTBP4-227	ENST00000600026	EYA1	Q99502	592 aa		29.49	■■■□□ 2.31
LTBP4-227	ENST00000600026	IGSF1	Q8N6C5	1336 aa		29.47	■■■□□ 2.31
LTBP4-227	ENST00000600026	DIAPH1	O60610	1272 aa	Known RBP	29.47	■■■□□ 2.31
LTBP4-227	ENST00000600026	MEGF6	O75095	1541 aa		29.45	■■■□□ 2.31
LTBP4-227	ENST00000600026	SRCAP	Q6ZRS2	3230 aa		29.45	■■■□□ 2.31
LTBP4-227	ENST00000600026	CCER2	I3L3R5	266 aa		29.44	■■■□□ 2.3
LTBP4-227	ENST00000600026	IL2RB	P14784	551 aa		29.44	■■■□□ 2.3
LTBP4-227	ENST00000600026	CDCA7	Q9BWT1	371 aa	Predicted RBP	29.44	■■■□□ 2.3
LTBP4-227	ENST00000600026	SHANK3	Q9BYB0	1731 aa		29.42	■■■□□ 2.3
LTBP4-227	ENST00000600026	PKD1L3	Q7Z443	1732 aa		29.4	■■■□□ 2.3
LTBP4-227	ENST00000600026	TNS2	Q63HR2	1409 aa		29.4	■■■□□ 2.3
LTBP4-227	ENST00000600026	OVOS2	A0A0G2JMS6	1433 aa		29.39	■■■□□ 2.3
LTBP4-227	ENST00000600026	RAPGEF4	Q8WZA2	1011 aa		29.38	■■■□□ 2.29
LTBP4-227	ENST00000600026	KDR	P35968	1356 aa		29.38	■■■□□ 2.29
LTBP4-227	ENST00000600026	DDB1	Q16531	1140 aa		29.37	■■■□□ 2.29

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms