RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 OVOS2A0A0J9YW53 1432 aa17.78■□□□□ 0.44
UPF1-208ENST00000600012 OVOS2Q6IE36 1432 aa17.78■□□□□ 0.44
UPF1-208ENST00000600012 ROCK2O75116 1388 aaKnown RBP17.78■□□□□ 0.44
UPF1-208ENST00000600012 RGPD3A6NKT7 1758 aaPredicted RBP17.77■□□□□ 0.44
UPF1-208ENST00000600012 RGPD4Q7Z3J3 1758 aa17.77■□□□□ 0.44
UPF1-208ENST00000600012 CPSF1Q10570 1443 aaKnown RBP17.76■□□□□ 0.43
UPF1-208ENST00000600012 ZNF316A6NFI3 1004 aaPredicted RBP17.76■□□□□ 0.43
UPF1-208ENST00000600012 NBPF14Q5TI25 921 aa17.76■□□□□ 0.43
UPF1-208ENST00000600012 ZNF692Q9BU19 519 aaPredicted RBP17.76■□□□□ 0.43
UPF1-208ENST00000600012 TOM1L2Q6ZVM7 507 aa17.75■□□□□ 0.43
UPF1-208ENST00000600012 RGPD5Q99666 1765 aa17.75■□□□□ 0.43
UPF1-208ENST00000600012 TTC21BQ7Z4L5 1316 aa17.74■□□□□ 0.43
UPF1-208ENST00000600012 WDR17Q8IZU2 1322 aa17.74■□□□□ 0.43
UPF1-208ENST00000600012 TTC21AQ8NDW8 1320 aa17.74■□□□□ 0.43
UPF1-208ENST00000600012 DDB1Q16531 1140 aa17.74■□□□□ 0.43
UPF1-208ENST00000600012 KCNH5Q8NCM2 988 aa17.74■□□□□ 0.43
UPF1-208ENST00000600012 MON2Q7Z3U7 1717 aa17.72■□□□□ 0.43
UPF1-208ENST00000600012 ARHGEF25Q86VW2 580 aa17.72■□□□□ 0.43
UPF1-208ENST00000600012 CDCA7Q9BWT1 371 aaPredicted RBP17.72■□□□□ 0.43
UPF1-208ENST00000600012 CARD11Q9BXL7 1154 aa17.72■□□□□ 0.43
UPF1-208ENST00000600012 AXIN2Q9Y2T1 843 aa17.72■□□□□ 0.43
UPF1-208ENST00000600012 USP47Q96K76 1375 aa17.71■□□□□ 0.43
UPF1-208ENST00000600012 HSPA5P11021 654 aaKnown RBP17.71■□□□□ 0.43
UPF1-208ENST00000600012 NFAT5O94916 1531 aa17.71■□□□□ 0.43
UPF1-208ENST00000600012 ABCC6O95255 1503 aa17.71■□□□□ 0.43
UPF1-208ENST00000600012 KTN1Q86UP2 1357 aaKnown RBP17.7■□□□□ 0.42
UPF1-208ENST00000600012 SBNO2Q9Y2G9 1366 aa17.7■□□□□ 0.42
UPF1-208ENST00000600012 EIF4G2P78344 907 aaKnown RBP eCLIP17.7■□□□□ 0.42
UPF1-208ENST00000600012 PLSCR1O15162 318 aa17.69■□□□□ 0.42
UPF1-208ENST00000600012 BCL9O00512 1426 aa17.69■□□□□ 0.42
UPF1-208ENST00000600012 USP54Q70EL1 1684 aa17.68■□□□□ 0.42
UPF1-208ENST00000600012 SOX12O15370 315 aa17.68■□□□□ 0.42
UPF1-208ENST00000600012 CSB-PGBD3P0DP91 1061 aa17.68■□□□□ 0.42
UPF1-208ENST00000600012 CARD10Q9BWT7 1032 aa17.68■□□□□ 0.42
UPF1-208ENST00000600012 BCL11BQ9C0K0 894 aaPredicted RBP17.68■□□□□ 0.42
UPF1-208ENST00000600012 CCDC7Q96M83 1385 aa17.66■□□□□ 0.42
UPF1-208ENST00000600012 MARCH10Q8NA82 808 aaPredicted RBP17.66■□□□□ 0.42
UPF1-208ENST00000600012 SPON1Q9HCB6 807 aa17.66■□□□□ 0.42
UPF1-208ENST00000600012 USP31Q70CQ4 1352 aa17.65■□□□□ 0.42
UPF1-208ENST00000600012 LTN1O94822 1766 aa17.64■□□□□ 0.41
UPF1-208ENST00000600012 KCNQ2O43526 872 aa17.64■□□□□ 0.41
UPF1-208ENST00000600012 TNS2Q63HR2 1409 aa17.64■□□□□ 0.41
UPF1-208ENST00000600012 CASZ1Q86V15 1759 aa17.63■□□□□ 0.41
UPF1-208ENST00000600012 PPP1R1BQ9UD71 204 aaPredicted RBP17.63■□□□□ 0.41
UPF1-208ENST00000600012 CD163L1Q9NR16 1453 aa17.63■□□□□ 0.41
UPF1-208ENST00000600012 EXOC5O00471 708 aa17.62■□□□□ 0.41
UPF1-208ENST00000600012 PTF1AQ7RTS3 328 aa17.62■□□□□ 0.41
UPF1-208ENST00000600012 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.62■□□□□ 0.41
UPF1-208ENST00000600012 ANO8Q9HCE9 1232 aaPredicted RBP17.62■□□□□ 0.41
UPF1-208ENST00000600012 NINLQ9Y2I6 1382 aa17.61■□□□□ 0.41
UPF1-208ENST00000600012 ERBB3P21860 1342 aa17.6■□□□□ 0.41
UPF1-208ENST00000600012 NHSQ6T4R5 1651 aa17.6■□□□□ 0.41
UPF1-208ENST00000600012 EDC4Q6P2E9 1401 aaKnown RBP17.59■□□□□ 0.41
UPF1-208ENST00000600012 HDGFL2Q7Z4V5 671 aaPredicted RBP17.59■□□□□ 0.41
UPF1-208ENST00000600012 NME9Q86XW9 330 aa17.59■□□□□ 0.41
UPF1-208ENST00000600012 ST20-MTHFSA0A0A6YYL1 179 aa17.58■□□□□ 0.4
UPF1-208ENST00000600012 PROM2Q8N271 834 aa17.58■□□□□ 0.4
UPF1-208ENST00000600012 TMC1Q8TDI8 760 aa17.58■□□□□ 0.4
UPF1-208ENST00000600012 NLRP2Q9NX02 1062 aa17.57■□□□□ 0.4
UPF1-208ENST00000600012 KAT6BQ8WYB5 2073 aa17.57■□□□□ 0.4
UPF1-208ENST00000600012 TXNRD1Q16881 649 aa17.56■□□□□ 0.4
UPF1-208ENST00000600012 SLC12A5Q9H2X9 1139 aa17.56■□□□□ 0.4
UPF1-208ENST00000600012 TERF2IPQ9NYB0 399 aa17.56■□□□□ 0.4
UPF1-208ENST00000600012 A0A1W2PP64 1363 aa17.55■□□□□ 0.4
UPF1-208ENST00000600012 DCAF8L1A6NGE4 600 aa17.55■□□□□ 0.4
UPF1-208ENST00000600012 PUS7Q96PZ0 661 aaKnown RBP17.55■□□□□ 0.4
UPF1-208ENST00000600012 STK32BQ9NY57 414 aa17.55■□□□□ 0.4
UPF1-208ENST00000600012 FAM208AQ9UK61 1670 aaKnown RBP17.55■□□□□ 0.4
UPF1-208ENST00000600012 IL2RBP14784 551 aa17.54■□□□□ 0.4
UPF1-208ENST00000600012 MYOM1P52179 1685 aa17.53■□□□□ 0.4
UPF1-208ENST00000600012 YY1P25490 414 aa17.53■□□□□ 0.4
UPF1-208ENST00000600012 ANKRD24Q8TF21 1146 aa17.53■□□□□ 0.4
UPF1-208ENST00000600012 PDGFDQ9GZP0 370 aaPredicted RBP17.53■□□□□ 0.4
UPF1-208ENST00000600012 BTAF1O14981 1849 aa17.53■□□□□ 0.4
UPF1-208ENST00000600012 WASHC2AQ641Q2 1341 aa17.52■□□□□ 0.4
UPF1-208ENST00000600012 SLC15A2Q16348 729 aa17.52■□□□□ 0.4
UPF1-208ENST00000600012 ZBTB7AO95365 584 aa17.51■□□□□ 0.39
UPF1-208ENST00000600012 TESK2Q96S53 571 aa17.51■□□□□ 0.39
UPF1-208ENST00000600012 PAPPAQ13219 1627 aa17.5■□□□□ 0.39
UPF1-208ENST00000600012 ACSBG1Q96GR2 724 aa17.5■□□□□ 0.39
UPF1-208ENST00000600012 KIF7Q2M1P5 1343 aa17.49■□□□□ 0.39
UPF1-208ENST00000600012 PTGER2P43116 358 aa17.49■□□□□ 0.39
UPF1-208ENST00000600012 SLC24A1O60721 1099 aa17.48■□□□□ 0.39
UPF1-208ENST00000600012 IP6K1Q92551 441 aa17.48■□□□□ 0.39
UPF1-208ENST00000600012 DIEXFQ68CQ4 756 aaKnown RBP17.47■□□□□ 0.39
UPF1-208ENST00000600012 MTFR1LQ9H019 292 aa17.47■□□□□ 0.39
UPF1-208ENST00000600012 ATF5Q9Y2D1 282 aaPredicted RBP17.47■□□□□ 0.39
UPF1-208ENST00000600012 DDX10Q13206 875 aaKnown RBP17.46■□□□□ 0.39
UPF1-208ENST00000600012 POLR3GLQ9BT43 218 aa17.46■□□□□ 0.39
UPF1-208ENST00000600012 COG3Q96JB2 828 aa17.45■□□□□ 0.38
UPF1-208ENST00000600012 TMF1P82094 1093 aa17.44■□□□□ 0.38
UPF1-208ENST00000600012 LTV1Q96GA3 475 aaPredicted RBP17.44■□□□□ 0.38
UPF1-208ENST00000600012 MAP3K19Q56UN5 1328 aa17.44■□□□□ 0.38
UPF1-208ENST00000600012 QSER1Q2KHR3 1735 aa17.44■□□□□ 0.38
UPF1-208ENST00000600012 RGPD2P0DJD1 1756 aa17.43■□□□□ 0.38
UPF1-208ENST00000600012 SGIP1Q9BQI5 828 aa17.43■□□□□ 0.38
UPF1-208ENST00000600012 ANKRD36BQ8N2N9 1353 aa17.42■□□□□ 0.38
UPF1-208ENST00000600012 DOT1LQ8TEK3 1739 aa17.42■□□□□ 0.38
UPF1-208ENST00000600012 HOXC9P31274 260 aa17.42■□□□□ 0.38
UPF1-208ENST00000600012 DDX54Q8TDD1 881 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms