RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CASZ1Q86V15 1759 aa12.55□□□□□ -0.4
SHKBP1-220ENST00000599716 MAP3K5Q99683 1374 aa12.55□□□□□ -0.4
SHKBP1-220ENST00000599716 SOX12O15370 315 aa12.54□□□□□ -0.4
SHKBP1-220ENST00000599716 CABP1Q9NZU7 370 aa12.54□□□□□ -0.4
SHKBP1-220ENST00000599716 CENPJQ9HC77 1338 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-220ENST00000599716 CPDO75976 1380 aa12.54□□□□□ -0.4
SHKBP1-220ENST00000599716 NLRP6P59044 892 aa12.53□□□□□ -0.4
SHKBP1-220ENST00000599716 NLRP13Q86W25 1043 aa12.53□□□□□ -0.4
SHKBP1-220ENST00000599716 LRRC37A3O60309 1634 aa12.52□□□□□ -0.4
SHKBP1-220ENST00000599716 PIK3C2AO00443 1686 aa12.52□□□□□ -0.4
SHKBP1-220ENST00000599716 PARP4Q9UKK3 1724 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-220ENST00000599716 GPR162Q16538 588 aa12.52□□□□□ -0.41
SHKBP1-220ENST00000599716 ANO8Q9HCE9 1232 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-220ENST00000599716 USP6P35125 1406 aa12.52□□□□□ -0.41
SHKBP1-220ENST00000599716 RGPD5Q99666 1765 aa12.51□□□□□ -0.41
SHKBP1-220ENST00000599716 PDGFDQ9GZP0 370 aaPredicted RBP12.51□□□□□ -0.41
SHKBP1-220ENST00000599716 AXIN2Q9Y2T1 843 aa12.51□□□□□ -0.41
SHKBP1-220ENST00000599716 CRB1P82279 1406 aa12.51□□□□□ -0.41
SHKBP1-220ENST00000599716 PEAK1Q9H792 1746 aa12.51□□□□□ -0.41
SHKBP1-220ENST00000599716 COL13A1Q5TAT6 717 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 L3MBTL2Q969R5 705 aa12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 SIN3AQ96ST3 1273 aa12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 ATF5Q9Y2D1 282 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 SLIT3O75094 1523 aa12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 COL18A1P39060 1754 aa12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 SBF2Q86WG5 1849 aa12.5□□□□□ -0.41
SHKBP1-220ENST00000599716 TOM1L2Q6ZVM7 507 aa12.49□□□□□ -0.41
SHKBP1-220ENST00000599716 TNS4Q8IZW8 715 aa12.49□□□□□ -0.41
SHKBP1-220ENST00000599716 SGIP1Q9BQI5 828 aa12.49□□□□□ -0.41
SHKBP1-220ENST00000599716 MTFR1LQ9H019 292 aa12.48□□□□□ -0.41
SHKBP1-220ENST00000599716 THRAP3Q9Y2W1 955 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-220ENST00000599716 WNK3Q9BYP7 1800 aa12.48□□□□□ -0.41
SHKBP1-220ENST00000599716 OVOS2A0A0G2JMS6 1433 aa12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 OVOS2A0A0J9YW53 1432 aa12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 OVOS2Q6IE36 1432 aa12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 NEUROD1Q13562 356 aa12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 DDB1Q16531 1140 aa12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 MARCH10Q8NA82 808 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 TRPM1Q7Z4N2 1603 aa12.47□□□□□ -0.41
SHKBP1-220ENST00000599716 ATP10DQ9P241 1426 aa12.46□□□□□ -0.41
SHKBP1-220ENST00000599716 AATKQ6ZMQ8 1374 aa12.46□□□□□ -0.41
SHKBP1-220ENST00000599716 ARXQ96QS3 562 aa12.46□□□□□ -0.41
SHKBP1-220ENST00000599716 RGPD3A6NKT7 1758 aaPredicted RBP12.46□□□□□ -0.42
SHKBP1-220ENST00000599716 RGPD4Q7Z3J3 1758 aa12.46□□□□□ -0.42
SHKBP1-220ENST00000599716 TTC21BQ7Z4L5 1316 aa12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 C11orf95C9JLR9 678 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 PLSCR1O15162 318 aa12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 PROM2Q8N271 834 aa12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 GPBP1L1Q9HC44 474 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 AKAP12Q02952 1782 aa12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 CPSF1Q10570 1443 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-220ENST00000599716 WDR17Q8IZU2 1322 aa12.44□□□□□ -0.42
SHKBP1-220ENST00000599716 CSB-PGBD3P0DP91 1061 aa12.44□□□□□ -0.42
SHKBP1-220ENST00000599716 APLP1P51693 650 aa12.44□□□□□ -0.42
SHKBP1-220ENST00000599716 BCL11BQ9C0K0 894 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-220ENST00000599716 EVC2Q86UK5 1308 aa12.43□□□□□ -0.42
SHKBP1-220ENST00000599716 MAPK8IP2Q13387 824 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-220ENST00000599716 ARHGEF25Q86VW2 580 aa12.43□□□□□ -0.42
SHKBP1-220ENST00000599716 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHKBP1-220ENST00000599716 DNAJC5GQ8N7S2 189 aa12.43□□□□□ -0.42
SHKBP1-220ENST00000599716 ROCK2O75116 1388 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-220ENST00000599716 NFAT5O94916 1531 aa12.42□□□□□ -0.42
SHKBP1-220ENST00000599716 ACSBG1Q96GR2 724 aa12.41□□□□□ -0.42
SHKBP1-220ENST00000599716 BRD4O60885 1362 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-220ENST00000599716 KTN1Q86UP2 1357 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-220ENST00000599716 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
SHKBP1-220ENST00000599716 GRIN3BO60391 1043 aa12.39□□□□□ -0.43
SHKBP1-220ENST00000599716 TXNRD1Q16881 649 aa12.39□□□□□ -0.43
SHKBP1-220ENST00000599716 NME9Q86XW9 330 aa12.39□□□□□ -0.43
SHKBP1-220ENST00000599716 PELP1Q8IZL8 1130 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-220ENST00000599716 CARD10Q9BWT7 1032 aa12.39□□□□□ -0.43
SHKBP1-220ENST00000599716 MON2Q7Z3U7 1717 aa12.39□□□□□ -0.43
SHKBP1-220ENST00000599716 SLC15A2Q16348 729 aa12.38□□□□□ -0.43
SHKBP1-220ENST00000599716 KCNH5Q8NCM2 988 aa12.38□□□□□ -0.43
SHKBP1-220ENST00000599716 KAT6BQ8WYB5 2073 aa12.38□□□□□ -0.43
SHKBP1-220ENST00000599716 EXOC5O00471 708 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 TMC1Q8TDI8 760 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 ZNF692Q9BU19 519 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 NLRP2Q9NX02 1062 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 ADCY9O60503 1353 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 CD163L1Q9NR16 1453 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 LTN1O94822 1766 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 TNS2Q63HR2 1409 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 TTC21AQ8NDW8 1320 aa12.37□□□□□ -0.43
SHKBP1-220ENST00000599716 JMYQ8N9B5 988 aa12.35□□□□□ -0.43
SHKBP1-220ENST00000599716 SLC12A5Q9H2X9 1139 aa12.35□□□□□ -0.43
SHKBP1-220ENST00000599716 NHSQ6T4R5 1651 aa12.35□□□□□ -0.43
SHKBP1-220ENST00000599716 ERBB3P21860 1342 aa12.35□□□□□ -0.43
SHKBP1-220ENST00000599716 SBNO2Q9Y2G9 1366 aa12.34□□□□□ -0.43
SHKBP1-220ENST00000599716 FBLN1P23142 703 aa12.34□□□□□ -0.43
SHKBP1-220ENST00000599716 CDCA7Q9BWT1 371 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-220ENST00000599716 BTAF1O14981 1849 aa12.34□□□□□ -0.43
SHKBP1-220ENST00000599716 CCDC7Q96M83 1385 aa12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 KCNQ4P56696 695 aa12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 ANKRD24Q8TF21 1146 aa12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 LTV1Q96GA3 475 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 CARD11Q9BXL7 1154 aa12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 BCL9O00512 1426 aa12.33□□□□□ -0.44
SHKBP1-220ENST00000599716 YBX3P16989 372 aaKnown RBP eCLIP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms