RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PARD3Q8TEW0 1356 aa13.83□□□□□ -0.19
VRK3-216ENST00000599342 COL18A1P39060 1754 aa13.83□□□□□ -0.19
VRK3-216ENST00000599342 DDB1Q16531 1140 aa13.83□□□□□ -0.2
VRK3-216ENST00000599342 TERF2IPQ9NYB0 399 aa13.83□□□□□ -0.2
VRK3-216ENST00000599342 AXIN2Q9Y2T1 843 aa13.83□□□□□ -0.2
VRK3-216ENST00000599342 SRCAPQ6ZRS2 3230 aa13.83□□□□□ -0.2
VRK3-216ENST00000599342 NFAT5O94916 1531 aa13.83□□□□□ -0.2
VRK3-216ENST00000599342 OVOS2A0A0G2JMS6 1433 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 OVOS2A0A0J9YW53 1432 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 OVOS2Q6IE36 1432 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 CD163L1Q9NR16 1453 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 ABCC6O95255 1503 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 CAMKK2Q96RR4 588 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 CDCA7Q9BWT1 371 aaPredicted RBP13.82□□□□□ -0.2
VRK3-216ENST00000599342 LRRC37A3O60309 1634 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 USP31Q70CQ4 1352 aa13.82□□□□□ -0.2
VRK3-216ENST00000599342 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
VRK3-216ENST00000599342 SLC24A1O60721 1099 aa13.81□□□□□ -0.2
VRK3-216ENST00000599342 R3HDM1Q15032 1099 aaKnown RBP13.81□□□□□ -0.2
VRK3-216ENST00000599342 NME9Q86XW9 330 aa13.81□□□□□ -0.2
VRK3-216ENST00000599342 PUS7Q96PZ0 661 aaKnown RBP13.81□□□□□ -0.2
VRK3-216ENST00000599342 SLC12A5Q9H2X9 1139 aa13.81□□□□□ -0.2
VRK3-216ENST00000599342 LRP5O75197 1615 aa13.81□□□□□ -0.2
VRK3-216ENST00000599342 CARD10Q9BWT7 1032 aa13.8□□□□□ -0.2
VRK3-216ENST00000599342 A0A1W2PP64 1363 aa13.8□□□□□ -0.2
VRK3-216ENST00000599342 NINLQ9Y2I6 1382 aa13.8□□□□□ -0.2
VRK3-216ENST00000599342 USP54Q70EL1 1684 aa13.79□□□□□ -0.2
VRK3-216ENST00000599342 WNK3Q9BYP7 1800 aa13.79□□□□□ -0.2
VRK3-216ENST00000599342 ST20-MTHFSA0A0A6YYL1 179 aa13.79□□□□□ -0.2
VRK3-216ENST00000599342 CCDC7Q96M83 1385 aa13.79□□□□□ -0.2
VRK3-216ENST00000599342 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
VRK3-216ENST00000599342 NBPF14Q5TI25 921 aa13.77□□□□□ -0.21
VRK3-216ENST00000599342 RREB1Q92766 1687 aa13.77□□□□□ -0.21
VRK3-216ENST00000599342 TESK2Q96S53 571 aa13.77□□□□□ -0.21
VRK3-216ENST00000599342 PEAK1Q9H792 1746 aa13.77□□□□□ -0.21
VRK3-216ENST00000599342 ERBB3P21860 1342 aa13.76□□□□□ -0.21
VRK3-216ENST00000599342 USP47Q96K76 1375 aa13.75□□□□□ -0.21
VRK3-216ENST00000599342 EXOC5O00471 708 aa13.75□□□□□ -0.21
VRK3-216ENST00000599342 TMF1P82094 1093 aa13.75□□□□□ -0.21
VRK3-216ENST00000599342 NLRP2Q9NX02 1062 aa13.75□□□□□ -0.21
VRK3-216ENST00000599342 LTN1O94822 1766 aa13.75□□□□□ -0.21
VRK3-216ENST00000599342 NUP188Q5SRE5 1749 aa13.75□□□□□ -0.21
VRK3-216ENST00000599342 TNS2Q63HR2 1409 aa13.74□□□□□ -0.21
VRK3-216ENST00000599342 MARCH10Q8NA82 808 aaPredicted RBP13.74□□□□□ -0.21
VRK3-216ENST00000599342 COG3Q96JB2 828 aa13.74□□□□□ -0.21
VRK3-216ENST00000599342 BCL11BQ9C0K0 894 aaPredicted RBP13.74□□□□□ -0.21
VRK3-216ENST00000599342 BCL9O00512 1426 aa13.73□□□□□ -0.21
VRK3-216ENST00000599342 PLSCR1O15162 318 aa13.73□□□□□ -0.21
VRK3-216ENST00000599342 ANKRD24Q8TF21 1146 aa13.73□□□□□ -0.21
VRK3-216ENST00000599342 ANKRD36BQ8N2N9 1353 aa13.72□□□□□ -0.21
VRK3-216ENST00000599342 SBF2Q86WG5 1849 aa13.72□□□□□ -0.21
VRK3-216ENST00000599342 RGPD3A6NKT7 1758 aaPredicted RBP13.72□□□□□ -0.21
VRK3-216ENST00000599342 RGPD4Q7Z3J3 1758 aa13.72□□□□□ -0.21
VRK3-216ENST00000599342 IL2RBP14784 551 aa13.71□□□□□ -0.21
VRK3-216ENST00000599342 CDCA8Q53HL2 280 aa13.71□□□□□ -0.21
VRK3-216ENST00000599342 IP6K1Q92551 441 aa13.7□□□□□ -0.22
VRK3-216ENST00000599342 TIMELESSQ9UNS1 1208 aa13.69□□□□□ -0.22
VRK3-216ENST00000599342 CLSPNQ9HAW4 1339 aa13.68□□□□□ -0.22
VRK3-216ENST00000599342 AMPHP49418 695 aa13.68□□□□□ -0.22
VRK3-216ENST00000599342 PTF1AQ7RTS3 328 aa13.68□□□□□ -0.22
VRK3-216ENST00000599342 LTV1Q96GA3 475 aaPredicted RBP13.68□□□□□ -0.22
VRK3-216ENST00000599342 PCGF6Q9BYE7 350 aa13.68□□□□□ -0.22
VRK3-216ENST00000599342 FAM208AQ9UK61 1670 aaKnown RBP13.68□□□□□ -0.22
VRK3-216ENST00000599342 MAP3K19Q56UN5 1328 aa13.67□□□□□ -0.22
VRK3-216ENST00000599342 HOXC9P31274 260 aa13.66□□□□□ -0.22
VRK3-216ENST00000599342 ACSBG1Q96GR2 724 aa13.66□□□□□ -0.22
VRK3-216ENST00000599342 NHSQ6T4R5 1651 aa13.66□□□□□ -0.22
VRK3-216ENST00000599342 KCNQ2O43526 872 aa13.65□□□□□ -0.22
VRK3-216ENST00000599342 TXNRD1Q16881 649 aa13.65□□□□□ -0.22
VRK3-216ENST00000599342 GGNBP2Q9H3C7 697 aa13.65□□□□□ -0.22
VRK3-216ENST00000599342 SPON1Q9HCB6 807 aa13.65□□□□□ -0.22
VRK3-216ENST00000599342 PPP1R1BQ9UD71 204 aaPredicted RBP13.65□□□□□ -0.22
VRK3-216ENST00000599342 RTL1A6NKG5 1358 aa13.65□□□□□ -0.22
VRK3-216ENST00000599342 FYB1O15117 783 aa13.64□□□□□ -0.23
VRK3-216ENST00000599342 ANO8Q9HCE9 1232 aaPredicted RBP13.64□□□□□ -0.23
VRK3-216ENST00000599342 SMG6Q86US8 1419 aaKnown RBP13.64□□□□□ -0.23
VRK3-216ENST00000599342 FBLN1P23142 703 aa13.63□□□□□ -0.23
VRK3-216ENST00000599342 RRS1Q15050 365 aaKnown RBP13.63□□□□□ -0.23
VRK3-216ENST00000599342 PROM2Q8N271 834 aa13.63□□□□□ -0.23
VRK3-216ENST00000599342 STK32BQ9NY57 414 aa13.63□□□□□ -0.23
VRK3-216ENST00000599342 DDX54Q8TDD1 881 aaKnown RBP13.62□□□□□ -0.23
VRK3-216ENST00000599342 KIF20BQ96Q89 1820 aa13.62□□□□□ -0.23
VRK3-216ENST00000599342 NSD3Q9BZ95 1437 aa13.61□□□□□ -0.23
VRK3-216ENST00000599342 SLC15A2Q16348 729 aa13.6□□□□□ -0.23
VRK3-216ENST00000599342 MYOM1P52179 1685 aa13.59□□□□□ -0.23
VRK3-216ENST00000599342 FLT4P35916 1363 aa13.59□□□□□ -0.23
VRK3-216ENST00000599342 CASZ1Q86V15 1759 aa13.59□□□□□ -0.23
VRK3-216ENST00000599342 SYTL4Q96C24 671 aaPredicted RBP13.59□□□□□ -0.23
VRK3-216ENST00000599342 BTAF1O14981 1849 aa13.59□□□□□ -0.23
VRK3-216ENST00000599342 MEGF6O75095 1541 aa13.59□□□□□ -0.23
VRK3-216ENST00000599342 KIF24Q5T7B8 1368 aa13.58□□□□□ -0.23
VRK3-216ENST00000599342 ZCRB1Q8TBF4 217 aaKnown RBP13.58□□□□□ -0.24
VRK3-216ENST00000599342 RAPGEF4Q8WZA2 1011 aa13.58□□□□□ -0.24
VRK3-216ENST00000599342 POLR3GLQ9BT43 218 aa13.58□□□□□ -0.24
VRK3-216ENST00000599342 CGNL1Q0VF96 1302 aa13.58□□□□□ -0.24
VRK3-216ENST00000599342 INSRP06213 1382 aa13.58□□□□□ -0.24
VRK3-216ENST00000599342 ZBTB7AO95365 584 aa13.57□□□□□ -0.24
VRK3-216ENST00000599342 NBPF6Q5VWK0 638 aa13.57□□□□□ -0.24
VRK3-216ENST00000599342 USHBP1Q8N6Y0 703 aa13.57□□□□□ -0.24
VRK3-216ENST00000599342 CCER1Q8TC90 406 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms