RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 KRT27Q7Z3Y8 459 aa13.53□□□□□ -0.24
VRK3-215ENST00000599138 RGPD5Q99666 1765 aa13.53□□□□□ -0.24
VRK3-215ENST00000599138 SOX12O15370 315 aa13.52□□□□□ -0.25
VRK3-215ENST00000599138 TCP11L2Q8N4U5 519 aa13.52□□□□□ -0.25
VRK3-215ENST00000599138 CRB1P82279 1406 aa13.52□□□□□ -0.25
VRK3-215ENST00000599138 WDR17Q8IZU2 1322 aa13.51□□□□□ -0.25
VRK3-215ENST00000599138 ZBTB7CA1YPR0 619 aa13.51□□□□□ -0.25
VRK3-215ENST00000599138 CCDC125Q86Z20 511 aa13.51□□□□□ -0.25
VRK3-215ENST00000599138 CARD14Q9BXL6 1004 aa13.51□□□□□ -0.25
VRK3-215ENST00000599138 THRAP3Q9Y2W1 955 aaKnown RBP13.51□□□□□ -0.25
VRK3-215ENST00000599138 LTN1O94822 1766 aa13.5□□□□□ -0.25
VRK3-215ENST00000599138 FYB1O15117 783 aa13.5□□□□□ -0.25
VRK3-215ENST00000599138 USP35Q9P2H5 1018 aa13.5□□□□□ -0.25
VRK3-215ENST00000599138 COG3Q96JB2 828 aa13.49□□□□□ -0.25
VRK3-215ENST00000599138 A0A0G2JS52 829 aa13.48□□□□□ -0.25
VRK3-215ENST00000599138 MYT1Q01538 1121 aa13.48□□□□□ -0.25
VRK3-215ENST00000599138 BLMP54132 1417 aaPredicted RBP13.47□□□□□ -0.25
VRK3-215ENST00000599138 PARP4Q9UKK3 1724 aaKnown RBP13.47□□□□□ -0.25
VRK3-215ENST00000599138 C11orf95C9JLR9 678 aaPredicted RBP13.47□□□□□ -0.25
VRK3-215ENST00000599138 TOM1L2Q6ZVM7 507 aa13.47□□□□□ -0.25
VRK3-215ENST00000599138 CARD10Q9BWT7 1032 aa13.47□□□□□ -0.25
VRK3-215ENST00000599138 KIF20BQ96Q89 1820 aa13.47□□□□□ -0.25
VRK3-215ENST00000599138 NSD3Q9BZ95 1437 aa13.47□□□□□ -0.25
VRK3-215ENST00000599138 ERBB3P21860 1342 aa13.46□□□□□ -0.25
VRK3-215ENST00000599138 IP6K1Q92551 441 aa13.46□□□□□ -0.25
VRK3-215ENST00000599138 GGNBP2Q9H3C7 697 aa13.46□□□□□ -0.25
VRK3-215ENST00000599138 MAP3K19Q56UN5 1328 aa13.45□□□□□ -0.26
VRK3-215ENST00000599138 WNK3Q9BYP7 1800 aa13.45□□□□□ -0.26
VRK3-215ENST00000599138 DISP2A7MBM2 1401 aa13.45□□□□□ -0.26
VRK3-215ENST00000599138 CSB-PGBD3P0DP91 1061 aa13.44□□□□□ -0.26
VRK3-215ENST00000599138 FBLN1P23142 703 aa13.44□□□□□ -0.26
VRK3-215ENST00000599138 FAM182BQ5T319 152 aa13.44□□□□□ -0.26
VRK3-215ENST00000599138 CDCA7Q9BWT1 371 aaPredicted RBP13.44□□□□□ -0.26
VRK3-215ENST00000599138 CCDC7Q96M83 1385 aa13.44□□□□□ -0.26
VRK3-215ENST00000599138 LRRC37A3O60309 1634 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 HOXC9P31274 260 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 PDE3BQ13370 1112 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 FAM196AQ6ZSG2 479 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 ANKRD24Q8TF21 1146 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 POLR3GLQ9BT43 218 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 RTL1A6NKG5 1358 aa13.42□□□□□ -0.26
VRK3-215ENST00000599138 CGNL1Q0VF96 1302 aa13.41□□□□□ -0.26
VRK3-215ENST00000599138 PANK3Q9H999 370 aa13.41□□□□□ -0.26
VRK3-215ENST00000599138 RGPD1P0DJD0 1748 aa13.41□□□□□ -0.26
VRK3-215ENST00000599138 PEAK1Q9H792 1746 aa13.41□□□□□ -0.26
VRK3-215ENST00000599138 KIF7Q2M1P5 1343 aa13.4□□□□□ -0.26
VRK3-215ENST00000599138 AMPHP49418 695 aa13.4□□□□□ -0.26
VRK3-215ENST00000599138 RRS1Q15050 365 aaKnown RBP13.4□□□□□ -0.26
VRK3-215ENST00000599138 DDB1Q16531 1140 aa13.4□□□□□ -0.26
VRK3-215ENST00000599138 DEFB132Q7Z7B7 95 aa13.4□□□□□ -0.26
VRK3-215ENST00000599138 NLRP2Q9NX02 1062 aa13.4□□□□□ -0.26
VRK3-215ENST00000599138 KIF24Q5T7B8 1368 aa13.4□□□□□ -0.26
VRK3-215ENST00000599138 FAM208AQ9UK61 1670 aaKnown RBP13.4□□□□□ -0.26
VRK3-215ENST00000599138 TNS1Q9HBL0 1735 aaKnown RBP13.39□□□□□ -0.27
VRK3-215ENST00000599138 SF3B2Q13435 895 aaKnown RBP13.39□□□□□ -0.27
VRK3-215ENST00000599138 BCL9O00512 1426 aa13.39□□□□□ -0.27
VRK3-215ENST00000599138 ANKRD26Q9UPS8 1709 aa13.38□□□□□ -0.27
VRK3-215ENST00000599138 OVOS2A0A0G2JMS6 1433 aa13.38□□□□□ -0.27
VRK3-215ENST00000599138 MAP2P11137 1827 aaKnown RBP13.37□□□□□ -0.27
VRK3-215ENST00000599138 INSRP06213 1382 aa13.37□□□□□ -0.27
VRK3-215ENST00000599138 FLT4P35916 1363 aa13.37□□□□□ -0.27
VRK3-215ENST00000599138 MARCH10Q8NA82 808 aaPredicted RBP13.37□□□□□ -0.27
VRK3-215ENST00000599138 SBF2Q86WG5 1849 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 RGPD2P0DJD1 1756 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 EXOC5O00471 708 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 TRIM37O94972 964 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 IL2RBP14784 551 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 BAG6P46379 1132 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 HSP90AB2PQ58FF8 381 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 LTV1Q96GA3 475 aaPredicted RBP13.36□□□□□ -0.27
VRK3-215ENST00000599138 TNS2Q63HR2 1409 aa13.36□□□□□ -0.27
VRK3-215ENST00000599138 NSD2O96028 1365 aa13.35□□□□□ -0.27
VRK3-215ENST00000599138 EMILIN1Q9Y6C2 1016 aa13.35□□□□□ -0.27
VRK3-215ENST00000599138 NBPF6Q5VWK0 638 aa13.34□□□□□ -0.27
VRK3-215ENST00000599138 NBPF4Q96M43 638 aa13.34□□□□□ -0.27
VRK3-215ENST00000599138 CAMKK2Q96RR4 588 aa13.34□□□□□ -0.27
VRK3-215ENST00000599138 POLKQ9UBT6 870 aa13.34□□□□□ -0.27
VRK3-215ENST00000599138 WASHC2AQ641Q2 1341 aa13.34□□□□□ -0.27
VRK3-215ENST00000599138 PER1O15534 1290 aaPredicted RBP13.33□□□□□ -0.28
VRK3-215ENST00000599138 EN1Q05925 392 aaPredicted RBP13.33□□□□□ -0.28
VRK3-215ENST00000599138 AMER1Q5JTC6 1135 aaPredicted RBP13.33□□□□□ -0.28
VRK3-215ENST00000599138 SMG6Q86US8 1419 aaKnown RBP13.32□□□□□ -0.28
VRK3-215ENST00000599138 KNSTRNQ9Y448 316 aa13.32□□□□□ -0.28
VRK3-215ENST00000599138 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
VRK3-215ENST00000599138 KAT6BQ8WYB5 2073 aa13.32□□□□□ -0.28
VRK3-215ENST00000599138 NCAPD2Q15021 1401 aa13.31□□□□□ -0.28
VRK3-215ENST00000599138 APBA3O96018 575 aa13.31□□□□□ -0.28
VRK3-215ENST00000599138 BCL11BQ9C0K0 894 aaPredicted RBP13.31□□□□□ -0.28
VRK3-215ENST00000599138 SRCAPQ6ZRS2 3230 aa13.31□□□□□ -0.28
VRK3-215ENST00000599138 MEGF6O75095 1541 aa13.3□□□□□ -0.28
VRK3-215ENST00000599138 EZH2Q15910 746 aaKnown RBP13.3□□□□□ -0.28
VRK3-215ENST00000599138 PTF1AQ7RTS3 328 aa13.3□□□□□ -0.28
VRK3-215ENST00000599138 TNNT2P45379 298 aaPredicted RBP13.29□□□□□ -0.28
VRK3-215ENST00000599138 SHANK3Q9BYB0 1731 aa13.29□□□□□ -0.28
VRK3-215ENST00000599138 RGPD3A6NKT7 1758 aaPredicted RBP13.29□□□□□ -0.28
VRK3-215ENST00000599138 RGPD4Q7Z3J3 1758 aa13.29□□□□□ -0.28
VRK3-215ENST00000599138 RREB1Q92766 1687 aa13.28□□□□□ -0.28
VRK3-215ENST00000599138 PLSCR1O15162 318 aa13.28□□□□□ -0.28
VRK3-215ENST00000599138 PPM1GO15355 546 aaPredicted RBP13.28□□□□□ -0.28
VRK3-215ENST00000599138 MORC1Q86VD1 984 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms