RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 U2SURPO15042 1029 aaKnown RBP20.55■□□□□ 0.88
UPF1-206ENST00000598471 HOXC9P31274 260 aa20.55■□□□□ 0.88
UPF1-206ENST00000598471 ARHGEF25Q86VW2 580 aa20.55■□□□□ 0.88
UPF1-206ENST00000598471 ZBTB7CA1YPR0 619 aa20.54■□□□□ 0.88
UPF1-206ENST00000598471 U2AF1L5P0DN76 240 aaPredicted RBP20.54■□□□□ 0.88
UPF1-206ENST00000598471 HNRNPUQ00839 825 aaKnown RBP eCLIP20.54■□□□□ 0.88
UPF1-206ENST00000598471 U2AF1Q01081 240 aaKnown RBP eCLIP20.54■□□□□ 0.88
UPF1-206ENST00000598471 IP6K1Q92551 441 aa20.54■□□□□ 0.88
UPF1-206ENST00000598471 CABLES1Q8TDN4 633 aa20.53■□□□□ 0.88
UPF1-206ENST00000598471 ABCC6O95255 1503 aa20.53■□□□□ 0.88
UPF1-206ENST00000598471 CPDO75976 1380 aa20.52■□□□□ 0.88
UPF1-206ENST00000598471 IL13P35225 146 aa20.52■□□□□ 0.88
UPF1-206ENST00000598471 HSP90AB2PQ58FF8 381 aa20.52■□□□□ 0.88
UPF1-206ENST00000598471 PNNQ9H307 717 aaKnown RBP20.52■□□□□ 0.88
UPF1-206ENST00000598471 SPATA31A6Q5VVP1 1343 aa20.52■□□□□ 0.87
UPF1-206ENST00000598471 ZC3H6P61129 1189 aaKnown RBP20.51■□□□□ 0.87
UPF1-206ENST00000598471 EIF4A2Q14240 407 aaKnown RBP20.51■□□□□ 0.87
UPF1-206ENST00000598471 COL22A1Q8NFW1 1626 aaPredicted RBP20.51■□□□□ 0.87
UPF1-206ENST00000598471 ABCA3Q99758 1704 aa20.5■□□□□ 0.87
UPF1-206ENST00000598471 KIAA0232Q92628 1395 aa20.47■□□□□ 0.87
UPF1-206ENST00000598471 NEFMP07197 916 aa20.47■□□□□ 0.87
UPF1-206ENST00000598471 RUNDC1Q96C34 613 aa20.47■□□□□ 0.87
UPF1-206ENST00000598471 PRDM11Q9NQV5 511 aa20.47■□□□□ 0.87
UPF1-206ENST00000598471 FCHSD2O94868 740 aa20.46■□□□□ 0.87
UPF1-206ENST00000598471 ADAMTS2O95450 1211 aa20.46■□□□□ 0.87
UPF1-206ENST00000598471 LRP6O75581 1613 aa20.45■□□□□ 0.87
UPF1-206ENST00000598471 CCDC146Q8IYE0 955 aa20.45■□□□□ 0.86
UPF1-206ENST00000598471 RGS17Q9UGC6 210 aaPredicted RBP20.45■□□□□ 0.86
UPF1-206ENST00000598471 MAPK8IP3Q9UPT6 1336 aa20.45■□□□□ 0.86
UPF1-206ENST00000598471 CENPBP07199 599 aaPredicted RBP20.44■□□□□ 0.86
UPF1-206ENST00000598471 MEX3CQ5U5Q3 659 aaKnown RBP20.44■□□□□ 0.86
UPF1-206ENST00000598471 LTV1Q96GA3 475 aaPredicted RBP20.44■□□□□ 0.86
UPF1-206ENST00000598471 ZBED9Q6R2W3 1325 aa20.44■□□□□ 0.86
UPF1-206ENST00000598471 NGEFQ8N5V2 710 aa20.43■□□□□ 0.86
UPF1-206ENST00000598471 RGPD1P0DJD0 1748 aa20.43■□□□□ 0.86
UPF1-206ENST00000598471 ANKRD24Q8TF21 1146 aa20.42■□□□□ 0.86
UPF1-206ENST00000598471 RSPH6AQ9H0K4 717 aa20.42■□□□□ 0.86
UPF1-206ENST00000598471 IGSF1Q8N6C5 1336 aa20.42■□□□□ 0.86
UPF1-206ENST00000598471 HMOX1P09601 288 aa20.41■□□□□ 0.86
UPF1-206ENST00000598471 CHRNA2Q15822 529 aa20.41■□□□□ 0.86
UPF1-206ENST00000598471 PHF23Q9BUL5 403 aaPredicted RBP20.41■□□□□ 0.86
UPF1-206ENST00000598471 COL18A1P39060 1754 aa20.41■□□□□ 0.86
UPF1-206ENST00000598471 PRKAR2BP31323 418 aa20.4■□□□□ 0.86
UPF1-206ENST00000598471 SULT6B1Q6IMI4 303 aa20.4■□□□□ 0.86
UPF1-206ENST00000598471 C8orf37Q96NL8 207 aa20.4■□□□□ 0.86
UPF1-206ENST00000598471 EYA1Q99502 592 aa20.4■□□□□ 0.86
UPF1-206ENST00000598471 ERBB3P21860 1342 aa20.39■□□□□ 0.85
UPF1-206ENST00000598471 AXIN2Q9Y2T1 843 aa20.39■□□□□ 0.85
UPF1-206ENST00000598471 KDRP35968 1356 aa20.38■□□□□ 0.85
UPF1-206ENST00000598471 APAF1O14727 1248 aa20.38■□□□□ 0.85
UPF1-206ENST00000598471 CSB-PGBD3P0DP91 1061 aa20.38■□□□□ 0.85
UPF1-206ENST00000598471 PLEKHF1Q96S99 279 aa20.38■□□□□ 0.85
UPF1-206ENST00000598471 FAM208AQ9UK61 1670 aaKnown RBP20.38■□□□□ 0.85
UPF1-206ENST00000598471 COL14A1Q05707 1796 aaKnown RBP20.37■□□□□ 0.85
UPF1-206ENST00000598471 TCP11L2Q8N4U5 519 aa20.37■□□□□ 0.85
UPF1-206ENST00000598471 NGLY1Q96IV0 654 aa20.37■□□□□ 0.85
UPF1-206ENST00000598471 LMO7Q8WWI1 1683 aa20.37■□□□□ 0.85
UPF1-206ENST00000598471 NCBP3Q53F19 620 aaKnown RBP20.36■□□□□ 0.85
UPF1-206ENST00000598471 AEBP1Q8IUX7 1158 aa20.36■□□□□ 0.85
UPF1-206ENST00000598471 POTEAQ6S8J7 498 aa20.35■□□□□ 0.85
UPF1-206ENST00000598471 RGPD5Q99666 1765 aa20.34■□□□□ 0.85
UPF1-206ENST00000598471 FAM83GA6ND36 823 aa20.34■□□□□ 0.85
UPF1-206ENST00000598471 NBPF6Q5VWK0 638 aa20.34■□□□□ 0.85
UPF1-206ENST00000598471 NBPF4Q96M43 638 aa20.34■□□□□ 0.85
UPF1-206ENST00000598471 SALL2Q9Y467 1007 aaPredicted RBP20.34■□□□□ 0.85
UPF1-206ENST00000598471 CAMTA1Q9Y6Y1 1673 aa20.34■□□□□ 0.85
UPF1-206ENST00000598471 AFF2P51816 1311 aa20.33■□□□□ 0.85
UPF1-206ENST00000598471 COL5A2P05997 1499 aaPredicted RBP20.33■□□□□ 0.85
UPF1-206ENST00000598471 NLRP2Q9NX02 1062 aa20.33■□□□□ 0.85
UPF1-206ENST00000598471 NCAPD2Q15021 1401 aa20.33■□□□□ 0.84
UPF1-206ENST00000598471 WDR17Q8IZU2 1322 aa20.32■□□□□ 0.84
UPF1-206ENST00000598471 SENP3-EIF4A1A0A087X0R7 540 aa20.32■□□□□ 0.84
UPF1-206ENST00000598471 EVA1CP58658 441 aa20.32■□□□□ 0.84
UPF1-206ENST00000598471 TMPOP42166 694 aaKnown RBP20.31■□□□□ 0.84
UPF1-206ENST00000598471 PDE3BQ13370 1112 aa20.31■□□□□ 0.84
UPF1-206ENST00000598471 NFE2L2Q16236 605 aa20.31■□□□□ 0.84
UPF1-206ENST00000598471 ILDR2Q71H61 639 aa20.31■□□□□ 0.84
UPF1-206ENST00000598471 FNBP4Q8N3X1 1017 aaPredicted RBP20.31■□□□□ 0.84
UPF1-206ENST00000598471 USHBP1Q8N6Y0 703 aa20.31■□□□□ 0.84
UPF1-206ENST00000598471 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
UPF1-206ENST00000598471 BTG4Q9NY30 223 aa20.3■□□□□ 0.84
UPF1-206ENST00000598471 RRP7AQ9Y3A4 280 aaKnown RBP20.3■□□□□ 0.84
UPF1-206ENST00000598471 NEUROD2Q15784 382 aa20.29■□□□□ 0.84
UPF1-206ENST00000598471 PHACTR3Q96KR7 559 aa20.29■□□□□ 0.84
UPF1-206ENST00000598471 RIPK4P57078 832 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 LMOD3Q0VAK6 560 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 ZNF772Q68DY9 489 aaPredicted RBP20.28■□□□□ 0.84
UPF1-206ENST00000598471 TOM1L2Q6ZVM7 507 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 GAS2L2Q8NHY3 880 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 QTRT2Q9H974 415 aaKnown RBP20.28■□□□□ 0.84
UPF1-206ENST00000598471 STRN4Q9NRL3 753 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 USP21Q9UK80 565 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 RGPD2P0DJD1 1756 aa20.28■□□□□ 0.84
UPF1-206ENST00000598471 PLEKHG2Q9H7P9 1386 aa20.27■□□□□ 0.84
UPF1-206ENST00000598471 RAPGEF4Q8WZA2 1011 aa20.27■□□□□ 0.84
UPF1-206ENST00000598471 PLCH1Q4KWH8 1693 aa20.26■□□□□ 0.83
UPF1-206ENST00000598471 ZNF521Q96K83 1311 aa20.26■□□□□ 0.83
UPF1-206ENST00000598471 CARD10Q9BWT7 1032 aa20.25■□□□□ 0.83
UPF1-206ENST00000598471 CRB1P82279 1406 aa20.25■□□□□ 0.83
UPF1-206ENST00000598471 TATP17735 454 aaPredicted RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms