RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CRB1P82279 1406 aa22.47■■□□□ 1.19
TRIM28-213ENST00000598355 SEPT12Q8IYM1 358 aa22.46■■□□□ 1.19
TRIM28-213ENST00000598355 NSD3Q9BZ95 1437 aa22.46■■□□□ 1.19
TRIM28-213ENST00000598355 STRN4Q9NRL3 753 aa22.45■■□□□ 1.18
TRIM28-213ENST00000598355 AXIN2Q9Y2T1 843 aa22.45■■□□□ 1.18
TRIM28-213ENST00000598355 LARP1Q6PKG0 1096 aaKnown RBP22.44■■□□□ 1.18
TRIM28-213ENST00000598355 CARD14Q9BXL6 1004 aa22.44■■□□□ 1.18
TRIM28-213ENST00000598355 LRRC37A3O60309 1634 aa22.43■■□□□ 1.18
TRIM28-213ENST00000598355 FYB1O15117 783 aa22.43■■□□□ 1.18
TRIM28-213ENST00000598355 FAM98CQ17RN3 349 aaKnown RBP22.43■■□□□ 1.18
TRIM28-213ENST00000598355 BARGINQ6ZT62 677 aa22.43■■□□□ 1.18
TRIM28-213ENST00000598355 WDR17Q8IZU2 1322 aa22.42■■□□□ 1.18
TRIM28-213ENST00000598355 BLMP54132 1417 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-213ENST00000598355 C11orf95C9JLR9 678 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-213ENST00000598355 SOX12O15370 315 aa22.41■■□□□ 1.18
TRIM28-213ENST00000598355 COG3Q96JB2 828 aa22.41■■□□□ 1.18
TRIM28-213ENST00000598355 EVA1CP58658 441 aa22.4■■□□□ 1.18
TRIM28-213ENST00000598355 THRAP3Q9Y2W1 955 aaKnown RBP22.4■■□□□ 1.18
TRIM28-213ENST00000598355 PEAK1Q9H792 1746 aa22.4■■□□□ 1.18
TRIM28-213ENST00000598355 ERBB3P21860 1342 aa22.38■■□□□ 1.17
TRIM28-213ENST00000598355 TCP11L2Q8N4U5 519 aa22.38■■□□□ 1.17
TRIM28-213ENST00000598355 DISP2A7MBM2 1401 aa22.38■■□□□ 1.17
TRIM28-213ENST00000598355 RTL1A6NKG5 1358 aa22.38■■□□□ 1.17
TRIM28-213ENST00000598355 ZBTB7CA1YPR0 619 aa22.37■■□□□ 1.17
TRIM28-213ENST00000598355 KRT27Q7Z3Y8 459 aa22.37■■□□□ 1.17
TRIM28-213ENST00000598355 TNS1Q9HBL0 1735 aaKnown RBP22.37■■□□□ 1.17
TRIM28-213ENST00000598355 GGNBP2Q9H3C7 697 aa22.36■■□□□ 1.17
TRIM28-213ENST00000598355 RGPD1P0DJD0 1748 aa22.36■■□□□ 1.17
TRIM28-213ENST00000598355 RGPD2P0DJD1 1756 aa22.35■■□□□ 1.17
TRIM28-213ENST00000598355 KIF7Q2M1P5 1343 aa22.35■■□□□ 1.17
TRIM28-213ENST00000598355 MAP3K19Q56UN5 1328 aa22.35■■□□□ 1.17
TRIM28-213ENST00000598355 MAP2P11137 1827 aaKnown RBP22.35■■□□□ 1.17
TRIM28-213ENST00000598355 CGNL1Q0VF96 1302 aa22.33■■□□□ 1.17
TRIM28-213ENST00000598355 IP6K1Q92551 441 aa22.33■■□□□ 1.17
TRIM28-213ENST00000598355 CARD10Q9BWT7 1032 aa22.33■■□□□ 1.17
TRIM28-213ENST00000598355 USP35Q9P2H5 1018 aa22.33■■□□□ 1.17
TRIM28-213ENST00000598355 KIF24Q5T7B8 1368 aa22.33■■□□□ 1.17
TRIM28-213ENST00000598355 CCDC7Q96M83 1385 aa22.33■■□□□ 1.17
TRIM28-213ENST00000598355 SBF2Q86WG5 1849 aa22.31■■□□□ 1.16
TRIM28-213ENST00000598355 A0A0G2JS52 829 aa22.31■■□□□ 1.16
TRIM28-213ENST00000598355 MYT1Q01538 1121 aa22.31■■□□□ 1.16
TRIM28-213ENST00000598355 TOM1L2Q6ZVM7 507 aa22.31■■□□□ 1.16
TRIM28-213ENST00000598355 NSD2O96028 1365 aa22.3■■□□□ 1.16
TRIM28-213ENST00000598355 POLR3GLQ9BT43 218 aa22.3■■□□□ 1.16
TRIM28-213ENST00000598355 FBLN1P23142 703 aa22.29■■□□□ 1.16
TRIM28-213ENST00000598355 HOXC9P31274 260 aa22.29■■□□□ 1.16
TRIM28-213ENST00000598355 CCDC125Q86Z20 511 aa22.29■■□□□ 1.16
TRIM28-213ENST00000598355 PANK3Q9H999 370 aa22.29■■□□□ 1.16
TRIM28-213ENST00000598355 ANKRD24Q8TF21 1146 aa22.28■■□□□ 1.16
TRIM28-213ENST00000598355 TNS2Q63HR2 1409 aa22.27■■□□□ 1.16
TRIM28-213ENST00000598355 FLT4P35916 1363 aa22.26■■□□□ 1.15
TRIM28-213ENST00000598355 RRS1Q15050 365 aaKnown RBP22.26■■□□□ 1.15
TRIM28-213ENST00000598355 CDCA7Q9BWT1 371 aaPredicted RBP22.26■■□□□ 1.15
TRIM28-213ENST00000598355 SHANK3Q9BYB0 1731 aa22.26■■□□□ 1.15
TRIM28-213ENST00000598355 SMG6Q86US8 1419 aaKnown RBP22.25■■□□□ 1.15
TRIM28-213ENST00000598355 CSB-PGBD3P0DP91 1061 aa22.25■■□□□ 1.15
TRIM28-213ENST00000598355 WASHC2AQ641Q2 1341 aa22.25■■□□□ 1.15
TRIM28-213ENST00000598355 INSRP06213 1382 aa22.25■■□□□ 1.15
TRIM28-213ENST00000598355 BCL9O00512 1426 aa22.24■■□□□ 1.15
TRIM28-213ENST00000598355 OVOS2A0A0G2JMS6 1433 aa22.23■■□□□ 1.15
TRIM28-213ENST00000598355 NCAPD2Q15021 1401 aa22.23■■□□□ 1.15
TRIM28-213ENST00000598355 AMPHP49418 695 aa22.22■■□□□ 1.15
TRIM28-213ENST00000598355 RGPD3A6NKT7 1758 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-213ENST00000598355 RGPD4Q7Z3J3 1758 aa22.21■■□□□ 1.15
TRIM28-213ENST00000598355 FAM182BQ5T319 152 aa22.21■■□□□ 1.15
TRIM28-213ENST00000598355 FAM196AQ6ZSG2 479 aa22.2■■□□□ 1.14
TRIM28-213ENST00000598355 NLRP2Q9NX02 1062 aa22.2■■□□□ 1.14
TRIM28-213ENST00000598355 PER1O15534 1290 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-213ENST00000598355 PDE3BQ13370 1112 aa22.19■■□□□ 1.14
TRIM28-213ENST00000598355 DDB1Q16531 1140 aa22.19■■□□□ 1.14
TRIM28-213ENST00000598355 AMER1Q5JTC6 1135 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-213ENST00000598355 EMILIN1Q9Y6C2 1016 aa22.19■■□□□ 1.14
TRIM28-213ENST00000598355 RREB1Q92766 1687 aa22.18■■□□□ 1.14
TRIM28-213ENST00000598355 NHSQ6T4R5 1651 aa22.17■■□□□ 1.14
TRIM28-213ENST00000598355 MEGF6O75095 1541 aa22.16■■□□□ 1.14
TRIM28-213ENST00000598355 NPC1L1Q9UHC9 1359 aa22.16■■□□□ 1.14
TRIM28-213ENST00000598355 IL2RBP14784 551 aa22.16■■□□□ 1.14
TRIM28-213ENST00000598355 HSP90AB2PQ58FF8 381 aa22.16■■□□□ 1.14
TRIM28-213ENST00000598355 POLKQ9UBT6 870 aa22.16■■□□□ 1.14
TRIM28-213ENST00000598355 PKD1L3Q7Z443 1732 aa22.16■■□□□ 1.14
TRIM28-213ENST00000598355 KNSTRNQ9Y448 316 aa22.15■■□□□ 1.14
TRIM28-213ENST00000598355 MARCH10Q8NA82 808 aaPredicted RBP22.14■■□□□ 1.13
TRIM28-213ENST00000598355 LTV1Q96GA3 475 aaPredicted RBP22.14■■□□□ 1.13
TRIM28-213ENST00000598355 NBPF6Q5VWK0 638 aa22.12■■□□□ 1.13
TRIM28-213ENST00000598355 NBPF4Q96M43 638 aa22.12■■□□□ 1.13
TRIM28-213ENST00000598355 NUP188Q5SRE5 1749 aa22.11■■□□□ 1.13
TRIM28-213ENST00000598355 SF3B2Q13435 895 aaKnown RBP22.11■■□□□ 1.13
TRIM28-213ENST00000598355 DEFB132Q7Z7B7 95 aa22.11■■□□□ 1.13
TRIM28-213ENST00000598355 EXOC5O00471 708 aa22.1■■□□□ 1.13
TRIM28-213ENST00000598355 TRIM37O94972 964 aa22.09■■□□□ 1.13
TRIM28-213ENST00000598355 BAG6P46379 1132 aa22.09■■□□□ 1.13
TRIM28-213ENST00000598355 DOT1LQ8TEK3 1739 aa22.09■■□□□ 1.13
TRIM28-213ENST00000598355 PARD3Q8TEW0 1356 aa22.08■■□□□ 1.12
TRIM28-213ENST00000598355 MORC1Q86VD1 984 aa22.07■■□□□ 1.12
TRIM28-213ENST00000598355 BTAF1O14981 1849 aa22.07■■□□□ 1.12
TRIM28-213ENST00000598355 PLEKHG2Q9H7P9 1386 aa22.07■■□□□ 1.12
TRIM28-213ENST00000598355 TNNT2P45379 298 aaPredicted RBP22.06■■□□□ 1.12
TRIM28-213ENST00000598355 PPM1GO15355 546 aaPredicted RBP22.04■■□□□ 1.12
TRIM28-213ENST00000598355 USHBP1Q8N6Y0 703 aa22.04■■□□□ 1.12
TRIM28-213ENST00000598355 KAT6BQ8WYB5 2073 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms