RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SPATA31A1Q5TZJ5 1347 aa19.19■□□□□ 0.66
UPF1-205ENST00000598209 FYB1O15117 783 aa19.18■□□□□ 0.66
UPF1-205ENST00000598209 ONECUT3O60422 494 aaPredicted RBP19.18■□□□□ 0.66
UPF1-205ENST00000598209 FAM98CQ17RN3 349 aaKnown RBP19.18■□□□□ 0.66
UPF1-205ENST00000598209 LARP1Q6PKG0 1096 aaKnown RBP19.18■□□□□ 0.66
UPF1-205ENST00000598209 SEPT12Q8IYM1 358 aa19.18■□□□□ 0.66
UPF1-205ENST00000598209 AXIN2Q9Y2T1 843 aa19.17■□□□□ 0.66
UPF1-205ENST00000598209 THSD7AQ9UPZ6 1657 aa19.17■□□□□ 0.66
UPF1-205ENST00000598209 A0A0G2JS52 829 aa19.16■□□□□ 0.66
UPF1-205ENST00000598209 MYT1Q01538 1121 aa19.16■□□□□ 0.66
UPF1-205ENST00000598209 GGNBP2Q9H3C7 697 aa19.16■□□□□ 0.66
UPF1-205ENST00000598209 USP35Q9P2H5 1018 aa19.15■□□□□ 0.66
UPF1-205ENST00000598209 KIF7Q2M1P5 1343 aa19.14■□□□□ 0.65
UPF1-205ENST00000598209 CRB1P82279 1406 aa19.14■□□□□ 0.65
UPF1-205ENST00000598209 UPF1Q92900 1129 aaKnown RBP eCLIP19.13■□□□□ 0.65
UPF1-205ENST00000598209 PANK3Q9H999 370 aa19.13■□□□□ 0.65
UPF1-205ENST00000598209 WNK3Q9BYP7 1800 aa19.12■□□□□ 0.65
UPF1-205ENST00000598209 ANKRD26Q9UPS8 1709 aa19.12■□□□□ 0.65
UPF1-205ENST00000598209 WDR17Q8IZU2 1322 aa19.12■□□□□ 0.65
UPF1-205ENST00000598209 TCP11L2Q8N4U5 519 aa19.12■□□□□ 0.65
UPF1-205ENST00000598209 CGNL1Q0VF96 1302 aa19.11■□□□□ 0.65
UPF1-205ENST00000598209 FBLN1P23142 703 aa19.11■□□□□ 0.65
UPF1-205ENST00000598209 BARGINQ6ZT62 677 aa19.11■□□□□ 0.65
UPF1-205ENST00000598209 TOM1L2Q6ZVM7 507 aa19.11■□□□□ 0.65
UPF1-205ENST00000598209 CSB-PGBD3P0DP91 1061 aa19.1■□□□□ 0.65
UPF1-205ENST00000598209 KRT27Q7Z3Y8 459 aa19.1■□□□□ 0.65
UPF1-205ENST00000598209 THRAP3Q9Y2W1 955 aaKnown RBP19.1■□□□□ 0.65
UPF1-205ENST00000598209 MAP3K19Q56UN5 1328 aa19.09■□□□□ 0.65
UPF1-205ENST00000598209 PARP4Q9UKK3 1724 aaKnown RBP19.08■□□□□ 0.65
UPF1-205ENST00000598209 IP6K1Q92551 441 aa19.08■□□□□ 0.64
UPF1-205ENST00000598209 BLMP54132 1417 aaPredicted RBP19.08■□□□□ 0.64
UPF1-205ENST00000598209 MAP2P11137 1827 aaKnown RBP19.07■□□□□ 0.64
UPF1-205ENST00000598209 ERBB3P21860 1342 aa19.07■□□□□ 0.64
UPF1-205ENST00000598209 AMPHP49418 695 aa19.07■□□□□ 0.64
UPF1-205ENST00000598209 RRS1Q15050 365 aaKnown RBP19.07■□□□□ 0.64
UPF1-205ENST00000598209 FAM208AQ9UK61 1670 aaKnown RBP19.07■□□□□ 0.64
UPF1-205ENST00000598209 CCDC7Q96M83 1385 aa19.06■□□□□ 0.64
UPF1-205ENST00000598209 ANKRD24Q8TF21 1146 aa19.06■□□□□ 0.64
UPF1-205ENST00000598209 CARD10Q9BWT7 1032 aa19.06■□□□□ 0.64
UPF1-205ENST00000598209 HOXC9P31274 260 aa19.05■□□□□ 0.64
UPF1-205ENST00000598209 PEAK1Q9H792 1746 aa19.05■□□□□ 0.64
UPF1-205ENST00000598209 RTL1A6NKG5 1358 aa19.05■□□□□ 0.64
UPF1-205ENST00000598209 RGPD2P0DJD1 1756 aa19.04■□□□□ 0.64
UPF1-205ENST00000598209 LRRC37A3O60309 1634 aa19.03■□□□□ 0.64
UPF1-205ENST00000598209 EP400Q96L91 3159 aa19.03■□□□□ 0.64
UPF1-205ENST00000598209 WASHC2AQ641Q2 1341 aa19.03■□□□□ 0.64
UPF1-205ENST00000598209 LTV1Q96GA3 475 aaPredicted RBP19.03■□□□□ 0.64
UPF1-205ENST00000598209 NLRP2Q9NX02 1062 aa19.03■□□□□ 0.64
UPF1-205ENST00000598209 KNSTRNQ9Y448 316 aa19.02■□□□□ 0.64
UPF1-205ENST00000598209 NSD2O96028 1365 aa19.02■□□□□ 0.64
UPF1-205ENST00000598209 PDE3BQ13370 1112 aa19.01■□□□□ 0.63
UPF1-205ENST00000598209 FAM182BQ5T319 152 aa19.01■□□□□ 0.63
UPF1-205ENST00000598209 KIF24Q5T7B8 1368 aa19■□□□□ 0.63
UPF1-205ENST00000598209 DISP2A7MBM2 1401 aa19■□□□□ 0.63
UPF1-205ENST00000598209 FLT4P35916 1363 aa18.99■□□□□ 0.63
UPF1-205ENST00000598209 CCDC125Q86Z20 511 aa18.99■□□□□ 0.63
UPF1-205ENST00000598209 CDCA7Q9BWT1 371 aaPredicted RBP18.99■□□□□ 0.63
UPF1-205ENST00000598209 EMILIN1Q9Y6C2 1016 aa18.99■□□□□ 0.63
UPF1-205ENST00000598209 RGPD1P0DJD0 1748 aa18.98■□□□□ 0.63
UPF1-205ENST00000598209 TNNT2P45379 298 aaPredicted RBP18.98■□□□□ 0.63
UPF1-205ENST00000598209 DDB1Q16531 1140 aa18.98■□□□□ 0.63
UPF1-205ENST00000598209 INSRP06213 1382 aa18.97■□□□□ 0.63
UPF1-205ENST00000598209 SMG6Q86US8 1419 aaKnown RBP18.97■□□□□ 0.63
UPF1-205ENST00000598209 PPM1GO15355 546 aaPredicted RBP18.96■□□□□ 0.63
UPF1-205ENST00000598209 HSP90AB2PQ58FF8 381 aa18.96■□□□□ 0.63
UPF1-205ENST00000598209 AMER1Q5JTC6 1135 aaPredicted RBP18.96■□□□□ 0.63
UPF1-205ENST00000598209 PER1O15534 1290 aaPredicted RBP18.95■□□□□ 0.62
UPF1-205ENST00000598209 FAM196AQ6ZSG2 479 aa18.95■□□□□ 0.62
UPF1-205ENST00000598209 MORC1Q86VD1 984 aa18.95■□□□□ 0.62
UPF1-205ENST00000598209 POLKQ9UBT6 870 aa18.95■□□□□ 0.62
UPF1-205ENST00000598209 TNS1Q9HBL0 1735 aaKnown RBP18.94■□□□□ 0.62
UPF1-205ENST00000598209 IL2RBP14784 551 aa18.94■□□□□ 0.62
UPF1-205ENST00000598209 SF3B2Q13435 895 aaKnown RBP18.94■□□□□ 0.62
UPF1-205ENST00000598209 SBF2Q86WG5 1849 aa18.94■□□□□ 0.62
UPF1-205ENST00000598209 TNS2Q63HR2 1409 aa18.93■□□□□ 0.62
UPF1-205ENST00000598209 EXOC5O00471 708 aa18.93■□□□□ 0.62
UPF1-205ENST00000598209 OVOS2A0A0G2JMS6 1433 aa18.91■□□□□ 0.62
UPF1-205ENST00000598209 NBPF6Q5VWK0 638 aa18.91■□□□□ 0.62
UPF1-205ENST00000598209 NBPF4Q96M43 638 aa18.91■□□□□ 0.62
UPF1-205ENST00000598209 TRIM37O94972 964 aa18.9■□□□□ 0.62
UPF1-205ENST00000598209 MARCH10Q8NA82 808 aaPredicted RBP18.9■□□□□ 0.62
UPF1-205ENST00000598209 ZEB1P37275 1124 aaPredicted RBP18.89■□□□□ 0.61
UPF1-205ENST00000598209 CC2D1BQ5T0F9 858 aaKnown RBP18.89■□□□□ 0.61
UPF1-205ENST00000598209 DEFB132Q7Z7B7 95 aa18.89■□□□□ 0.61
UPF1-205ENST00000598209 USHBP1Q8N6Y0 703 aa18.89■□□□□ 0.61
UPF1-205ENST00000598209 NPC1L1Q9UHC9 1359 aa18.88■□□□□ 0.61
UPF1-205ENST00000598209 SHANK3Q9BYB0 1731 aa18.88■□□□□ 0.61
UPF1-205ENST00000598209 MEGF6O75095 1541 aa18.87■□□□□ 0.61
UPF1-205ENST00000598209 BAG6P46379 1132 aa18.87■□□□□ 0.61
UPF1-205ENST00000598209 KAT6BQ8WYB5 2073 aa18.87■□□□□ 0.61
UPF1-205ENST00000598209 BCL9O00512 1426 aa18.85■□□□□ 0.61
UPF1-205ENST00000598209 CNGB1Q14028 1251 aaPredicted RBP18.85■□□□□ 0.61
UPF1-205ENST00000598209 EIF4A2Q14240 407 aaKnown RBP18.85■□□□□ 0.61
UPF1-205ENST00000598209 NCAPD2Q15021 1401 aa18.84■□□□□ 0.61
UPF1-205ENST00000598209 RAPGEF4Q8WZA2 1011 aa18.84■□□□□ 0.61
UPF1-205ENST00000598209 EYA1Q99502 592 aa18.83■□□□□ 0.6
UPF1-205ENST00000598209 APBA3O96018 575 aa18.82■□□□□ 0.6
UPF1-205ENST00000598209 TATP17735 454 aaPredicted RBP18.82■□□□□ 0.6
UPF1-205ENST00000598209 EN1Q05925 392 aaPredicted RBP18.82■□□□□ 0.6
UPF1-205ENST00000598209 ZCRB1Q8TBF4 217 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms