RNA–Protein interactions for RNA: ENST00000597724.6

SSBP4-204, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-204ENST00000597724 UPF1Q92900 1129 aaKnown RBP eCLIP23.2■■□□□ 1.3
SSBP4-204ENST00000597724 COG3Q96JB2 828 aa23.2■■□□□ 1.3
SSBP4-204ENST00000597724 EP400Q96L91 3159 aa23.18■■□□□ 1.3
SSBP4-204ENST00000597724 BRWD3Q6RI45 1802 aa23.17■■□□□ 1.3
SSBP4-204ENST00000597724 GGNBP2Q9H3C7 697 aa23.16■■□□□ 1.3
SSBP4-204ENST00000597724 USP35Q9P2H5 1018 aa23.16■■□□□ 1.3
SSBP4-204ENST00000597724 NSD3Q9BZ95 1437 aa23.16■■□□□ 1.3
SSBP4-204ENST00000597724 ABCC6O95255 1503 aa23.15■■□□□ 1.3
SSBP4-204ENST00000597724 A0A0G2JS52 829 aa23.15■■□□□ 1.3
SSBP4-204ENST00000597724 MYT1Q01538 1121 aa23.15■■□□□ 1.3
SSBP4-204ENST00000597724 RGPD5Q99666 1765 aa23.14■■□□□ 1.3
SSBP4-204ENST00000597724 BARGINQ6ZT62 677 aa23.14■■□□□ 1.29
SSBP4-204ENST00000597724 CRB1P82279 1406 aa23.14■■□□□ 1.29
SSBP4-204ENST00000597724 LTN1O94822 1766 aa23.14■■□□□ 1.29
SSBP4-204ENST00000597724 WDR17Q8IZU2 1322 aa23.13■■□□□ 1.29
SSBP4-204ENST00000597724 THSD7AQ9UPZ6 1657 aa23.13■■□□□ 1.29
SSBP4-204ENST00000597724 TCP11L2Q8N4U5 519 aa23.13■■□□□ 1.29
SSBP4-204ENST00000597724 THRAP3Q9Y2W1 955 aaKnown RBP23.13■■□□□ 1.29
SSBP4-204ENST00000597724 KRT27Q7Z3Y8 459 aa23.12■■□□□ 1.29
SSBP4-204ENST00000597724 KIF20BQ96Q89 1820 aa23.12■■□□□ 1.29
SSBP4-204ENST00000597724 TOM1L2Q6ZVM7 507 aa23.11■■□□□ 1.29
SSBP4-204ENST00000597724 FBLN1P23142 703 aa23.1■■□□□ 1.29
SSBP4-204ENST00000597724 PANK3Q9H999 370 aa23.1■■□□□ 1.29
SSBP4-204ENST00000597724 CGNL1Q0VF96 1302 aa23.09■■□□□ 1.29
SSBP4-204ENST00000597724 KIF7Q2M1P5 1343 aa23.09■■□□□ 1.29
SSBP4-204ENST00000597724 IP6K1Q92551 441 aa23.09■■□□□ 1.29
SSBP4-204ENST00000597724 MAP3K19Q56UN5 1328 aa23.08■■□□□ 1.29
SSBP4-204ENST00000597724 CSB-PGBD3P0DP91 1061 aa23.08■■□□□ 1.29
SSBP4-204ENST00000597724 CARD10Q9BWT7 1032 aa23.07■■□□□ 1.28
SSBP4-204ENST00000597724 ERBB3P21860 1342 aa23.07■■□□□ 1.28
SSBP4-204ENST00000597724 BLMP54132 1417 aaPredicted RBP23.06■■□□□ 1.28
SSBP4-204ENST00000597724 HOXC9P31274 260 aa23.04■■□□□ 1.28
SSBP4-204ENST00000597724 AMPHP49418 695 aa23.04■■□□□ 1.28
SSBP4-204ENST00000597724 RRS1Q15050 365 aaKnown RBP23.04■■□□□ 1.28
SSBP4-204ENST00000597724 ANKRD24Q8TF21 1146 aa23.04■■□□□ 1.28
SSBP4-204ENST00000597724 CCDC125Q86Z20 511 aa23.03■■□□□ 1.28
SSBP4-204ENST00000597724 PARP4Q9UKK3 1724 aaKnown RBP23.02■■□□□ 1.28
SSBP4-204ENST00000597724 FAM182BQ5T319 152 aa23.01■■□□□ 1.27
SSBP4-204ENST00000597724 NLRP2Q9NX02 1062 aa23.01■■□□□ 1.27
SSBP4-204ENST00000597724 RTL1A6NKG5 1358 aa23.01■■□□□ 1.27
SSBP4-204ENST00000597724 CCDC7Q96M83 1385 aa23.01■■□□□ 1.27
SSBP4-204ENST00000597724 PDE3BQ13370 1112 aa23■■□□□ 1.27
SSBP4-204ENST00000597724 CDCA7Q9BWT1 371 aaPredicted RBP22.99■■□□□ 1.27
SSBP4-204ENST00000597724 WASHC2AQ641Q2 1341 aa22.99■■□□□ 1.27
SSBP4-204ENST00000597724 LTV1Q96GA3 475 aaPredicted RBP22.98■■□□□ 1.27
SSBP4-204ENST00000597724 KNSTRNQ9Y448 316 aa22.98■■□□□ 1.27
SSBP4-204ENST00000597724 KIF24Q5T7B8 1368 aa22.98■■□□□ 1.27
SSBP4-204ENST00000597724 DISP2A7MBM2 1401 aa22.98■■□□□ 1.27
SSBP4-204ENST00000597724 WNK3Q9BYP7 1800 aa22.97■■□□□ 1.27
SSBP4-204ENST00000597724 ANKRD26Q9UPS8 1709 aa22.96■■□□□ 1.27
SSBP4-204ENST00000597724 DDB1Q16531 1140 aa22.96■■□□□ 1.27
SSBP4-204ENST00000597724 EMILIN1Q9Y6C2 1016 aa22.96■■□□□ 1.27
SSBP4-204ENST00000597724 NSD2O96028 1365 aa22.96■■□□□ 1.27
SSBP4-204ENST00000597724 FLT4P35916 1363 aa22.95■■□□□ 1.26
SSBP4-204ENST00000597724 FAM196AQ6ZSG2 479 aa22.95■■□□□ 1.26
SSBP4-204ENST00000597724 PEAK1Q9H792 1746 aa22.95■■□□□ 1.26
SSBP4-204ENST00000597724 FAM208AQ9UK61 1670 aaKnown RBP22.94■■□□□ 1.26
SSBP4-204ENST00000597724 LRRC37A3O60309 1634 aa22.94■■□□□ 1.26
SSBP4-204ENST00000597724 HSP90AB2PQ58FF8 381 aa22.94■■□□□ 1.26
SSBP4-204ENST00000597724 INSRP06213 1382 aa22.93■■□□□ 1.26
SSBP4-204ENST00000597724 PER1O15534 1290 aaPredicted RBP22.93■■□□□ 1.26
SSBP4-204ENST00000597724 MAP2P11137 1827 aaKnown RBP22.92■■□□□ 1.26
SSBP4-204ENST00000597724 POLKQ9UBT6 870 aa22.92■■□□□ 1.26
SSBP4-204ENST00000597724 EXOC5O00471 708 aa22.91■■□□□ 1.26
SSBP4-204ENST00000597724 IL2RBP14784 551 aa22.91■■□□□ 1.26
SSBP4-204ENST00000597724 TNNT2P45379 298 aaPredicted RBP22.91■■□□□ 1.26
SSBP4-204ENST00000597724 SF3B2Q13435 895 aaKnown RBP22.91■■□□□ 1.26
SSBP4-204ENST00000597724 AMER1Q5JTC6 1135 aaPredicted RBP22.91■■□□□ 1.26
SSBP4-204ENST00000597724 PPM1GO15355 546 aaPredicted RBP22.9■■□□□ 1.26
SSBP4-204ENST00000597724 RGPD2P0DJD1 1756 aa22.89■■□□□ 1.26
SSBP4-204ENST00000597724 NBPF6Q5VWK0 638 aa22.89■■□□□ 1.25
SSBP4-204ENST00000597724 MORC1Q86VD1 984 aa22.89■■□□□ 1.25
SSBP4-204ENST00000597724 NBPF4Q96M43 638 aa22.89■■□□□ 1.25
SSBP4-204ENST00000597724 SMG6Q86US8 1419 aaKnown RBP22.89■■□□□ 1.25
SSBP4-204ENST00000597724 MARCH10Q8NA82 808 aaPredicted RBP22.88■■□□□ 1.25
SSBP4-204ENST00000597724 TRIM37O94972 964 aa22.87■■□□□ 1.25
SSBP4-204ENST00000597724 DEFB132Q7Z7B7 95 aa22.87■■□□□ 1.25
SSBP4-204ENST00000597724 OVOS2A0A0G2JMS6 1433 aa22.87■■□□□ 1.25
SSBP4-204ENST00000597724 RGPD1P0DJD0 1748 aa22.87■■□□□ 1.25
SSBP4-204ENST00000597724 TNS2Q63HR2 1409 aa22.86■■□□□ 1.25
SSBP4-204ENST00000597724 BAG6P46379 1132 aa22.84■■□□□ 1.25
SSBP4-204ENST00000597724 TNS1Q9HBL0 1735 aaKnown RBP22.83■■□□□ 1.25
SSBP4-204ENST00000597724 USHBP1Q8N6Y0 703 aa22.83■■□□□ 1.25
SSBP4-204ENST00000597724 BCL9O00512 1426 aa22.82■■□□□ 1.24
SSBP4-204ENST00000597724 NPC1L1Q9UHC9 1359 aa22.81■■□□□ 1.24
SSBP4-204ENST00000597724 CC2D1BQ5T0F9 858 aaKnown RBP22.8■■□□□ 1.24
SSBP4-204ENST00000597724 SBF2Q86WG5 1849 aa22.8■■□□□ 1.24
SSBP4-204ENST00000597724 MEGF6O75095 1541 aa22.79■■□□□ 1.24
SSBP4-204ENST00000597724 APBA3O96018 575 aa22.79■■□□□ 1.24
SSBP4-204ENST00000597724 EN1Q05925 392 aaPredicted RBP22.79■■□□□ 1.24
SSBP4-204ENST00000597724 EIF4A2Q14240 407 aaKnown RBP22.78■■□□□ 1.24
SSBP4-204ENST00000597724 RAPGEF4Q8WZA2 1011 aa22.78■■□□□ 1.24
SSBP4-204ENST00000597724 EYA1Q99502 592 aa22.78■■□□□ 1.24
SSBP4-204ENST00000597724 NCAPD2Q15021 1401 aa22.77■■□□□ 1.24
SSBP4-204ENST00000597724 ZCRB1Q8TBF4 217 aaKnown RBP22.77■■□□□ 1.24
SSBP4-204ENST00000597724 BCL11BQ9C0K0 894 aaPredicted RBP22.76■■□□□ 1.23
SSBP4-204ENST00000597724 TATP17735 454 aaPredicted RBP22.75■■□□□ 1.23
SSBP4-204ENST00000597724 ZEB1P37275 1124 aaPredicted RBP22.75■■□□□ 1.23
SSBP4-204ENST00000597724 DDX54Q8TDD1 881 aaKnown RBP22.75■■□□□ 1.23
SSBP4-204ENST00000597724 CAMKK2Q96RR4 588 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms