RNA–Protein interactions for RNA: ENST00000596726.3

PNKP-209, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 637 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-209ENST00000596726 ABCC6O95255 1503 aa29.31■■■□□ 2.28
PNKP-209ENST00000596726 LTN1O94822 1766 aa29.31■■■□□ 2.28
PNKP-209ENST00000596726 EP400Q96L91 3159 aa29.3■■■□□ 2.28
PNKP-209ENST00000596726 CARD14Q9BXL6 1004 aa29.29■■■□□ 2.28
PNKP-209ENST00000596726 FYB1O15117 783 aa29.28■■■□□ 2.28
PNKP-209ENST00000596726 KIF20BQ96Q89 1820 aa29.27■■■□□ 2.28
PNKP-209ENST00000596726 BARGINQ6ZT62 677 aa29.27■■■□□ 2.28
PNKP-209ENST00000596726 COG3Q96JB2 828 aa29.27■■■□□ 2.28
PNKP-209ENST00000596726 C11orf95C9JLR9 678 aaPredicted RBP29.26■■■□□ 2.27
PNKP-209ENST00000596726 CRB1P82279 1406 aa29.26■■■□□ 2.27
PNKP-209ENST00000596726 KRT27Q7Z3Y8 459 aa29.25■■■□□ 2.27
PNKP-209ENST00000596726 USP35Q9P2H5 1018 aa29.25■■■□□ 2.27
PNKP-209ENST00000596726 TCP11L2Q8N4U5 519 aa29.24■■■□□ 2.27
PNKP-209ENST00000596726 POLR3GLQ9BT43 218 aa29.24■■■□□ 2.27
PNKP-209ENST00000596726 THRAP3Q9Y2W1 955 aaKnown RBP29.24■■■□□ 2.27
PNKP-209ENST00000596726 WDR17Q8IZU2 1322 aa29.23■■■□□ 2.27
PNKP-209ENST00000596726 NSD3Q9BZ95 1437 aa29.23■■■□□ 2.27
PNKP-209ENST00000596726 A0A0G2JS52 829 aa29.23■■■□□ 2.27
PNKP-209ENST00000596726 MYT1Q01538 1121 aa29.23■■■□□ 2.27
PNKP-209ENST00000596726 GGNBP2Q9H3C7 697 aa29.22■■■□□ 2.27
PNKP-209ENST00000596726 TOM1L2Q6ZVM7 507 aa29.19■■■□□ 2.26
PNKP-209ENST00000596726 PARP4Q9UKK3 1724 aaKnown RBP29.17■■■□□ 2.26
PNKP-209ENST00000596726 FBLN1P23142 703 aa29.16■■■□□ 2.26
PNKP-209ENST00000596726 IP6K1Q92551 441 aa29.16■■■□□ 2.26
PNKP-209ENST00000596726 WNK3Q9BYP7 1800 aa29.15■■■□□ 2.26
PNKP-209ENST00000596726 CCDC125Q86Z20 511 aa29.15■■■□□ 2.26
PNKP-209ENST00000596726 CARD10Q9BWT7 1032 aa29.15■■■□□ 2.26
PNKP-209ENST00000596726 ERBB3P21860 1342 aa29.15■■■□□ 2.26
PNKP-209ENST00000596726 MAP3K19Q56UN5 1328 aa29.15■■■□□ 2.26
PNKP-209ENST00000596726 BLMP54132 1417 aaPredicted RBP29.14■■■□□ 2.26
PNKP-209ENST00000596726 CSB-PGBD3P0DP91 1061 aa29.14■■■□□ 2.26
PNKP-209ENST00000596726 PANK3Q9H999 370 aa29.13■■■□□ 2.25
PNKP-209ENST00000596726 KIF7Q2M1P5 1343 aa29.13■■■□□ 2.25
PNKP-209ENST00000596726 CGNL1Q0VF96 1302 aa29.12■■■□□ 2.25
PNKP-209ENST00000596726 ANKRD24Q8TF21 1146 aa29.1■■■□□ 2.25
PNKP-209ENST00000596726 HOXC9P31274 260 aa29.09■■■□□ 2.25
PNKP-209ENST00000596726 FAM182BQ5T319 152 aa29.09■■■□□ 2.25
PNKP-209ENST00000596726 CCDC7Q96M83 1385 aa29.09■■■□□ 2.25
PNKP-209ENST00000596726 ANKRD26Q9UPS8 1709 aa29.08■■■□□ 2.25
PNKP-209ENST00000596726 RRS1Q15050 365 aaKnown RBP29.08■■■□□ 2.25
PNKP-209ENST00000596726 RTL1A6NKG5 1358 aa29.07■■■□□ 2.24
PNKP-209ENST00000596726 DISP2A7MBM2 1401 aa29.07■■■□□ 2.24
PNKP-209ENST00000596726 AMPHP49418 695 aa29.07■■■□□ 2.24
PNKP-209ENST00000596726 FAM208AQ9UK61 1670 aaKnown RBP29.06■■■□□ 2.24
PNKP-209ENST00000596726 LRRC37A3O60309 1634 aa29.06■■■□□ 2.24
PNKP-209ENST00000596726 PDE3BQ13370 1112 aa29.06■■■□□ 2.24
PNKP-209ENST00000596726 CDCA7Q9BWT1 371 aaPredicted RBP29.06■■■□□ 2.24
PNKP-209ENST00000596726 NLRP2Q9NX02 1062 aa29.04■■■□□ 2.24
PNKP-209ENST00000596726 PEAK1Q9H792 1746 aa29.03■■■□□ 2.24
PNKP-209ENST00000596726 KIF24Q5T7B8 1368 aa29.02■■■□□ 2.24
PNKP-209ENST00000596726 MAP2P11137 1827 aaKnown RBP29.02■■■□□ 2.24
PNKP-209ENST00000596726 FAM196AQ6ZSG2 479 aa29.02■■■□□ 2.24
PNKP-209ENST00000596726 RGPD1P0DJD0 1748 aa29.01■■■□□ 2.23
PNKP-209ENST00000596726 DDB1Q16531 1140 aa29.01■■■□□ 2.23
PNKP-209ENST00000596726 RGPD2P0DJD1 1756 aa29.01■■■□□ 2.23
PNKP-209ENST00000596726 LTV1Q96GA3 475 aaPredicted RBP29■■■□□ 2.23
PNKP-209ENST00000596726 NSD2O96028 1365 aa28.99■■■□□ 2.23
PNKP-209ENST00000596726 FLT4P35916 1363 aa28.98■■■□□ 2.23
PNKP-209ENST00000596726 WASHC2AQ641Q2 1341 aa28.97■■■□□ 2.23
PNKP-209ENST00000596726 SF3B2Q13435 895 aaKnown RBP28.97■■■□□ 2.23
PNKP-209ENST00000596726 EMILIN1Q9Y6C2 1016 aa28.97■■■□□ 2.23
PNKP-209ENST00000596726 INSRP06213 1382 aa28.97■■■□□ 2.23
PNKP-209ENST00000596726 TNS1Q9HBL0 1735 aaKnown RBP28.97■■■□□ 2.23
PNKP-209ENST00000596726 HSP90AB2PQ58FF8 381 aa28.96■■■□□ 2.23
PNKP-209ENST00000596726 KNSTRNQ9Y448 316 aa28.95■■■□□ 2.22
PNKP-209ENST00000596726 EXOC5O00471 708 aa28.94■■■□□ 2.22
PNKP-209ENST00000596726 IL2RBP14784 551 aa28.94■■■□□ 2.22
PNKP-209ENST00000596726 DEFB132Q7Z7B7 95 aa28.94■■■□□ 2.22
PNKP-209ENST00000596726 OVOS2A0A0G2JMS6 1433 aa28.94■■■□□ 2.22
PNKP-209ENST00000596726 SBF2Q86WG5 1849 aa28.93■■■□□ 2.22
PNKP-209ENST00000596726 MARCH10Q8NA82 808 aaPredicted RBP28.93■■■□□ 2.22
PNKP-209ENST00000596726 TNS2Q63HR2 1409 aa28.93■■■□□ 2.22
PNKP-209ENST00000596726 PER1O15534 1290 aaPredicted RBP28.92■■■□□ 2.22
PNKP-209ENST00000596726 POLKQ9UBT6 870 aa28.92■■■□□ 2.22
PNKP-209ENST00000596726 TRIM37O94972 964 aa28.91■■■□□ 2.22
PNKP-209ENST00000596726 AMER1Q5JTC6 1135 aaPredicted RBP28.91■■■□□ 2.22
PNKP-209ENST00000596726 BCL9O00512 1426 aa28.9■■■□□ 2.22
PNKP-209ENST00000596726 NBPF6Q5VWK0 638 aa28.9■■■□□ 2.22
PNKP-209ENST00000596726 SMG6Q86US8 1419 aaKnown RBP28.9■■■□□ 2.22
PNKP-209ENST00000596726 NBPF4Q96M43 638 aa28.9■■■□□ 2.22
PNKP-209ENST00000596726 BAG6P46379 1132 aa28.89■■■□□ 2.22
PNKP-209ENST00000596726 TNNT2P45379 298 aaPredicted RBP28.87■■■□□ 2.21
PNKP-209ENST00000596726 PPM1GO15355 546 aaPredicted RBP28.86■■■□□ 2.21
PNKP-209ENST00000596726 MORC1Q86VD1 984 aa28.86■■■□□ 2.21
PNKP-209ENST00000596726 EN1Q05925 392 aaPredicted RBP28.82■■■□□ 2.2
PNKP-209ENST00000596726 MEGF6O75095 1541 aa28.82■■■□□ 2.2
PNKP-209ENST00000596726 USHBP1Q8N6Y0 703 aa28.81■■■□□ 2.2
PNKP-209ENST00000596726 SHANK3Q9BYB0 1731 aa28.8■■■□□ 2.2
PNKP-209ENST00000596726 NCAPD2Q15021 1401 aa28.8■■■□□ 2.2
PNKP-209ENST00000596726 APBA3O96018 575 aa28.8■■■□□ 2.2
PNKP-209ENST00000596726 NPC1L1Q9UHC9 1359 aa28.79■■■□□ 2.2
PNKP-209ENST00000596726 CAMKK2Q96RR4 588 aa28.79■■■□□ 2.2
PNKP-209ENST00000596726 BCL11BQ9C0K0 894 aaPredicted RBP28.77■■■□□ 2.2
PNKP-209ENST00000596726 EZH2Q15910 746 aaKnown RBP28.76■■■□□ 2.19
PNKP-209ENST00000596726 PARD3Q8TEW0 1356 aa28.75■■■□□ 2.19
PNKP-209ENST00000596726 EIF4A2Q14240 407 aaKnown RBP28.75■■■□□ 2.19
PNKP-209ENST00000596726 PTF1AQ7RTS3 328 aa28.75■■■□□ 2.19
PNKP-209ENST00000596726 ZCRB1Q8TBF4 217 aaKnown RBP28.75■■■□□ 2.19
PNKP-209ENST00000596726 RAPGEF4Q8WZA2 1011 aa28.75■■■□□ 2.19
PNKP-209ENST00000596726 EYA1Q99502 592 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms