RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 MEX3CQ5U5Q3 659 aaKnown RBP14.46□□□□□ -0.09
LIG1-210ENST00000596332 ATRNO75882 1429 aa14.46□□□□□ -0.09
LIG1-210ENST00000596332 SMG6Q86US8 1419 aaKnown RBP14.46□□□□□ -0.09
LIG1-210ENST00000596332 PARD3Q8TEW0 1356 aa14.46□□□□□ -0.1
LIG1-210ENST00000596332 HSP90AB2PQ58FF8 381 aa14.45□□□□□ -0.1
LIG1-210ENST00000596332 USP21Q9UK80 565 aa14.45□□□□□ -0.1
LIG1-210ENST00000596332 COL5A2P05997 1499 aaPredicted RBP14.44□□□□□ -0.1
LIG1-210ENST00000596332 NWD2Q9ULI1 1742 aa14.44□□□□□ -0.1
LIG1-210ENST00000596332 ABCC6O95255 1503 aa14.44□□□□□ -0.1
LIG1-210ENST00000596332 LTN1O94822 1766 aa14.44□□□□□ -0.1
LIG1-210ENST00000596332 RGPD5Q99666 1765 aa14.43□□□□□ -0.1
LIG1-210ENST00000596332 VPS72Q15906 364 aa14.43□□□□□ -0.1
LIG1-210ENST00000596332 LARP1Q6PKG0 1096 aaKnown RBP14.43□□□□□ -0.1
LIG1-210ENST00000596332 QTRT2Q9H974 415 aaKnown RBP14.43□□□□□ -0.1
LIG1-210ENST00000596332 KIF24Q5T7B8 1368 aa14.43□□□□□ -0.1
LIG1-210ENST00000596332 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.42□□□□□ -0.1
LIG1-210ENST00000596332 ZBTB7CA1YPR0 619 aa14.42□□□□□ -0.1
LIG1-210ENST00000596332 CNGB1Q14028 1251 aaPredicted RBP14.42□□□□□ -0.1
LIG1-210ENST00000596332 MAP2P11137 1827 aaKnown RBP14.42□□□□□ -0.1
LIG1-210ENST00000596332 INSRP06213 1382 aa14.42□□□□□ -0.1
LIG1-210ENST00000596332 ERBB3P21860 1342 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 SPATA31A5Q5VU36 1347 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 SPATA31A7Q8IWB4 1347 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 ONECUT3O60422 494 aaPredicted RBP14.41□□□□□ -0.1
LIG1-210ENST00000596332 PPP2R1AP30153 589 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 MTHFSP49914 203 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 ZNF772Q68DY9 489 aaPredicted RBP14.41□□□□□ -0.1
LIG1-210ENST00000596332 RTL1A6NKG5 1358 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 GLI3P10071 1580 aa14.41□□□□□ -0.1
LIG1-210ENST00000596332 BLMP54132 1417 aaPredicted RBP14.41□□□□□ -0.1
LIG1-210ENST00000596332 AMPHP49418 695 aa14.4□□□□□ -0.1
LIG1-210ENST00000596332 GJD4Q96KN9 370 aaPredicted RBP14.4□□□□□ -0.1
LIG1-210ENST00000596332 PRKRIP1Q9H875 184 aaPredicted RBP14.4□□□□□ -0.1
LIG1-210ENST00000596332 SPATA31A1Q5TZJ5 1347 aa14.4□□□□□ -0.1
LIG1-210ENST00000596332 WDR17Q8IZU2 1322 aa14.4□□□□□ -0.1
LIG1-210ENST00000596332 FLT4P35916 1363 aa14.39□□□□□ -0.11
LIG1-210ENST00000596332 NBPF6Q5VWK0 638 aa14.39□□□□□ -0.11
LIG1-210ENST00000596332 ANKRD24Q8TF21 1146 aa14.39□□□□□ -0.11
LIG1-210ENST00000596332 NBPF4Q96M43 638 aa14.39□□□□□ -0.11
LIG1-210ENST00000596332 STRN4Q9NRL3 753 aa14.39□□□□□ -0.11
LIG1-210ENST00000596332 TRPC5Q9UL62 973 aaPredicted RBP14.39□□□□□ -0.11
LIG1-210ENST00000596332 COL3A1P02461 1466 aaPredicted RBP14.38□□□□□ -0.11
LIG1-210ENST00000596332 IL13P35225 146 aa14.37□□□□□ -0.11
LIG1-210ENST00000596332 EIF4A2Q14240 407 aaKnown RBP14.37□□□□□ -0.11
LIG1-210ENST00000596332 CRB1P82279 1406 aa14.37□□□□□ -0.11
LIG1-210ENST00000596332 NCAPD2Q15021 1401 aa14.37□□□□□ -0.11
LIG1-210ENST00000596332 CDK12Q9NYV4 1490 aaPredicted RBP14.37□□□□□ -0.11
LIG1-210ENST00000596332 PPM1GO15355 546 aaPredicted RBP14.36□□□□□ -0.11
LIG1-210ENST00000596332 EVA1CP58658 441 aa14.36□□□□□ -0.11
LIG1-210ENST00000596332 RBM6P78332 1123 aaKnown RBP14.36□□□□□ -0.11
LIG1-210ENST00000596332 RALBP1Q15311 655 aa14.36□□□□□ -0.11
LIG1-210ENST00000596332 CARD10Q9BWT7 1032 aa14.36□□□□□ -0.11
LIG1-210ENST00000596332 ILDR2Q71H61 639 aa14.35□□□□□ -0.11
LIG1-210ENST00000596332 LTV1Q96GA3 475 aaPredicted RBP14.35□□□□□ -0.11
LIG1-210ENST00000596332 EYA1Q99502 592 aa14.35□□□□□ -0.11
LIG1-210ENST00000596332 FAM208AQ9UK61 1670 aaKnown RBP14.35□□□□□ -0.11
LIG1-210ENST00000596332 DISP2A7MBM2 1401 aa14.34□□□□□ -0.11
LIG1-210ENST00000596332 CCDC184Q52MB2 194 aa14.34□□□□□ -0.11
LIG1-210ENST00000596332 BARGINQ6ZT62 677 aa14.34□□□□□ -0.11
LIG1-210ENST00000596332 RGPD2P0DJD1 1756 aa14.34□□□□□ -0.11
LIG1-210ENST00000596332 RXRBP28702 533 aa14.33□□□□□ -0.12
LIG1-210ENST00000596332 TOM1L2Q6ZVM7 507 aa14.32□□□□□ -0.12
LIG1-210ENST00000596332 TCP11L2Q8N4U5 519 aa14.32□□□□□ -0.12
LIG1-210ENST00000596332 THSD7AQ9UPZ6 1657 aa14.32□□□□□ -0.12
LIG1-210ENST00000596332 RGPD1P0DJD0 1748 aa14.32□□□□□ -0.12
LIG1-210ENST00000596332 RGS12O14924 1447 aa14.32□□□□□ -0.12
LIG1-210ENST00000596332 FAM98CQ17RN3 349 aaKnown RBP14.31□□□□□ -0.12
LIG1-210ENST00000596332 USHBP1Q8N6Y0 703 aa14.31□□□□□ -0.12
LIG1-210ENST00000596332 NLRP2Q9NX02 1062 aa14.31□□□□□ -0.12
LIG1-210ENST00000596332 USP35Q9P2H5 1018 aa14.31□□□□□ -0.12
LIG1-210ENST00000596332 THRAP3Q9Y2W1 955 aaKnown RBP14.31□□□□□ -0.12
LIG1-210ENST00000596332 IGSF1Q8N6C5 1336 aa14.31□□□□□ -0.12
LIG1-210ENST00000596332 CSB-PGBD3P0DP91 1061 aa14.3□□□□□ -0.12
LIG1-210ENST00000596332 MYBBP1AQ9BQG0 1328 aaKnown RBP14.3□□□□□ -0.12
LIG1-210ENST00000596332 AEBP1Q8IUX7 1158 aa14.29□□□□□ -0.12
LIG1-210ENST00000596332 SEPT12Q8IYM1 358 aa14.29□□□□□ -0.12
LIG1-210ENST00000596332 CCDC9Q9Y3X0 531 aaKnown RBP14.29□□□□□ -0.12
LIG1-210ENST00000596332 DIAPH1O60610 1272 aaKnown RBP14.28□□□□□ -0.12
LIG1-210ENST00000596332 MEGF6O75095 1541 aa14.28□□□□□ -0.12
LIG1-210ENST00000596332 KDRP35968 1356 aa14.28□□□□□ -0.12
LIG1-210ENST00000596332 IL2RBP14784 551 aa14.25□□□□□ -0.13
LIG1-210ENST00000596332 WNK3Q9BYP7 1800 aa14.25□□□□□ -0.13
LIG1-210ENST00000596332 PARP4Q9UKK3 1724 aaKnown RBP14.24□□□□□ -0.13
LIG1-210ENST00000596332 MARCH10Q8NA82 808 aaPredicted RBP14.24□□□□□ -0.13
LIG1-210ENST00000596332 BRWD3Q6RI45 1802 aa14.24□□□□□ -0.13
LIG1-210ENST00000596332 OVOS2A0A0G2JMS6 1433 aa14.24□□□□□ -0.13
LIG1-210ENST00000596332 LRRC37A3O60309 1634 aa14.23□□□□□ -0.13
LIG1-210ENST00000596332 SULT6B1Q6IMI4 303 aa14.23□□□□□ -0.13
LIG1-210ENST00000596332 ANP32CO43423 234 aa14.22□□□□□ -0.13
LIG1-210ENST00000596332 HMOX1P09601 288 aa14.22□□□□□ -0.13
LIG1-210ENST00000596332 FAM182BQ5T319 152 aa14.22□□□□□ -0.13
LIG1-210ENST00000596332 DIEXFQ68CQ4 756 aaKnown RBP14.22□□□□□ -0.13
LIG1-210ENST00000596332 CDCA7Q9BWT1 371 aaPredicted RBP14.22□□□□□ -0.13
LIG1-210ENST00000596332 RSPH6AQ9H0K4 717 aa14.22□□□□□ -0.13
LIG1-210ENST00000596332 SHANK3Q9BYB0 1731 aa14.21□□□□□ -0.13
LIG1-210ENST00000596332 PHACTR3Q96KR7 559 aa14.21□□□□□ -0.13
LIG1-210ENST00000596332 CFAP53Q96M91 514 aa14.21□□□□□ -0.13
LIG1-210ENST00000596332 PLEKHF1Q96S99 279 aa14.21□□□□□ -0.13
LIG1-210ENST00000596332 CYP27B1O15528 508 aa14.2□□□□□ -0.14
LIG1-210ENST00000596332 DDB1Q16531 1140 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms