RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 ZBTB7CA1YPR0 619 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 CCER2I3L3R5 266 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 PPM1GO15355 546 aaPredicted RBP14.6□□□□□ -0.07
USE1-204ENST00000594399 ADAMTS2O95450 1211 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 AMPHP49418 695 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 ARHGEF25Q86VW2 580 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 COL3A1P02461 1466 aaPredicted RBP14.6□□□□□ -0.07
USE1-204ENST00000594399 LMO7Q8WWI1 1683 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 AFF2P51816 1311 aa14.6□□□□□ -0.07
USE1-204ENST00000594399 COL14A1Q05707 1796 aaKnown RBP14.6□□□□□ -0.07
USE1-204ENST00000594399 ZC3H6P61129 1189 aaKnown RBP14.59□□□□□ -0.07
USE1-204ENST00000594399 NGLY1Q96IV0 654 aa14.59□□□□□ -0.07
USE1-204ENST00000594399 CFAP53Q96M91 514 aa14.59□□□□□ -0.07
USE1-204ENST00000594399 PRDM11Q9NQV5 511 aa14.59□□□□□ -0.07
USE1-204ENST00000594399 COL18A1P39060 1754 aa14.59□□□□□ -0.07
USE1-204ENST00000594399 INSRP06213 1382 aa14.59□□□□□ -0.07
USE1-204ENST00000594399 BLMP54132 1417 aaPredicted RBP14.58□□□□□ -0.07
USE1-204ENST00000594399 MRS2Q9HD23 443 aa14.58□□□□□ -0.08
USE1-204ENST00000594399 PLCH1Q4KWH8 1693 aa14.58□□□□□ -0.08
USE1-204ENST00000594399 RXRBP28702 533 aa14.57□□□□□ -0.08
USE1-204ENST00000594399 HOXC9P31274 260 aa14.57□□□□□ -0.08
USE1-204ENST00000594399 IP6K1Q92551 441 aa14.56□□□□□ -0.08
USE1-204ENST00000594399 FAM208AQ9UK61 1670 aaKnown RBP14.55□□□□□ -0.08
USE1-204ENST00000594399 RGPD5Q99666 1765 aa14.55□□□□□ -0.08
USE1-204ENST00000594399 CHRNA2Q15822 529 aa14.55□□□□□ -0.08
USE1-204ENST00000594399 CCDC184Q52MB2 194 aa14.55□□□□□ -0.08
USE1-204ENST00000594399 HSP90AB2PQ58FF8 381 aa14.54□□□□□ -0.08
USE1-204ENST00000594399 QTRT2Q9H974 415 aaKnown RBP14.54□□□□□ -0.08
USE1-204ENST00000594399 NWD2Q9ULI1 1742 aa14.54□□□□□ -0.08
USE1-204ENST00000594399 RGPD1P0DJD0 1748 aa14.53□□□□□ -0.08
USE1-204ENST00000594399 CAMTA1Q9Y6Y1 1673 aa14.53□□□□□ -0.08
USE1-204ENST00000594399 COL5A2P05997 1499 aaPredicted RBP14.53□□□□□ -0.08
USE1-204ENST00000594399 DIAPH1O60610 1272 aaKnown RBP14.53□□□□□ -0.08
USE1-204ENST00000594399 USP21Q9UK80 565 aa14.53□□□□□ -0.08
USE1-204ENST00000594399 NRAPQ86VF7 1730 aa14.52□□□□□ -0.08
USE1-204ENST00000594399 ERBB3P21860 1342 aa14.52□□□□□ -0.08
USE1-204ENST00000594399 FAM83GA6ND36 823 aa14.52□□□□□ -0.09
USE1-204ENST00000594399 RBM6P78332 1123 aaKnown RBP14.52□□□□□ -0.09
USE1-204ENST00000594399 FNBP4Q8N3X1 1017 aaPredicted RBP14.52□□□□□ -0.09
USE1-204ENST00000594399 TRPC5Q9UL62 973 aaPredicted RBP14.52□□□□□ -0.09
USE1-204ENST00000594399 EIF4A2Q14240 407 aaKnown RBP14.51□□□□□ -0.09
USE1-204ENST00000594399 NUDCQ9Y266 331 aa14.51□□□□□ -0.09
USE1-204ENST00000594399 AXIN2Q9Y2T1 843 aa14.51□□□□□ -0.09
USE1-204ENST00000594399 SLIT2O94813 1529 aa14.51□□□□□ -0.09
USE1-204ENST00000594399 IL13P35225 146 aa14.5□□□□□ -0.09
USE1-204ENST00000594399 WDR43Q15061 677 aaKnown RBP eCLIP14.5□□□□□ -0.09
USE1-204ENST00000594399 ANKRD24Q8TF21 1146 aa14.5□□□□□ -0.09
USE1-204ENST00000594399 LTV1Q96GA3 475 aaPredicted RBP14.5□□□□□ -0.09
USE1-204ENST00000594399 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.49□□□□□ -0.09
USE1-204ENST00000594399 RGPD2P0DJD1 1756 aa14.48□□□□□ -0.09
USE1-204ENST00000594399 U2SURPO15042 1029 aaKnown RBP14.48□□□□□ -0.09
USE1-204ENST00000594399 PNISRQ8TF01 805 aaKnown RBP14.48□□□□□ -0.09
USE1-204ENST00000594399 BTG4Q9NY30 223 aa14.48□□□□□ -0.09
USE1-204ENST00000594399 WDR17Q8IZU2 1322 aa14.47□□□□□ -0.09
USE1-204ENST00000594399 IGSF1Q8N6C5 1336 aa14.47□□□□□ -0.09
USE1-204ENST00000594399 CSB-PGBD3P0DP91 1061 aa14.47□□□□□ -0.09
USE1-204ENST00000594399 NCAPD2Q15021 1401 aa14.47□□□□□ -0.09
USE1-204ENST00000594399 U2AF1L5P0DN76 240 aaPredicted RBP14.46□□□□□ -0.09
USE1-204ENST00000594399 U2AF1Q01081 240 aaKnown RBP eCLIP14.46□□□□□ -0.09
USE1-204ENST00000594399 STRN4Q9NRL3 753 aa14.46□□□□□ -0.09
USE1-204ENST00000594399 CRB1P82279 1406 aa14.46□□□□□ -0.09
USE1-204ENST00000594399 BCL9LQ86UU0 1499 aa14.45□□□□□ -0.1
USE1-204ENST00000594399 ATRNO75882 1429 aa14.45□□□□□ -0.1
USE1-204ENST00000594399 EVA1CP58658 441 aa14.45□□□□□ -0.1
USE1-204ENST00000594399 FAM9BQ8IZU0 186 aa14.45□□□□□ -0.1
USE1-204ENST00000594399 EYA1Q99502 592 aa14.45□□□□□ -0.1
USE1-204ENST00000594399 UNC5CLQ8IV45 518 aa14.44□□□□□ -0.1
USE1-204ENST00000594399 KDRP35968 1356 aa14.44□□□□□ -0.1
USE1-204ENST00000594399 NBPF6Q5VWK0 638 aa14.43□□□□□ -0.1
USE1-204ENST00000594399 TOM1L2Q6ZVM7 507 aa14.43□□□□□ -0.1
USE1-204ENST00000594399 NBPF4Q96M43 638 aa14.43□□□□□ -0.1
USE1-204ENST00000594399 NLRP2Q9NX02 1062 aa14.43□□□□□ -0.1
USE1-204ENST00000594399 ADAMTS8Q9UP79 889 aa14.43□□□□□ -0.1
USE1-204ENST00000594399 WNK3Q9BYP7 1800 aa14.43□□□□□ -0.1
USE1-204ENST00000594399 RGS12O14924 1447 aa14.42□□□□□ -0.1
USE1-204ENST00000594399 SULT6B1Q6IMI4 303 aa14.42□□□□□ -0.1
USE1-204ENST00000594399 LARP1Q6PKG0 1096 aaKnown RBP14.42□□□□□ -0.1
USE1-204ENST00000594399 AEBP1Q8IUX7 1158 aa14.42□□□□□ -0.1
USE1-204ENST00000594399 USHBP1Q8N6Y0 703 aa14.42□□□□□ -0.1
USE1-204ENST00000594399 GJD4Q96KN9 370 aaPredicted RBP14.42□□□□□ -0.1
USE1-204ENST00000594399 PARP4Q9UKK3 1724 aaKnown RBP14.41□□□□□ -0.1
USE1-204ENST00000594399 HMOX1P09601 288 aa14.41□□□□□ -0.1
USE1-204ENST00000594399 CARD10Q9BWT7 1032 aa14.41□□□□□ -0.1
USE1-204ENST00000594399 RSPH6AQ9H0K4 717 aa14.41□□□□□ -0.1
USE1-204ENST00000594399 FCHSD2O94868 740 aa14.4□□□□□ -0.1
USE1-204ENST00000594399 PNNQ9H307 717 aaKnown RBP14.4□□□□□ -0.1
USE1-204ENST00000594399 PLEKHG2Q9H7P9 1386 aa14.39□□□□□ -0.11
USE1-204ENST00000594399 PRKAR2BP31323 418 aa14.39□□□□□ -0.11
USE1-204ENST00000594399 VPS72Q15906 364 aa14.39□□□□□ -0.11
USE1-204ENST00000594399 UPF1Q92900 1129 aaKnown RBP eCLIP14.39□□□□□ -0.11
USE1-204ENST00000594399 MEGF6O75095 1541 aa14.39□□□□□ -0.11
USE1-204ENST00000594399 RUNDC1Q96C34 613 aa14.38□□□□□ -0.11
USE1-204ENST00000594399 SPATA31A1Q5TZJ5 1347 aa14.38□□□□□ -0.11
USE1-204ENST00000594399 SPATA31A5Q5VU36 1347 aa14.38□□□□□ -0.11
USE1-204ENST00000594399 SPATA31A7Q8IWB4 1347 aa14.38□□□□□ -0.11
USE1-204ENST00000594399 MAPK8IP3Q9UPT6 1336 aa14.38□□□□□ -0.11
USE1-204ENST00000594399 PKD1L3Q7Z443 1732 aa14.38□□□□□ -0.11
USE1-204ENST00000594399 NEFMP07197 916 aa14.37□□□□□ -0.11
USE1-204ENST00000594399 CCDC146Q8IYE0 955 aa14.37□□□□□ -0.11
USE1-204ENST00000594399 RAPGEF4Q8WZA2 1011 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms