RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CRB1P82279 1406 aa21.36■■□□□ 1.01
TRIM28-203ENST00000593582 AXIN2Q9Y2T1 843 aa21.35■■□□□ 1.01
TRIM28-203ENST00000593582 TOM1L2Q6ZVM7 507 aa21.34■■□□□ 1.01
TRIM28-203ENST00000593582 NFAT5O94916 1531 aa21.34■■□□□ 1.01
TRIM28-203ENST00000593582 FAM182BQ5T319 152 aa21.33■■□□□ 1.01
TRIM28-203ENST00000593582 PDE3BQ13370 1112 aa21.32■■□□□ 1
TRIM28-203ENST00000593582 ANKRD36BQ8N2N9 1353 aa21.32■■□□□ 1
TRIM28-203ENST00000593582 WDR17Q8IZU2 1322 aa21.31■■□□□ 1
TRIM28-203ENST00000593582 COL18A1P39060 1754 aa21.31■■□□□ 1
TRIM28-203ENST00000593582 CSB-PGBD3P0DP91 1061 aa21.31■■□□□ 1
TRIM28-203ENST00000593582 FAM196AQ6ZSG2 479 aa21.3■■□□□ 1
TRIM28-203ENST00000593582 USP54Q70EL1 1684 aa21.3■■□□□ 1
TRIM28-203ENST00000593582 DEFB132Q7Z7B7 95 aa21.29■■□□□ 1
TRIM28-203ENST00000593582 ABCC6O95255 1503 aa21.29■■□□□ 1
TRIM28-203ENST00000593582 OVOS2A0A0J9YW53 1432 aa21.29■■□□□ 1
TRIM28-203ENST00000593582 OVOS2Q6IE36 1432 aa21.29■■□□□ 1
TRIM28-203ENST00000593582 COG3Q96JB2 828 aa21.28■■□□□ 1
TRIM28-203ENST00000593582 BAG6P46379 1132 aa21.27■■□□□ 1
TRIM28-203ENST00000593582 CARD10Q9BWT7 1032 aa21.26■□□□□ 0.99
TRIM28-203ENST00000593582 EIF4G2P78344 907 aaKnown RBP eCLIP21.25■□□□□ 0.99
TRIM28-203ENST00000593582 CDCA7Q9BWT1 371 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-203ENST00000593582 DDB1Q16531 1140 aa21.23■□□□□ 0.99
TRIM28-203ENST00000593582 SRCAPQ6ZRS2 3230 aa21.23■□□□□ 0.99
TRIM28-203ENST00000593582 PARP4Q9UKK3 1724 aaKnown RBP21.22■□□□□ 0.99
TRIM28-203ENST00000593582 TRIM37O94972 964 aa21.22■□□□□ 0.99
TRIM28-203ENST00000593582 ERBB3P21860 1342 aa21.22■□□□□ 0.99
TRIM28-203ENST00000593582 CCDC7Q96M83 1385 aa21.22■□□□□ 0.99
TRIM28-203ENST00000593582 RGPD5Q99666 1765 aa21.21■□□□□ 0.99
TRIM28-203ENST00000593582 C11orf95C9JLR9 678 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-203ENST00000593582 FYB1O15117 783 aa21.21■□□□□ 0.99
TRIM28-203ENST00000593582 RGPD1P0DJD0 1748 aa21.21■□□□□ 0.99
TRIM28-203ENST00000593582 ANKRD24Q8TF21 1146 aa21.2■□□□□ 0.98
TRIM28-203ENST00000593582 GGNBP2Q9H3C7 697 aa21.2■□□□□ 0.98
TRIM28-203ENST00000593582 NLRP2Q9NX02 1062 aa21.2■□□□□ 0.98
TRIM28-203ENST00000593582 LTN1O94822 1766 aa21.2■□□□□ 0.98
TRIM28-203ENST00000593582 HSPA5P11021 654 aaKnown RBP21.19■□□□□ 0.98
TRIM28-203ENST00000593582 EN1Q05925 392 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-203ENST00000593582 IP6K1Q92551 441 aa21.19■□□□□ 0.98
TRIM28-203ENST00000593582 POLR3GLQ9BT43 218 aa21.18■□□□□ 0.98
TRIM28-203ENST00000593582 AMPHP49418 695 aa21.17■□□□□ 0.98
TRIM28-203ENST00000593582 MAP3K19Q56UN5 1328 aa21.17■□□□□ 0.98
TRIM28-203ENST00000593582 OVOS2A0A0G2JMS6 1433 aa21.17■□□□□ 0.98
TRIM28-203ENST00000593582 DISP2A7MBM2 1401 aa21.17■□□□□ 0.98
TRIM28-203ENST00000593582 LRRC37A3O60309 1634 aa21.16■□□□□ 0.98
TRIM28-203ENST00000593582 APBA3O96018 575 aa21.16■□□□□ 0.98
TRIM28-203ENST00000593582 CARD14Q9BXL6 1004 aa21.16■□□□□ 0.98
TRIM28-203ENST00000593582 NSD3Q9BZ95 1437 aa21.15■□□□□ 0.98
TRIM28-203ENST00000593582 EXOC5O00471 708 aa21.15■□□□□ 0.98
TRIM28-203ENST00000593582 FBLN1P23142 703 aa21.15■□□□□ 0.98
TRIM28-203ENST00000593582 MYOM1P52179 1685 aa21.15■□□□□ 0.98
TRIM28-203ENST00000593582 TNS1Q9HBL0 1735 aaKnown RBP21.14■□□□□ 0.97
TRIM28-203ENST00000593582 HOXC9P31274 260 aa21.13■□□□□ 0.97
TRIM28-203ENST00000593582 LTV1Q96GA3 475 aaPredicted RBP21.13■□□□□ 0.97
TRIM28-203ENST00000593582 IL2RBP14784 551 aa21.12■□□□□ 0.97
TRIM28-203ENST00000593582 RRS1Q15050 365 aaKnown RBP21.12■□□□□ 0.97
TRIM28-203ENST00000593582 EZH2Q15910 746 aaKnown RBP21.12■□□□□ 0.97
TRIM28-203ENST00000593582 MARCH10Q8NA82 808 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-203ENST00000593582 WNK3Q9BYP7 1800 aa21.12■□□□□ 0.97
TRIM28-203ENST00000593582 RTL1A6NKG5 1358 aa21.11■□□□□ 0.97
TRIM28-203ENST00000593582 PARD3Q8TEW0 1356 aa21.11■□□□□ 0.97
TRIM28-203ENST00000593582 CAMKK2Q96RR4 588 aa21.11■□□□□ 0.97
TRIM28-203ENST00000593582 CGNL1Q0VF96 1302 aa21.1■□□□□ 0.97
TRIM28-203ENST00000593582 TNS2Q63HR2 1409 aa21.1■□□□□ 0.97
TRIM28-203ENST00000593582 PEAK1Q9H792 1746 aa21.09■□□□□ 0.97
TRIM28-203ENST00000593582 KIF20BQ96Q89 1820 aa21.08■□□□□ 0.97
TRIM28-203ENST00000593582 BCL9O00512 1426 aa21.08■□□□□ 0.97
TRIM28-203ENST00000593582 BCL11BQ9C0K0 894 aaPredicted RBP21.07■□□□□ 0.96
TRIM28-203ENST00000593582 FAM208AQ9UK61 1670 aaKnown RBP21.05■□□□□ 0.96
TRIM28-203ENST00000593582 SMG6Q86US8 1419 aaKnown RBP21.05■□□□□ 0.96
TRIM28-203ENST00000593582 KIF24Q5T7B8 1368 aa21.05■□□□□ 0.96
TRIM28-203ENST00000593582 PSDA5PKW4 1024 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-203ENST00000593582 PANK3Q9H999 370 aa21.04■□□□□ 0.96
TRIM28-203ENST00000593582 FLT4P35916 1363 aa21.04■□□□□ 0.96
TRIM28-203ENST00000593582 HSP90AB2PQ58FF8 381 aa21.03■□□□□ 0.96
TRIM28-203ENST00000593582 INSRP06213 1382 aa21.02■□□□□ 0.96
TRIM28-203ENST00000593582 PLSCR1O15162 318 aa21.02■□□□□ 0.96
TRIM28-203ENST00000593582 R3HDM1Q15032 1099 aaKnown RBP21.01■□□□□ 0.95
TRIM28-203ENST00000593582 PTF1AQ7RTS3 328 aa21.01■□□□□ 0.95
TRIM28-203ENST00000593582 SBF2Q86WG5 1849 aa21■□□□□ 0.95
TRIM28-203ENST00000593582 PPM1GO15355 546 aaPredicted RBP21■□□□□ 0.95
TRIM28-203ENST00000593582 NBPF6Q5VWK0 638 aa21■□□□□ 0.95
TRIM28-203ENST00000593582 NBPF4Q96M43 638 aa21■□□□□ 0.95
TRIM28-203ENST00000593582 EMILIN1Q9Y6C2 1016 aa21■□□□□ 0.95
TRIM28-203ENST00000593582 NBPF14Q5TI25 921 aa20.99■□□□□ 0.95
TRIM28-203ENST00000593582 DDX54Q8TDD1 881 aaKnown RBP20.99■□□□□ 0.95
TRIM28-203ENST00000593582 USHBP1Q8N6Y0 703 aa20.97■□□□□ 0.95
TRIM28-203ENST00000593582 ACSBG1Q96GR2 724 aa20.97■□□□□ 0.95
TRIM28-203ENST00000593582 RREB1Q92766 1687 aa20.96■□□□□ 0.95
TRIM28-203ENST00000593582 KCNQ2O43526 872 aa20.96■□□□□ 0.95
TRIM28-203ENST00000593582 TNNT2P45379 298 aaPredicted RBP20.96■□□□□ 0.95
TRIM28-203ENST00000593582 ZCRB1Q8TBF4 217 aaKnown RBP20.96■□□□□ 0.95
TRIM28-203ENST00000593582 RAPGEF4Q8WZA2 1011 aa20.96■□□□□ 0.95
TRIM28-203ENST00000593582 KNSTRNQ9Y448 316 aa20.95■□□□□ 0.94
TRIM28-203ENST00000593582 KIF7Q2M1P5 1343 aa20.95■□□□□ 0.94
TRIM28-203ENST00000593582 WASHC2AQ641Q2 1341 aa20.95■□□□□ 0.94
TRIM28-203ENST00000593582 NSD2O96028 1365 aa20.95■□□□□ 0.94
TRIM28-203ENST00000593582 MEGF6O75095 1541 aa20.94■□□□□ 0.94
TRIM28-203ENST00000593582 POLKQ9UBT6 870 aa20.94■□□□□ 0.94
TRIM28-203ENST00000593582 RGPD3A6NKT7 1758 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-203ENST00000593582 RGPD4Q7Z3J3 1758 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms