RNA–Protein interactions for RNA: ENST00000592619.5

VMP1-215, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 838 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-215ENST00000592619 NOVA2Q9UNW9 492 aaKnown RBP11□□□□□ -0.65
VMP1-215ENST00000592619 NCOA4Q13772 614 aa10.99□□□□□ -0.65
VMP1-215ENST00000592619 B4GALNT3Q6L9W6 998 aa10.99□□□□□ -0.65
VMP1-215ENST00000592619 NPM2Q86SE8 214 aaKnown RBP10.99□□□□□ -0.65
VMP1-215ENST00000592619 PTPN5P54829 565 aa10.98□□□□□ -0.65
VMP1-215ENST00000592619 IFFO2Q5TF58 517 aa10.98□□□□□ -0.65
VMP1-215ENST00000592619 TMEM164Q5U3C3 297 aa10.98□□□□□ -0.65
VMP1-215ENST00000592619 TRAF7Q6Q0C0 670 aa10.98□□□□□ -0.65
VMP1-215ENST00000592619 BPHLQ86WA6 291 aaPredicted RBP10.98□□□□□ -0.65
VMP1-215ENST00000592619 DZIP3Q86Y13 1208 aaKnown RBP10.98□□□□□ -0.65
VMP1-215ENST00000592619 USP17L15C9J2P7 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L10C9JJH3 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L13C9JLJ4 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L12C9JPN9 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L11C9JVI0 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L21D6R901 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L18D6R9N7 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L22D6RA61 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L17D6RBQ6 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L19D6RCP7 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L20D6RJB6 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 USP17L24Q0WX57 530 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 PTK7Q13308 1070 aa10.97□□□□□ -0.65
VMP1-215ENST00000592619 LARP1Q6PKG0 1096 aaKnown RBP10.97□□□□□ -0.65
VMP1-215ENST00000592619 CRTC2Q53ET0 693 aaPredicted RBP10.96□□□□□ -0.65
VMP1-215ENST00000592619 STK32AQ8WU08 396 aa10.96□□□□□ -0.65
VMP1-215ENST00000592619 BAP1Q92560 729 aa10.96□□□□□ -0.65
VMP1-215ENST00000592619 RASA1P20936 1047 aa10.95□□□□□ -0.66
VMP1-215ENST00000592619 RANGAP1P46060 587 aaPredicted RBP10.95□□□□□ -0.66
VMP1-215ENST00000592619 EML3Q32P44 896 aa10.95□□□□□ -0.66
VMP1-215ENST00000592619 ZNF511Q8NB15 262 aa10.95□□□□□ -0.66
VMP1-215ENST00000592619 CDCA7Q9BWT1 371 aaPredicted RBP10.95□□□□□ -0.66
VMP1-215ENST00000592619 GNEQ9Y223 722 aaKnown RBP10.95□□□□□ -0.66
VMP1-215ENST00000592619 MFAP1P55081 439 aaKnown RBP10.94□□□□□ -0.66
VMP1-215ENST00000592619 ERFEQ4G0M1 354 aa10.94□□□□□ -0.66
VMP1-215ENST00000592619 A0A0G2JS52 829 aa10.93□□□□□ -0.66
VMP1-215ENST00000592619 MAGEB6P1A0A0J9YX57 407 aa10.93□□□□□ -0.66
VMP1-215ENST00000592619 S1PR4O95977 384 aa10.93□□□□□ -0.66
VMP1-215ENST00000592619 TRIM50Q86XT4 487 aa10.93□□□□□ -0.66
VMP1-215ENST00000592619 RGS22Q8NE09 1264 aa10.93□□□□□ -0.66
VMP1-215ENST00000592619 FCF1Q9Y324 198 aaKnown RBP10.93□□□□□ -0.66
VMP1-215ENST00000592619 IVNS1ABPQ9Y6Y0 642 aa10.93□□□□□ -0.66
VMP1-215ENST00000592619 TSGA10IPQ3SY00 556 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 RNF20Q5VTR2 975 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 CCDC125Q86Z20 511 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 ANKMY2Q8IV38 441 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 NKX2-3Q8TAU0 364 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 FAM200AQ8TCP9 573 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 FOXJ1Q92949 421 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 C1QTNF2Q9BXJ5 285 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 CARD14Q9BXL6 1004 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 NOD1Q9Y239 953 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 NISCHQ9Y2I1 1504 aa10.92□□□□□ -0.66
VMP1-215ENST00000592619 ATP1A2P50993 1020 aa10.91□□□□□ -0.66
VMP1-215ENST00000592619 FAM69CQ0P6D2 419 aa10.91□□□□□ -0.66
VMP1-215ENST00000592619 AGERQ15109 404 aa10.91□□□□□ -0.66
VMP1-215ENST00000592619 C4orf48Q5BLP8 95 aa10.91□□□□□ -0.66
VMP1-215ENST00000592619 OGFOD1Q8N543 542 aa10.91□□□□□ -0.66
VMP1-215ENST00000592619 CCDC85AQ96PX6 553 aaPredicted RBP10.91□□□□□ -0.66
VMP1-215ENST00000592619 DOLKQ9UPQ8 538 aa10.91□□□□□ -0.66
VMP1-215ENST00000592619 GIGYF1O75420 1035 aaPredicted RBP10.9□□□□□ -0.66
VMP1-215ENST00000592619 TRMT44Q8IYL2 757 aaKnown RBP10.9□□□□□ -0.66
VMP1-215ENST00000592619 LARGE2Q8N3Y3 721 aa10.9□□□□□ -0.66
VMP1-215ENST00000592619 CLP1Q92989 425 aaKnown RBP10.9□□□□□ -0.66
VMP1-215ENST00000592619 SSFA2P28290 1259 aa10.89□□□□□ -0.67
VMP1-215ENST00000592619 CLDN10P78369 228 aa10.89□□□□□ -0.67
VMP1-215ENST00000592619 LINC01559Q495D7 138 aa10.89□□□□□ -0.67
VMP1-215ENST00000592619 PHLDB3Q6NSJ2 640 aa10.89□□□□□ -0.67
VMP1-215ENST00000592619 SLC10A4Q96EP9 437 aa10.89□□□□□ -0.67
VMP1-215ENST00000592619 DNAAF2Q9NVR5 837 aaKnown RBP10.89□□□□□ -0.67
VMP1-215ENST00000592619 CDV3Q9UKY7 258 aaKnown RBP10.89□□□□□ -0.67
VMP1-215ENST00000592619 ESPNB1AK53 854 aa10.88□□□□□ -0.67
VMP1-215ENST00000592619 SWI5Q1ZZU3 235 aa10.88□□□□□ -0.67
VMP1-215ENST00000592619 NBPF20Q3BBV1 942 aa10.88□□□□□ -0.67
VMP1-215ENST00000592619 SEPT12Q8IYM1 358 aa10.88□□□□□ -0.67
VMP1-215ENST00000592619 SH3BP2P78314 561 aa10.87□□□□□ -0.67
VMP1-215ENST00000592619 DPYDQ12882 1025 aa10.87□□□□□ -0.67
VMP1-215ENST00000592619 SND1Q7KZF4 910 aaKnown RBP eCLIP10.87□□□□□ -0.674e-7■■■□□ 17.7
VMP1-215ENST00000592619 TXNDC2Q86VQ3 553 aa10.87□□□□□ -0.67
VMP1-215ENST00000592619 SIX5Q8N196 739 aa10.87□□□□□ -0.67
VMP1-215ENST00000592619 ZBTB7BO15156 539 aaPredicted RBP10.86□□□□□ -0.67
VMP1-215ENST00000592619 DKK1O94907 266 aa10.86□□□□□ -0.67
VMP1-215ENST00000592619 CCER1Q8TC90 406 aaPredicted RBP10.86□□□□□ -0.67
VMP1-215ENST00000592619 SLAIN2Q9P270 581 aa10.86□□□□□ -0.67
VMP1-215ENST00000592619 SIRT1Q96EB6 747 aa10.85□□□□□ -0.67
VMP1-215ENST00000592619 MTMR7Q9Y216 660 aa10.85□□□□□ -0.67
VMP1-215ENST00000592619 ARID4AP29374 1257 aaPredicted RBP10.84□□□□□ -0.67
VMP1-215ENST00000592619 USP4Q13107 963 aa10.84□□□□□ -0.67
VMP1-215ENST00000592619 OXLD1Q5BKU9 147 aa10.84□□□□□ -0.67
VMP1-215ENST00000592619 ITGBL1O95965 494 aaPredicted RBP10.83□□□□□ -0.68
VMP1-215ENST00000592619 GTF2IP78347 998 aa10.83□□□□□ -0.68
VMP1-215ENST00000592619 KCNC4Q03721 635 aa10.83□□□□□ -0.68
VMP1-215ENST00000592619 ZNF594Q96JF6 807 aaPredicted RBP10.83□□□□□ -0.68
VMP1-215ENST00000592619 ZBTB24O43167 697 aaPredicted RBP10.82□□□□□ -0.68
VMP1-215ENST00000592619 CCDC27Q2M243 656 aa10.82□□□□□ -0.68
VMP1-215ENST00000592619 KIAA1024Q9UPX6 916 aa10.82□□□□□ -0.68
VMP1-215ENST00000592619 PCDHGA11Q9Y5H2 935 aa10.82□□□□□ -0.68
VMP1-215ENST00000592619 ATP2B4P23634 1241 aa10.81□□□□□ -0.68
VMP1-215ENST00000592619 SEC13P55735 322 aa10.81□□□□□ -0.68
VMP1-215ENST00000592619 WNT7BP56706 349 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms