RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 CEP350Q5VT06 3117 aa16.23■□□□□ 0.19
ZNF540-209ENST00000590588 TOM1L2Q6ZVM7 507 aa16.23■□□□□ 0.19
ZNF540-209ENST00000590588 MARCH10Q8NA82 808 aaPredicted RBP16.23■□□□□ 0.19
ZNF540-209ENST00000590588 CDCA7Q9BWT1 371 aaPredicted RBP16.23■□□□□ 0.19
ZNF540-209ENST00000590588 BCL9O00512 1426 aa16.22■□□□□ 0.19
ZNF540-209ENST00000590588 MAP3K5Q99683 1374 aa16.22■□□□□ 0.19
ZNF540-209ENST00000590588 SBF2Q86WG5 1849 aa16.22■□□□□ 0.19
ZNF540-209ENST00000590588 ITSN1Q15811 1721 aa16.21■□□□□ 0.19
ZNF540-209ENST00000590588 ZBTB7CA1YPR0 619 aa16.2■□□□□ 0.18
ZNF540-209ENST00000590588 KDM2AQ9Y2K7 1162 aa16.2■□□□□ 0.18
ZNF540-209ENST00000590588 STAC3Q96MF2 364 aa16.19■□□□□ 0.18
ZNF540-209ENST00000590588 AATKQ6ZMQ8 1374 aa16.18■□□□□ 0.18
ZNF540-209ENST00000590588 EXOC5O00471 708 aa16.18■□□□□ 0.18
ZNF540-209ENST00000590588 DCAF11Q8TEB1 546 aa16.17■□□□□ 0.18
ZNF540-209ENST00000590588 GOLGB1Q14789 3259 aaKnown RBP16.17■□□□□ 0.18
ZNF540-209ENST00000590588 LRRC37A3O60309 1634 aa16.16■□□□□ 0.18
ZNF540-209ENST00000590588 WDR17Q8IZU2 1322 aa16.16■□□□□ 0.18
ZNF540-209ENST00000590588 NLRP6P59044 892 aa16.15■□□□□ 0.18
ZNF540-209ENST00000590588 PELP1Q8IZL8 1130 aaKnown RBP16.14■□□□□ 0.17
ZNF540-209ENST00000590588 BRD4O60885 1362 aaPredicted RBP16.13■□□□□ 0.17
ZNF540-209ENST00000590588 SLC16A10Q8TF71 515 aa16.13■□□□□ 0.17
ZNF540-209ENST00000590588 CARD10Q9BWT7 1032 aa16.13■□□□□ 0.17
ZNF540-209ENST00000590588 AXIN2Q9Y2T1 843 aa16.13■□□□□ 0.17
ZNF540-209ENST00000590588 POLD1P28340 1107 aa16.12■□□□□ 0.17
ZNF540-209ENST00000590588 KLHL34Q8N239 644 aa16.12■□□□□ 0.17
ZNF540-209ENST00000590588 GRIN3BO60391 1043 aa16.11■□□□□ 0.17
ZNF540-209ENST00000590588 CSB-PGBD3P0DP91 1061 aa16.11■□□□□ 0.17
ZNF540-209ENST00000590588 TOPAZ1Q8N9V7 1692 aa16.09■□□□□ 0.17
ZNF540-209ENST00000590588 SRPK2P78362 688 aaKnown RBP16.09■□□□□ 0.17
ZNF540-209ENST00000590588 AKAP12Q02952 1782 aa16.08■□□□□ 0.17
ZNF540-209ENST00000590588 ZNF827Q17R98 1081 aa16.08■□□□□ 0.16
ZNF540-209ENST00000590588 ACSBG1Q96GR2 724 aa16.08■□□□□ 0.16
ZNF540-209ENST00000590588 PPIP5K1Q6PFW1 1433 aa16.08■□□□□ 0.16
ZNF540-209ENST00000590588 ARHGEF28Q8N1W1 1705 aaKnown RBP16.08■□□□□ 0.16
ZNF540-209ENST00000590588 ARHGEF25Q86VW2 580 aa16.07■□□□□ 0.16
ZNF540-209ENST00000590588 SHANK3Q9BYB0 1731 aa16.06■□□□□ 0.16
ZNF540-209ENST00000590588 HSPA6P17066 643 aa16.06■□□□□ 0.16
ZNF540-209ENST00000590588 KCNH5Q8NCM2 988 aa16.06■□□□□ 0.16
ZNF540-209ENST00000590588 SLIT3O75094 1523 aa16.05■□□□□ 0.16
ZNF540-209ENST00000590588 CCDC7Q96M83 1385 aa16.05■□□□□ 0.16
ZNF540-209ENST00000590588 NLGN2Q8NFZ4 835 aa16.05■□□□□ 0.16
ZNF540-209ENST00000590588 CABP2Q9NPB3 220 aa16.05■□□□□ 0.16
ZNF540-209ENST00000590588 LRRC4BQ9NT99 713 aa16.05■□□□□ 0.16
ZNF540-209ENST00000590588 CABP1Q9NZU7 370 aa16.05■□□□□ 0.16
ZNF540-209ENST00000590588 AKT1S1Q96B36 256 aa16.04■□□□□ 0.16
ZNF540-209ENST00000590588 GPBP1L1Q9HC44 474 aaPredicted RBP16.04■□□□□ 0.16
ZNF540-209ENST00000590588 COL18A1P39060 1754 aa16.04■□□□□ 0.16
ZNF540-209ENST00000590588 USP6P35125 1406 aa16.03■□□□□ 0.16
ZNF540-209ENST00000590588 SLC27A3Q5K4L6 730 aa16.03■□□□□ 0.16
ZNF540-209ENST00000590588 WNK3Q9BYP7 1800 aa16.03■□□□□ 0.16
ZNF540-209ENST00000590588 CPSF1Q10570 1443 aaKnown RBP16.02■□□□□ 0.16
ZNF540-209ENST00000590588 TNS2Q63HR2 1409 aa16.02■□□□□ 0.16
ZNF540-209ENST00000590588 PAPPAQ13219 1627 aa16.02■□□□□ 0.16
ZNF540-209ENST00000590588 YBX3P16989 372 aaKnown RBP eCLIP16.02■□□□□ 0.16
ZNF540-209ENST00000590588 TFCP2L1Q9NZI6 479 aa16.01■□□□□ 0.15
ZNF540-209ENST00000590588 NHSQ6T4R5 1651 aa16.01■□□□□ 0.15
ZNF540-209ENST00000590588 ATP10DQ9P241 1426 aa16.01■□□□□ 0.15
ZNF540-209ENST00000590588 PNPLA7Q6ZV29 1317 aa16■□□□□ 0.15
ZNF540-209ENST00000590588 SOX12O15370 315 aa16■□□□□ 0.15
ZNF540-209ENST00000590588 ZNF692Q9BU19 519 aaPredicted RBP16■□□□□ 0.15
ZNF540-209ENST00000590588 IL2RBP14784 551 aa15.98■□□□□ 0.15
ZNF540-209ENST00000590588 CENPJQ9HC77 1338 aaPredicted RBP15.97■□□□□ 0.15
ZNF540-209ENST00000590588 TTC21BQ7Z4L5 1316 aa15.96■□□□□ 0.15
ZNF540-209ENST00000590588 NLRP2Q9NX02 1062 aa15.96■□□□□ 0.15
ZNF540-209ENST00000590588 TRPM1Q7Z4N2 1603 aa15.96■□□□□ 0.15
ZNF540-209ENST00000590588 COL24A1Q17RW2 1714 aa15.95■□□□□ 0.14
ZNF540-209ENST00000590588 NBPF1Q3BBV0 1214 aa15.95■□□□□ 0.14
ZNF540-209ENST00000590588 ZNF526Q8TF50 670 aaPredicted RBP15.95■□□□□ 0.14
ZNF540-209ENST00000590588 RGPD5Q99666 1765 aa15.95■□□□□ 0.14
ZNF540-209ENST00000590588 ABCC6O95255 1503 aa15.94■□□□□ 0.14
ZNF540-209ENST00000590588 PIK3C2AO00443 1686 aa15.94■□□□□ 0.14
ZNF540-209ENST00000590588 BTAF1O14981 1849 aa15.94■□□□□ 0.14
ZNF540-209ENST00000590588 TTC21AQ8NDW8 1320 aa15.94■□□□□ 0.14
ZNF540-209ENST00000590588 MSH5O43196 834 aa15.93■□□□□ 0.14
ZNF540-209ENST00000590588 QSER1Q2KHR3 1735 aa15.93■□□□□ 0.14
ZNF540-209ENST00000590588 KAT6BQ8WYB5 2073 aa15.93■□□□□ 0.14
ZNF540-209ENST00000590588 KCNQ4P56696 695 aa15.92■□□□□ 0.14
ZNF540-209ENST00000590588 CD2APQ9Y5K6 639 aa15.92■□□□□ 0.14
ZNF540-209ENST00000590588 ERBB3P21860 1342 aa15.92■□□□□ 0.14
ZNF540-209ENST00000590588 APLP1P51693 650 aa15.91■□□□□ 0.14
ZNF540-209ENST00000590588 ADCY9O60503 1353 aa15.9■□□□□ 0.14
ZNF540-209ENST00000590588 RAB3GAP2Q9H2M9 1393 aa15.9■□□□□ 0.14
ZNF540-209ENST00000590588 COL23A1Q86Y22 540 aaPredicted RBP15.9■□□□□ 0.14
ZNF540-209ENST00000590588 DDX54Q8TDD1 881 aaKnown RBP15.9■□□□□ 0.14
ZNF540-209ENST00000590588 SYTL4Q96C24 671 aaPredicted RBP15.9■□□□□ 0.14
ZNF540-209ENST00000590588 EVC2Q86UK5 1308 aa15.9■□□□□ 0.14
ZNF540-209ENST00000590588 KIAA1210Q9ULL0 1709 aa15.88■□□□□ 0.13
ZNF540-209ENST00000590588 KIF3CO14782 793 aa15.88■□□□□ 0.13
ZNF540-209ENST00000590588 PRIM1P49642 420 aaKnown RBP15.88■□□□□ 0.13
ZNF540-209ENST00000590588 ANKRD24Q8TF21 1146 aa15.88■□□□□ 0.13
ZNF540-209ENST00000590588 NFAT5O94916 1531 aa15.88■□□□□ 0.13
ZNF540-209ENST00000590588 QRICH2Q9H0J4 1663 aa15.87■□□□□ 0.13
ZNF540-209ENST00000590588 DNAJC5GQ8N7S2 189 aa15.87■□□□□ 0.13
ZNF540-209ENST00000590588 CCNL1Q9UK58 526 aaPredicted RBP15.87■□□□□ 0.13
ZNF540-209ENST00000590588 HMGB2P26583 209 aaKnown RBP15.86■□□□□ 0.13
ZNF540-209ENST00000590588 MSL1Q68DK7 614 aa15.86■□□□□ 0.13
ZNF540-209ENST00000590588 ANKRD36BQ8N2N9 1353 aa15.85■□□□□ 0.13
ZNF540-209ENST00000590588 FLAD1Q8NFF5 587 aa15.84■□□□□ 0.13
ZNF540-209ENST00000590588 KTN1Q86UP2 1357 aaKnown RBP15.84■□□□□ 0.13
ZNF540-209ENST00000590588 TOMM70O94826 608 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms