RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 NLRP6P59044 892 aa25.21■■□□□ 1.63
RETREG3-210ENST00000590541 TOM1L2Q6ZVM7 507 aa25.21■■□□□ 1.63
RETREG3-210ENST00000590541 MARCH10Q8NA82 808 aaPredicted RBP25.2■■□□□ 1.62
RETREG3-210ENST00000590541 AXIN2Q9Y2T1 843 aa25.2■■□□□ 1.62
RETREG3-210ENST00000590541 BCL9O00512 1426 aa25.2■■□□□ 1.62
RETREG3-210ENST00000590541 WNK3Q9BYP7 1800 aa25.19■■□□□ 1.62
RETREG3-210ENST00000590541 ZBTB7AO95365 584 aa25.19■■□□□ 1.62
RETREG3-210ENST00000590541 PTGER2P43116 358 aa25.19■■□□□ 1.62
RETREG3-210ENST00000590541 CENPJQ9HC77 1338 aaPredicted RBP25.18■■□□□ 1.62
RETREG3-210ENST00000590541 MYOM1P52179 1685 aa25.18■■□□□ 1.62
RETREG3-210ENST00000590541 CABP1Q9NZU7 370 aa25.18■■□□□ 1.62
RETREG3-210ENST00000590541 WDR17Q8IZU2 1322 aa25.17■■□□□ 1.62
RETREG3-210ENST00000590541 PIK3C2AO00443 1686 aa25.16■■□□□ 1.62
RETREG3-210ENST00000590541 ATF5Q9Y2D1 282 aaPredicted RBP25.15■■□□□ 1.62
RETREG3-210ENST00000590541 AKAP12Q02952 1782 aa25.14■■□□□ 1.62
RETREG3-210ENST00000590541 CDCA7Q9BWT1 371 aaPredicted RBP25.14■■□□□ 1.62
RETREG3-210ENST00000590541 CPSF1Q10570 1443 aaKnown RBP25.13■■□□□ 1.61
RETREG3-210ENST00000590541 TXNRD1Q16881 649 aa25.13■■□□□ 1.61
RETREG3-210ENST00000590541 ZNF784Q8NCA9 323 aaPredicted RBP25.13■■□□□ 1.61
RETREG3-210ENST00000590541 QRICH2Q9H0J4 1663 aa25.12■■□□□ 1.61
RETREG3-210ENST00000590541 SLC15A2Q16348 729 aa25.11■■□□□ 1.61
RETREG3-210ENST00000590541 ARHGEF25Q86VW2 580 aa25.11■■□□□ 1.61
RETREG3-210ENST00000590541 STK32BQ9NY57 414 aa25.11■■□□□ 1.61
RETREG3-210ENST00000590541 SYT17Q9BSW7 474 aa25.1■■□□□ 1.61
RETREG3-210ENST00000590541 CARD10Q9BWT7 1032 aa25.1■■□□□ 1.61
RETREG3-210ENST00000590541 FHDC1Q9C0D6 1143 aaPredicted RBP25.1■■□□□ 1.61
RETREG3-210ENST00000590541 RGPD5Q99666 1765 aa25.08■■□□□ 1.61
RETREG3-210ENST00000590541 SGIP1Q9BQI5 828 aa25.08■■□□□ 1.61
RETREG3-210ENST00000590541 UTRNP46939 3433 aa25.08■■□□□ 1.61
RETREG3-210ENST00000590541 EXOC5O00471 708 aa25.06■■□□□ 1.6
RETREG3-210ENST00000590541 MTFR1LQ9H019 292 aa25.06■■□□□ 1.6
RETREG3-210ENST00000590541 CSB-PGBD3P0DP91 1061 aa25.05■■□□□ 1.6
RETREG3-210ENST00000590541 KCNH5Q8NCM2 988 aa25.05■■□□□ 1.6
RETREG3-210ENST00000590541 TTC21BQ7Z4L5 1316 aa25.05■■□□□ 1.6
RETREG3-210ENST00000590541 SOX12O15370 315 aa25.03■■□□□ 1.6
RETREG3-210ENST00000590541 TRPM1Q7Z4N2 1603 aa25.03■■□□□ 1.6
RETREG3-210ENST00000590541 CCDC7Q96M83 1385 aa25.02■■□□□ 1.6
RETREG3-210ENST00000590541 TNS2Q63HR2 1409 aa25.02■■□□□ 1.6
RETREG3-210ENST00000590541 NFAT5O94916 1531 aa25.02■■□□□ 1.6
RETREG3-210ENST00000590541 ZNF692Q9BU19 519 aaPredicted RBP25.01■■□□□ 1.59
RETREG3-210ENST00000590541 EVC2Q86UK5 1308 aa25.01■■□□□ 1.59
RETREG3-210ENST00000590541 NHSQ6T4R5 1651 aa25.01■■□□□ 1.59
RETREG3-210ENST00000590541 PAPPAQ13219 1627 aa24.99■■□□□ 1.59
RETREG3-210ENST00000590541 TTC21AQ8NDW8 1320 aa24.98■■□□□ 1.59
RETREG3-210ENST00000590541 ACSBG1Q96GR2 724 aa24.98■■□□□ 1.59
RETREG3-210ENST00000590541 CHD4Q14839 1912 aa24.97■■□□□ 1.59
RETREG3-210ENST00000590541 ARXQ96QS3 562 aa24.97■■□□□ 1.59
RETREG3-210ENST00000590541 ABCC6O95255 1503 aa24.96■■□□□ 1.59
RETREG3-210ENST00000590541 MAP3K5Q99683 1374 aa24.95■■□□□ 1.59
RETREG3-210ENST00000590541 SENP3-EIF4A1A0A087X0R7 540 aa24.94■■□□□ 1.58
RETREG3-210ENST00000590541 C1QTNF8P60827 252 aa24.94■■□□□ 1.58
RETREG3-210ENST00000590541 ZNF827Q17R98 1081 aa24.93■■□□□ 1.58
RETREG3-210ENST00000590541 ERBB3P21860 1342 aa24.91■■□□□ 1.58
RETREG3-210ENST00000590541 KTN1Q86UP2 1357 aaKnown RBP24.91■■□□□ 1.58
RETREG3-210ENST00000590541 L3MBTL2Q969R5 705 aa24.9■■□□□ 1.58
RETREG3-210ENST00000590541 LRRC4BQ9NT99 713 aa24.9■■□□□ 1.58
RETREG3-210ENST00000590541 BTAF1O14981 1849 aa24.9■■□□□ 1.58
RETREG3-210ENST00000590541 NLRP2Q9NX02 1062 aa24.89■■□□□ 1.58
RETREG3-210ENST00000590541 IL2RBP14784 551 aa24.88■■□□□ 1.57
RETREG3-210ENST00000590541 USP31Q70CQ4 1352 aa24.88■■□□□ 1.57
RETREG3-210ENST00000590541 MON2Q7Z3U7 1717 aa24.87■■□□□ 1.57
RETREG3-210ENST00000590541 USP54Q70EL1 1684 aa24.85■■□□□ 1.57
RETREG3-210ENST00000590541 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.85■■□□□ 1.57
RETREG3-210ENST00000590541 AKT1S1Q96B36 256 aa24.85■■□□□ 1.57
RETREG3-210ENST00000590541 GPR162Q16538 588 aa24.84■■□□□ 1.57
RETREG3-210ENST00000590541 LTN1O94822 1766 aa24.82■■□□□ 1.56
RETREG3-210ENST00000590541 ROCK2O75116 1388 aaKnown RBP24.82■■□□□ 1.56
RETREG3-210ENST00000590541 NME9Q86XW9 330 aa24.82■■□□□ 1.56
RETREG3-210ENST00000590541 ANKRD24Q8TF21 1146 aa24.82■■□□□ 1.56
RETREG3-210ENST00000590541 COL24A1Q17RW2 1714 aa24.81■■□□□ 1.56
RETREG3-210ENST00000590541 SLC16A10Q8TF71 515 aa24.81■■□□□ 1.56
RETREG3-210ENST00000590541 CD163L1Q9NR16 1453 aa24.81■■□□□ 1.56
RETREG3-210ENST00000590541 QSER1Q2KHR3 1735 aa24.81■■□□□ 1.56
RETREG3-210ENST00000590541 SBNO2Q9Y2G9 1366 aa24.8■■□□□ 1.56
RETREG3-210ENST00000590541 KLHL34Q8N239 644 aa24.79■■□□□ 1.56
RETREG3-210ENST00000590541 PNPLA7Q6ZV29 1317 aa24.79■■□□□ 1.56
RETREG3-210ENST00000590541 SLC27A3Q5K4L6 730 aa24.78■■□□□ 1.56
RETREG3-210ENST00000590541 POLD1P28340 1107 aa24.77■■□□□ 1.56
RETREG3-210ENST00000590541 KAT6BQ8WYB5 2073 aa24.76■■□□□ 1.55
RETREG3-210ENST00000590541 GIGYF1O75420 1035 aaPredicted RBP24.76■■□□□ 1.55
RETREG3-210ENST00000590541 SIN3AQ96ST3 1273 aa24.75■■□□□ 1.55
RETREG3-210ENST00000590541 TUBGCP6Q96RT7 1819 aa24.75■■□□□ 1.55
RETREG3-210ENST00000590541 KCNQ4P56696 695 aa24.74■■□□□ 1.55
RETREG3-210ENST00000590541 PELP1Q8IZL8 1130 aaKnown RBP24.74■■□□□ 1.55
RETREG3-210ENST00000590541 NLGN2Q8NFZ4 835 aa24.74■■□□□ 1.55
RETREG3-210ENST00000590541 DDX54Q8TDD1 881 aaKnown RBP24.74■■□□□ 1.55
RETREG3-210ENST00000590541 SHANK3Q9BYB0 1731 aa24.73■■□□□ 1.55
RETREG3-210ENST00000590541 TFCP2L1Q9NZI6 479 aa24.72■■□□□ 1.55
RETREG3-210ENST00000590541 GOLGB1Q14789 3259 aaKnown RBP24.71■■□□□ 1.55
RETREG3-210ENST00000590541 EDC4Q6P2E9 1401 aaKnown RBP24.7■■□□□ 1.55
RETREG3-210ENST00000590541 IP6K1Q92551 441 aa24.7■■□□□ 1.54
RETREG3-210ENST00000590541 SLC12A5Q9H2X9 1139 aa24.7■■□□□ 1.54
RETREG3-210ENST00000590541 PRIM1P49642 420 aaKnown RBP24.69■■□□□ 1.54
RETREG3-210ENST00000590541 HDGFL2Q7Z4V5 671 aaPredicted RBP24.69■■□□□ 1.54
RETREG3-210ENST00000590541 TMC1Q8TDI8 760 aa24.69■■□□□ 1.54
RETREG3-210ENST00000590541 LY75O60449 1722 aa24.69■■□□□ 1.54
RETREG3-210ENST00000590541 NSD2O96028 1365 aa24.68■■□□□ 1.54
RETREG3-210ENST00000590541 ANKRD36BQ8N2N9 1353 aa24.68■■□□□ 1.54
RETREG3-210ENST00000590541 IFFO2Q5TF58 517 aa24.68■■□□□ 1.54
RETREG3-210ENST00000590541 SYTL4Q96C24 671 aaPredicted RBP24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms