RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 HOXC9P31274 260 aa20.46■□□□□ 0.87
ATG4D-211ENST00000589753 IP6K1Q92551 441 aa20.46■□□□□ 0.87
ATG4D-211ENST00000589753 COL14A1Q05707 1796 aaKnown RBP20.46■□□□□ 0.87
ATG4D-211ENST00000589753 MIER1Q8N108 512 aa20.45■□□□□ 0.86
ATG4D-211ENST00000589753 COL18A1P39060 1754 aa20.44■□□□□ 0.86
ATG4D-211ENST00000589753 MEX3CQ5U5Q3 659 aaKnown RBP20.44■□□□□ 0.86
ATG4D-211ENST00000589753 CFAP53Q96M91 514 aa20.44■□□□□ 0.86
ATG4D-211ENST00000589753 LMO7Q8WWI1 1683 aa20.43■□□□□ 0.86
ATG4D-211ENST00000589753 HSP90AB2PQ58FF8 381 aa20.43■□□□□ 0.86
ATG4D-211ENST00000589753 BLMP54132 1417 aaPredicted RBP20.43■□□□□ 0.86
ATG4D-211ENST00000589753 C8orf37Q96NL8 207 aa20.42■□□□□ 0.86
ATG4D-211ENST00000589753 AXIN2Q9Y2T1 843 aa20.42■□□□□ 0.86
ATG4D-211ENST00000589753 INSRP06213 1382 aa20.42■□□□□ 0.86
ATG4D-211ENST00000589753 PLCH1Q4KWH8 1693 aa20.4■□□□□ 0.86
ATG4D-211ENST00000589753 NGLY1Q96IV0 654 aa20.4■□□□□ 0.86
ATG4D-211ENST00000589753 BTG4Q9NY30 223 aa20.4■□□□□ 0.86
ATG4D-211ENST00000589753 CAMTA1Q9Y6Y1 1673 aa20.4■□□□□ 0.86
ATG4D-211ENST00000589753 RGPD5Q99666 1765 aa20.39■□□□□ 0.86
ATG4D-211ENST00000589753 COL3A1P02461 1466 aaPredicted RBP20.39■□□□□ 0.85
ATG4D-211ENST00000589753 DIAPH1O60610 1272 aaKnown RBP20.38■□□□□ 0.85
ATG4D-211ENST00000589753 ANKRD24Q8TF21 1146 aa20.38■□□□□ 0.85
ATG4D-211ENST00000589753 LTV1Q96GA3 475 aaPredicted RBP20.38■□□□□ 0.85
ATG4D-211ENST00000589753 SLIT2O94813 1529 aa20.37■□□□□ 0.85
ATG4D-211ENST00000589753 COL5A2P05997 1499 aaPredicted RBP20.37■□□□□ 0.85
ATG4D-211ENST00000589753 CCER2I3L3R5 266 aa20.37■□□□□ 0.85
ATG4D-211ENST00000589753 EIF4A2Q14240 407 aaKnown RBP20.37■□□□□ 0.85
ATG4D-211ENST00000589753 CCDC184Q52MB2 194 aa20.37■□□□□ 0.85
ATG4D-211ENST00000589753 MRS2Q9HD23 443 aa20.37■□□□□ 0.85
ATG4D-211ENST00000589753 NWD2Q9ULI1 1742 aa20.36■□□□□ 0.85
ATG4D-211ENST00000589753 ERBB3P21860 1342 aa20.36■□□□□ 0.85
ATG4D-211ENST00000589753 EVA1CP58658 441 aa20.36■□□□□ 0.85
ATG4D-211ENST00000589753 CSB-PGBD3P0DP91 1061 aa20.35■□□□□ 0.85
ATG4D-211ENST00000589753 IL13P35225 146 aa20.35■□□□□ 0.85
ATG4D-211ENST00000589753 FNBP4Q8N3X1 1017 aaPredicted RBP20.35■□□□□ 0.85
ATG4D-211ENST00000589753 STRN4Q9NRL3 753 aa20.35■□□□□ 0.85
ATG4D-211ENST00000589753 NRAPQ86VF7 1730 aa20.34■□□□□ 0.85
ATG4D-211ENST00000589753 WDR17Q8IZU2 1322 aa20.33■□□□□ 0.85
ATG4D-211ENST00000589753 NUDCQ9Y266 331 aa20.33■□□□□ 0.85
ATG4D-211ENST00000589753 AFF2P51816 1311 aa20.32■□□□□ 0.84
ATG4D-211ENST00000589753 BCL9LQ86UU0 1499 aa20.32■□□□□ 0.84
ATG4D-211ENST00000589753 UNC5CLQ8IV45 518 aa20.32■□□□□ 0.84
ATG4D-211ENST00000589753 USP21Q9UK80 565 aa20.32■□□□□ 0.84
ATG4D-211ENST00000589753 FAM208AQ9UK61 1670 aaKnown RBP20.32■□□□□ 0.84
ATG4D-211ENST00000589753 U2SURPO15042 1029 aaKnown RBP20.3■□□□□ 0.84
ATG4D-211ENST00000589753 LARP1Q6PKG0 1096 aaKnown RBP20.3■□□□□ 0.84
ATG4D-211ENST00000589753 TOM1L2Q6ZVM7 507 aa20.3■□□□□ 0.84
ATG4D-211ENST00000589753 NLRP2Q9NX02 1062 aa20.3■□□□□ 0.84
ATG4D-211ENST00000589753 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.3■□□□□ 0.84
ATG4D-211ENST00000589753 NBPF6Q5VWK0 638 aa20.29■□□□□ 0.84
ATG4D-211ENST00000589753 NBPF4Q96M43 638 aa20.29■□□□□ 0.84
ATG4D-211ENST00000589753 EYA1Q99502 592 aa20.29■□□□□ 0.84
ATG4D-211ENST00000589753 CRB1P82279 1406 aa20.28■□□□□ 0.84
ATG4D-211ENST00000589753 RGPD1P0DJD0 1748 aa20.28■□□□□ 0.84
ATG4D-211ENST00000589753 WDR43Q15061 677 aaKnown RBP eCLIP20.28■□□□□ 0.84
ATG4D-211ENST00000589753 RGPD2P0DJD1 1756 aa20.28■□□□□ 0.84
ATG4D-211ENST00000589753 IGSF1Q8N6C5 1336 aa20.27■□□□□ 0.84
ATG4D-211ENST00000589753 U2AF1L5P0DN76 240 aaPredicted RBP20.27■□□□□ 0.84
ATG4D-211ENST00000589753 U2AF1Q01081 240 aaKnown RBP eCLIP20.27■□□□□ 0.84
ATG4D-211ENST00000589753 PNISRQ8TF01 805 aaKnown RBP20.27■□□□□ 0.84
ATG4D-211ENST00000589753 VPS72Q15906 364 aa20.26■□□□□ 0.83
ATG4D-211ENST00000589753 CARD10Q9BWT7 1032 aa20.26■□□□□ 0.83
ATG4D-211ENST00000589753 USHBP1Q8N6Y0 703 aa20.25■□□□□ 0.83
ATG4D-211ENST00000589753 CCDC9Q9Y3X0 531 aaKnown RBP20.25■□□□□ 0.83
ATG4D-211ENST00000589753 ZNF772Q68DY9 489 aaPredicted RBP20.24■□□□□ 0.83
ATG4D-211ENST00000589753 SULT6B1Q6IMI4 303 aa20.24■□□□□ 0.83
ATG4D-211ENST00000589753 TRPC5Q9UL62 973 aaPredicted RBP20.24■□□□□ 0.83
ATG4D-211ENST00000589753 NCAPD2Q15021 1401 aa20.24■□□□□ 0.83
ATG4D-211ENST00000589753 HMOX1P09601 288 aa20.23■□□□□ 0.83
ATG4D-211ENST00000589753 USP35Q9P2H5 1018 aa20.23■□□□□ 0.83
ATG4D-211ENST00000589753 SPATA31A1Q5TZJ5 1347 aa20.23■□□□□ 0.83
ATG4D-211ENST00000589753 SPATA31A5Q5VU36 1347 aa20.23■□□□□ 0.83
ATG4D-211ENST00000589753 SPATA31A7Q8IWB4 1347 aa20.23■□□□□ 0.83
ATG4D-211ENST00000589753 ATRNO75882 1429 aa20.22■□□□□ 0.83
ATG4D-211ENST00000589753 AEBP1Q8IUX7 1158 aa20.22■□□□□ 0.83
ATG4D-211ENST00000589753 FAM9BQ8IZU0 186 aa20.22■□□□□ 0.83
ATG4D-211ENST00000589753 ADAMTS8Q9UP79 889 aa20.22■□□□□ 0.83
ATG4D-211ENST00000589753 KDRP35968 1356 aa20.21■□□□□ 0.83
ATG4D-211ENST00000589753 PHF23Q9BUL5 403 aaPredicted RBP20.21■□□□□ 0.83
ATG4D-211ENST00000589753 QTRT2Q9H974 415 aaKnown RBP20.21■□□□□ 0.83
ATG4D-211ENST00000589753 FCHSD2O94868 740 aa20.2■□□□□ 0.82
ATG4D-211ENST00000589753 TCP11L2Q8N4U5 519 aa20.2■□□□□ 0.82
ATG4D-211ENST00000589753 THRAP3Q9Y2W1 955 aaKnown RBP20.2■□□□□ 0.82
ATG4D-211ENST00000589753 RSPH6AQ9H0K4 717 aa20.19■□□□□ 0.82
ATG4D-211ENST00000589753 ILDR2Q71H61 639 aa20.18■□□□□ 0.82
ATG4D-211ENST00000589753 RAPGEF4Q8WZA2 1011 aa20.18■□□□□ 0.82
ATG4D-211ENST00000589753 GJD4Q96KN9 370 aaPredicted RBP20.18■□□□□ 0.82
ATG4D-211ENST00000589753 PNNQ9H307 717 aaKnown RBP20.18■□□□□ 0.82
ATG4D-211ENST00000589753 PRKAR2BP31323 418 aa20.17■□□□□ 0.82
ATG4D-211ENST00000589753 GLI3P10071 1580 aa20.17■□□□□ 0.82
ATG4D-211ENST00000589753 IL2RBP14784 551 aa20.16■□□□□ 0.82
ATG4D-211ENST00000589753 BARGINQ6ZT62 677 aa20.16■□□□□ 0.82
ATG4D-211ENST00000589753 RGS17Q9UGC6 210 aaPredicted RBP20.16■□□□□ 0.82
ATG4D-211ENST00000589753 TATP17735 454 aaPredicted RBP20.15■□□□□ 0.82
ATG4D-211ENST00000589753 MEGF6O75095 1541 aa20.15■□□□□ 0.82
ATG4D-211ENST00000589753 WNK3Q9BYP7 1800 aa20.15■□□□□ 0.82
ATG4D-211ENST00000589753 PARP4Q9UKK3 1724 aaKnown RBP20.14■□□□□ 0.81
ATG4D-211ENST00000589753 DISP2A7MBM2 1401 aa20.14■□□□□ 0.81
ATG4D-211ENST00000589753 NEFMP07197 916 aa20.14■□□□□ 0.81
ATG4D-211ENST00000589753 CCDC146Q8IYE0 955 aa20.14■□□□□ 0.81
ATG4D-211ENST00000589753 PLEKHF1Q96S99 279 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms