RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.27□□□□□ -0.45
VMP1-208ENST00000588617 HCSTQ9UBK5 93 aa12.27□□□□□ -0.45
VMP1-208ENST00000588617 GPSM3Q9Y4H4 160 aa12.27□□□□□ -0.45
VMP1-208ENST00000588617 KCNH2Q12809 1159 aa12.26□□□□□ -0.45
VMP1-208ENST00000588617 DPYDQ12882 1025 aa12.26□□□□□ -0.45
VMP1-208ENST00000588617 EML3Q32P44 896 aa12.26□□□□□ -0.45
VMP1-208ENST00000588617 PDXDC2PQ6P474 469 aa12.26□□□□□ -0.45
VMP1-208ENST00000588617 SCUBE3Q8IX30 993 aa12.26□□□□□ -0.45
VMP1-208ENST00000588617 OGFOD1Q8N543 542 aa12.26□□□□□ -0.45
VMP1-208ENST00000588617 BIN2Q9UBW5 565 aaPredicted RBP12.26□□□□□ -0.45
VMP1-208ENST00000588617 MRPL50Q8N5N7 158 aaKnown RBP12.25□□□□□ -0.45
VMP1-208ENST00000588617 ARMC2Q8NEN0 867 aa12.25□□□□□ -0.45
VMP1-208ENST00000588617 USP35Q9P2H5 1018 aa12.25□□□□□ -0.45
VMP1-208ENST00000588617 MARSP56192 900 aaKnown RBP12.24□□□□□ -0.45
VMP1-208ENST00000588617 SWI5Q1ZZU3 235 aa12.24□□□□□ -0.45
VMP1-208ENST00000588617 MAP7D1Q3KQU3 841 aa12.24□□□□□ -0.45
VMP1-208ENST00000588617 ZNF594Q96JF6 807 aaPredicted RBP12.24□□□□□ -0.45
VMP1-208ENST00000588617 TRIM50Q86XT4 487 aa12.23□□□□□ -0.45
VMP1-208ENST00000588617 GPKOWQ92917 476 aaPredicted RBP eCLIP12.23□□□□□ -0.457e-23■■□□□ 12.4
VMP1-208ENST00000588617 MRRFQ96E11 262 aaKnown RBP12.23□□□□□ -0.45
VMP1-208ENST00000588617 THAP11Q96EK4 314 aa12.23□□□□□ -0.45
VMP1-208ENST00000588617 NR1I2O75469 434 aa12.22□□□□□ -0.45
VMP1-208ENST00000588617 SIRT1Q96EB6 747 aa12.22□□□□□ -0.45
VMP1-208ENST00000588617 BCL2L13Q9BXK5 485 aa12.22□□□□□ -0.45
VMP1-208ENST00000588617 DNAAF2Q9NVR5 837 aaKnown RBP12.22□□□□□ -0.45
VMP1-208ENST00000588617 CCNYL3P0C7X3 344 aa12.21□□□□□ -0.45
VMP1-208ENST00000588617 SCNN1AP37088 669 aa12.21□□□□□ -0.45
VMP1-208ENST00000588617 ATP1A2P50993 1020 aa12.21□□□□□ -0.45
VMP1-208ENST00000588617 OCSTAMPQ9BR26 566 aa12.21□□□□□ -0.45
VMP1-208ENST00000588617 EVA1BQ9NVM1 165 aa12.21□□□□□ -0.45
VMP1-208ENST00000588617 KIAA1522Q9P206 1035 aaPredicted RBP12.21□□□□□ -0.45
VMP1-208ENST00000588617 NOD1Q9Y239 953 aa12.21□□□□□ -0.45
VMP1-208ENST00000588617 ZNF16P17020 682 aaPredicted RBP12.2□□□□□ -0.46
VMP1-208ENST00000588617 PPP4CP60510 307 aa12.2□□□□□ -0.46
VMP1-208ENST00000588617 CLDN10P78369 228 aa12.2□□□□□ -0.46
VMP1-208ENST00000588617 NOM1Q5C9Z4 860 aaKnown RBP12.2□□□□□ -0.46
VMP1-208ENST00000588617 NBPF14Q5TI25 921 aa12.2□□□□□ -0.46
VMP1-208ENST00000588617 CHIC2Q9UKJ5 165 aa12.2□□□□□ -0.46
VMP1-208ENST00000588617 PCDHB3Q9Y5E6 796 aa12.2□□□□□ -0.46
VMP1-208ENST00000588617 TRAF7Q6Q0C0 670 aa12.19□□□□□ -0.46
VMP1-208ENST00000588617 ADAM32Q8TC27 787 aa12.19□□□□□ -0.46
VMP1-208ENST00000588617 NUDT12Q9BQG2 462 aa12.19□□□□□ -0.46
VMP1-208ENST00000588617 ARHGAP9Q9BRR9 750 aa12.19□□□□□ -0.46
VMP1-208ENST00000588617 IGSF5Q9NSI5 407 aa12.19□□□□□ -0.46
VMP1-208ENST00000588617 APLP1P51693 650 aa12.18□□□□□ -0.46
VMP1-208ENST00000588617 TSGA10IPQ3SY00 556 aa12.18□□□□□ -0.46
VMP1-208ENST00000588617 THSD4Q6ZMP0 1018 aa12.17□□□□□ -0.46
VMP1-208ENST00000588617 ZBTB33Q86T24 672 aa12.17□□□□□ -0.46
VMP1-208ENST00000588617 LARGE2Q8N3Y3 721 aa12.17□□□□□ -0.46
VMP1-208ENST00000588617 C1orf216Q8TAB5 229 aa12.17□□□□□ -0.46
VMP1-208ENST00000588617 GIPC2Q8TF65 315 aa12.17□□□□□ -0.46
VMP1-208ENST00000588617 PRMT3O60678 531 aa12.16□□□□□ -0.46
VMP1-208ENST00000588617 RBM19Q9Y4C8 960 aaKnown RBP12.16□□□□□ -0.46
VMP1-208ENST00000588617 ANKRD33BA6NCL7 494 aa12.15□□□□□ -0.46
VMP1-208ENST00000588617 GOLGA8CPA6NN73 597 aa12.15□□□□□ -0.46
VMP1-208ENST00000588617 ABL1P00519 1130 aa12.15□□□□□ -0.46
VMP1-208ENST00000588617 DZIP3Q86Y13 1208 aaKnown RBP12.15□□□□□ -0.46
VMP1-208ENST00000588617 WNT2BQ93097 391 aa12.15□□□□□ -0.46
VMP1-208ENST00000588617 DOLKQ9UPQ8 538 aa12.15□□□□□ -0.46
VMP1-208ENST00000588617 HPS5Q9UPZ3 1129 aa12.15□□□□□ -0.46
VMP1-208ENST00000588617 DXOO77932 396 aaKnown RBP12.14□□□□□ -0.47
VMP1-208ENST00000588617 PTPN5P54829 565 aa12.14□□□□□ -0.47
VMP1-208ENST00000588617 MSS51Q4VC12 460 aa12.14□□□□□ -0.47
VMP1-208ENST00000588617 ANKK1Q8NFD2 765 aa12.14□□□□□ -0.47
VMP1-208ENST00000588617 PRIMPOLQ96LW4 560 aa12.14□□□□□ -0.47
VMP1-208ENST00000588617 ZBTB7BO15156 539 aaPredicted RBP12.13□□□□□ -0.47
VMP1-208ENST00000588617 SEC13P55735 322 aa12.13□□□□□ -0.47
VMP1-208ENST00000588617 OXLD1Q5BKU9 147 aa12.13□□□□□ -0.47
VMP1-208ENST00000588617 PLA2G2EQ9NZK7 142 aa12.13□□□□□ -0.47
VMP1-208ENST00000588617 GTF2IP78347 998 aa12.12□□□□□ -0.47
VMP1-208ENST00000588617 SIX5Q8N196 739 aa12.12□□□□□ -0.47
VMP1-208ENST00000588617 CCDC85AQ96PX6 553 aaPredicted RBP12.12□□□□□ -0.47
VMP1-208ENST00000588617 KIAA1024Q9UPX6 916 aa12.12□□□□□ -0.47
VMP1-208ENST00000588617 ZNF326Q5BKZ1 582 aaKnown RBP12.11□□□□□ -0.47
VMP1-208ENST00000588617 FAM160A2Q8N612 972 aaPredicted RBP12.11□□□□□ -0.47
VMP1-208ENST00000588617 SPSB2Q99619 263 aa12.11□□□□□ -0.47
VMP1-208ENST00000588617 CXXC1Q9P0U4 656 aaPredicted RBP12.11□□□□□ -0.47
VMP1-208ENST00000588617 DKK1O94907 266 aa12.1□□□□□ -0.47
VMP1-208ENST00000588617 CCDC102BQ68D86 513 aa12.1□□□□□ -0.47
VMP1-208ENST00000588617 TAS1R3Q7RTX0 852 aa12.1□□□□□ -0.47
VMP1-208ENST00000588617 NPAS4Q8IUM7 802 aa12.1□□□□□ -0.47
VMP1-208ENST00000588617 ANO2Q9NQ90 1003 aa12.1□□□□□ -0.47
VMP1-208ENST00000588617 EGFL7Q9UHF1 273 aa12.1□□□□□ -0.47
VMP1-208ENST00000588617 TSR3Q9UJK0 312 aaKnown RBP12.1□□□□□ -0.47
VMP1-208ENST00000588617 SOWAHBA6NEL2 793 aa12.09□□□□□ -0.47
VMP1-208ENST00000588617 H3BRB1 525 aa12.09□□□□□ -0.47
VMP1-208ENST00000588617 MMP16P51512 607 aa12.09□□□□□ -0.47
VMP1-208ENST00000588617 ZNF211Q13398 564 aaPredicted RBP12.09□□□□□ -0.47
VMP1-208ENST00000588617 CARD14Q9BXL6 1004 aa12.09□□□□□ -0.47
VMP1-208ENST00000588617 TUT1Q9H6E5 874 aaKnown RBP12.09□□□□□ -0.47
VMP1-208ENST00000588617 SFI1A8K8P3 1242 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 BCAMP50895 628 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 PSME1Q06323 249 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 OCLNQ16625 522 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 SH3BP5LQ7L8J4 393 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 GLYCTKQ8IVS8 523 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 TPCN2Q8NHX9 752 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 PRDM9Q9NQV7 894 aa12.08□□□□□ -0.48
VMP1-208ENST00000588617 GIGYF1O75420 1035 aaPredicted RBP12.07□□□□□ -0.48
VMP1-208ENST00000588617 MAGEB6P1A0A0J9YX57 407 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms