RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 HOXC9P31274 260 aa14.53□□□□□ -0.08
SMARCA4-213ENST00000587988 AMPHP49418 695 aa14.53□□□□□ -0.08
SMARCA4-213ENST00000587988 IP6K1Q92551 441 aa14.53□□□□□ -0.08
SMARCA4-213ENST00000587988 BCL9LQ86UU0 1499 aa14.52□□□□□ -0.08
SMARCA4-213ENST00000587988 PPP2R1AP30153 589 aa14.52□□□□□ -0.09
SMARCA4-213ENST00000587988 PRKRIP1Q9H875 184 aaPredicted RBP14.52□□□□□ -0.09
SMARCA4-213ENST00000587988 MTHFSP49914 203 aa14.51□□□□□ -0.09
SMARCA4-213ENST00000587988 RALBP1Q15311 655 aa14.51□□□□□ -0.09
SMARCA4-213ENST00000587988 HSP90AB2PQ58FF8 381 aa14.51□□□□□ -0.09
SMARCA4-213ENST00000587988 RGS17Q9UGC6 210 aaPredicted RBP14.51□□□□□ -0.09
SMARCA4-213ENST00000587988 USP21Q9UK80 565 aa14.51□□□□□ -0.09
SMARCA4-213ENST00000587988 NRAPQ86VF7 1730 aa14.51□□□□□ -0.09
SMARCA4-213ENST00000587988 SMG6Q86US8 1419 aaKnown RBP14.5□□□□□ -0.09
SMARCA4-213ENST00000587988 NWD2Q9ULI1 1742 aa14.5□□□□□ -0.09
SMARCA4-213ENST00000587988 UNC5CLQ8IV45 518 aa14.5□□□□□ -0.09
SMARCA4-213ENST00000587988 ABCC6O95255 1503 aa14.5□□□□□ -0.09
SMARCA4-213ENST00000587988 COL5A2P05997 1499 aaPredicted RBP14.5□□□□□ -0.09
SMARCA4-213ENST00000587988 RTL1A6NKG5 1358 aa14.49□□□□□ -0.09
SMARCA4-213ENST00000587988 FLT4P35916 1363 aa14.49□□□□□ -0.09
SMARCA4-213ENST00000587988 LTV1Q96GA3 475 aaPredicted RBP14.49□□□□□ -0.09
SMARCA4-213ENST00000587988 STRN4Q9NRL3 753 aa14.49□□□□□ -0.09
SMARCA4-213ENST00000587988 KIF24Q5T7B8 1368 aa14.48□□□□□ -0.09
SMARCA4-213ENST00000587988 EVA1CP58658 441 aa14.48□□□□□ -0.09
SMARCA4-213ENST00000587988 LARP1Q6PKG0 1096 aaKnown RBP14.48□□□□□ -0.09
SMARCA4-213ENST00000587988 ANKRD24Q8TF21 1146 aa14.48□□□□□ -0.09
SMARCA4-213ENST00000587988 BLMP54132 1417 aaPredicted RBP14.48□□□□□ -0.09
SMARCA4-213ENST00000587988 INSRP06213 1382 aa14.47□□□□□ -0.09
SMARCA4-213ENST00000587988 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.47□□□□□ -0.09
SMARCA4-213ENST00000587988 CDK12Q9NYV4 1490 aaPredicted RBP14.47□□□□□ -0.09
SMARCA4-213ENST00000587988 ANP32CO43423 234 aa14.47□□□□□ -0.09
SMARCA4-213ENST00000587988 DIEXFQ68CQ4 756 aaKnown RBP14.47□□□□□ -0.09
SMARCA4-213ENST00000587988 PHF23Q9BUL5 403 aaPredicted RBP14.47□□□□□ -0.09
SMARCA4-213ENST00000587988 ERBB3P21860 1342 aa14.46□□□□□ -0.09
SMARCA4-213ENST00000587988 MYBBP1AQ9BQG0 1328 aaKnown RBP14.46□□□□□ -0.09
SMARCA4-213ENST00000587988 QTRT2Q9H974 415 aaKnown RBP14.46□□□□□ -0.09
SMARCA4-213ENST00000587988 WDR17Q8IZU2 1322 aa14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 RGPD2P0DJD1 1756 aa14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 ATRNO75882 1429 aa14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 CSB-PGBD3P0DP91 1061 aa14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 EIF4A2Q14240 407 aaKnown RBP14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 VPS72Q15906 364 aa14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 ZNF772Q68DY9 489 aaPredicted RBP14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 POTEAQ6S8J7 498 aa14.45□□□□□ -0.1
SMARCA4-213ENST00000587988 TOM1L2Q6ZVM7 507 aa14.44□□□□□ -0.1
SMARCA4-213ENST00000587988 TRPC5Q9UL62 973 aaPredicted RBP14.44□□□□□ -0.1
SMARCA4-213ENST00000587988 COL3A1P02461 1466 aaPredicted RBP14.44□□□□□ -0.1
SMARCA4-213ENST00000587988 IL13P35225 146 aa14.43□□□□□ -0.1
SMARCA4-213ENST00000587988 USP35Q9P2H5 1018 aa14.43□□□□□ -0.1
SMARCA4-213ENST00000587988 CCDC9Q9Y3X0 531 aaKnown RBP14.43□□□□□ -0.1
SMARCA4-213ENST00000587988 SPATA31A5Q5VU36 1347 aa14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 SPATA31A7Q8IWB4 1347 aa14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 CRB1P82279 1406 aa14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 NBPF6Q5VWK0 638 aa14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 GJD4Q96KN9 370 aaPredicted RBP14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 NBPF4Q96M43 638 aa14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 NLRP2Q9NX02 1062 aa14.42□□□□□ -0.1
SMARCA4-213ENST00000587988 SPATA31A1Q5TZJ5 1347 aa14.41□□□□□ -0.1
SMARCA4-213ENST00000587988 DIAPH1O60610 1272 aaKnown RBP14.41□□□□□ -0.1
SMARCA4-213ENST00000587988 CCDC184Q52MB2 194 aa14.41□□□□□ -0.1
SMARCA4-213ENST00000587988 USHBP1Q8N6Y0 703 aa14.41□□□□□ -0.1
SMARCA4-213ENST00000587988 EYA1Q99502 592 aa14.41□□□□□ -0.1
SMARCA4-213ENST00000587988 GLI3P10071 1580 aa14.41□□□□□ -0.1
SMARCA4-213ENST00000587988 FAM208AQ9UK61 1670 aaKnown RBP14.4□□□□□ -0.1
SMARCA4-213ENST00000587988 CFAP53Q96M91 514 aa14.4□□□□□ -0.1
SMARCA4-213ENST00000587988 CARD10Q9BWT7 1032 aa14.4□□□□□ -0.1
SMARCA4-213ENST00000587988 RBM6P78332 1123 aaKnown RBP14.38□□□□□ -0.11
SMARCA4-213ENST00000587988 TCP11L2Q8N4U5 519 aa14.38□□□□□ -0.11
SMARCA4-213ENST00000587988 RGPD1P0DJD0 1748 aa14.38□□□□□ -0.11
SMARCA4-213ENST00000587988 RXRBP28702 533 aa14.37□□□□□ -0.11
SMARCA4-213ENST00000587988 FAM98CQ17RN3 349 aaKnown RBP14.37□□□□□ -0.11
SMARCA4-213ENST00000587988 IGSF1Q8N6C5 1336 aa14.37□□□□□ -0.11
SMARCA4-213ENST00000587988 NCAPD2Q15021 1401 aa14.36□□□□□ -0.11
SMARCA4-213ENST00000587988 U2SURPO15042 1029 aaKnown RBP14.36□□□□□ -0.11
SMARCA4-213ENST00000587988 BARGINQ6ZT62 677 aa14.36□□□□□ -0.11
SMARCA4-213ENST00000587988 AEBP1Q8IUX7 1158 aa14.36□□□□□ -0.11
SMARCA4-213ENST00000587988 MIER1Q8N108 512 aa14.36□□□□□ -0.11
SMARCA4-213ENST00000587988 THRAP3Q9Y2W1 955 aaKnown RBP14.36□□□□□ -0.11
SMARCA4-213ENST00000587988 SULT6B1Q6IMI4 303 aa14.35□□□□□ -0.11
SMARCA4-213ENST00000587988 WNK3Q9BYP7 1800 aa14.34□□□□□ -0.11
SMARCA4-213ENST00000587988 DISP2A7MBM2 1401 aa14.34□□□□□ -0.11
SMARCA4-213ENST00000587988 ONECUT3O60422 494 aaPredicted RBP14.34□□□□□ -0.11
SMARCA4-213ENST00000587988 HMOX1P09601 288 aa14.34□□□□□ -0.11
SMARCA4-213ENST00000587988 NUDCQ9Y266 331 aa14.34□□□□□ -0.11
SMARCA4-213ENST00000587988 MEGF6O75095 1541 aa14.33□□□□□ -0.12
SMARCA4-213ENST00000587988 IL2RBP14784 551 aa14.33□□□□□ -0.12
SMARCA4-213ENST00000587988 MRS2Q9HD23 443 aa14.33□□□□□ -0.12
SMARCA4-213ENST00000587988 THSD7AQ9UPZ6 1657 aa14.33□□□□□ -0.12
SMARCA4-213ENST00000587988 U2AF1L5P0DN76 240 aaPredicted RBP14.32□□□□□ -0.12
SMARCA4-213ENST00000587988 U2AF1Q01081 240 aaKnown RBP eCLIP14.32□□□□□ -0.12
SMARCA4-213ENST00000587988 SEPT12Q8IYM1 358 aa14.32□□□□□ -0.12
SMARCA4-213ENST00000587988 KDRP35968 1356 aa14.32□□□□□ -0.12
SMARCA4-213ENST00000587988 A0A0G2JS52 829 aa14.31□□□□□ -0.12
SMARCA4-213ENST00000587988 MYT1Q01538 1121 aa14.31□□□□□ -0.12
SMARCA4-213ENST00000587988 RGS12O14924 1447 aa14.31□□□□□ -0.12
SMARCA4-213ENST00000587988 TATP17735 454 aaPredicted RBP14.3□□□□□ -0.12
SMARCA4-213ENST00000587988 RAPGEF4Q8WZA2 1011 aa14.3□□□□□ -0.12
SMARCA4-213ENST00000587988 RSPH6AQ9H0K4 717 aa14.3□□□□□ -0.12
SMARCA4-213ENST00000587988 PARP4Q9UKK3 1724 aaKnown RBP14.29□□□□□ -0.12
SMARCA4-213ENST00000587988 BRWD3Q6RI45 1802 aa14.29□□□□□ -0.12
SMARCA4-213ENST00000587988 PNISRQ8TF01 805 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms