RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 PLEKHG3A1L390 1219 aa11.18□□□□□ -0.62
VMP1-204ENST00000587259 GCP02774 474 aa11.18□□□□□ -0.62
VMP1-204ENST00000587259 SRPK2P78362 688 aaKnown RBP11.18□□□□□ -0.62
VMP1-204ENST00000587259 PDGFDQ9GZP0 370 aaPredicted RBP11.18□□□□□ -0.62
VMP1-204ENST00000587259 PPIP5K1Q6PFW1 1433 aa11.18□□□□□ -0.62
VMP1-204ENST00000587259 RREB1Q92766 1687 aa11.17□□□□□ -0.62
VMP1-204ENST00000587259 COL5A2P05997 1499 aaPredicted RBP11.17□□□□□ -0.62
VMP1-204ENST00000587259 SOX12O15370 315 aa11.16□□□□□ -0.62
VMP1-204ENST00000587259 ANO8Q9HCE9 1232 aaPredicted RBP11.16□□□□□ -0.62
VMP1-204ENST00000587259 TIMELESSQ9UNS1 1208 aa11.16□□□□□ -0.62
VMP1-204ENST00000587259 CPDO75976 1380 aa11.16□□□□□ -0.62
VMP1-204ENST00000587259 CABP1Q9NZU7 370 aa11.15□□□□□ -0.62
VMP1-204ENST00000587259 AXIN2Q9Y2T1 843 aa11.15□□□□□ -0.62
VMP1-204ENST00000587259 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 YY1P25490 414 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 NLRP6P59044 892 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 SPDYE2Q495Y8 402 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 NLRP13Q86W25 1043 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 PARD3Q8TEW0 1356 aa11.14□□□□□ -0.63
VMP1-204ENST00000587259 CENPJQ9HC77 1338 aaPredicted RBP11.13□□□□□ -0.63
VMP1-204ENST00000587259 NBPF14Q5TI25 921 aa11.13□□□□□ -0.63
VMP1-204ENST00000587259 PPP1R1BQ9UD71 204 aaPredicted RBP11.13□□□□□ -0.63
VMP1-204ENST00000587259 LRRC37A3O60309 1634 aa11.13□□□□□ -0.63
VMP1-204ENST00000587259 PEAK1Q9H792 1746 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 PARP4Q9UKK3 1724 aaKnown RBP11.12□□□□□ -0.63
VMP1-204ENST00000587259 USP6P35125 1406 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 CRB1P82279 1406 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 PITPNM1O00562 1244 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 KCNQ2O43526 872 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 TOM1L2Q6ZVM7 507 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 MARCH10Q8NA82 808 aaPredicted RBP11.12□□□□□ -0.63
VMP1-204ENST00000587259 STAC3Q96MF2 364 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 SPON1Q9HCB6 807 aa11.12□□□□□ -0.63
VMP1-204ENST00000587259 QRICH2Q9H0J4 1663 aa11.11□□□□□ -0.63
VMP1-204ENST00000587259 ZBTB7AO95365 584 aa11.11□□□□□ -0.63
VMP1-204ENST00000587259 PROM2Q8N271 834 aa11.11□□□□□ -0.63
VMP1-204ENST00000587259 THRAP3Q9Y2W1 955 aaKnown RBP11.11□□□□□ -0.63
VMP1-204ENST00000587259 PIK3C2AO00443 1686 aa11.11□□□□□ -0.63
VMP1-204ENST00000587259 OVOS2A0A0G2JMS6 1433 aa11.1□□□□□ -0.63
VMP1-204ENST00000587259 OVOS2A0A0J9YW53 1432 aa11.1□□□□□ -0.63
VMP1-204ENST00000587259 OVOS2Q6IE36 1432 aa11.1□□□□□ -0.63
VMP1-204ENST00000587259 DDB1Q16531 1140 aa11.1□□□□□ -0.63
VMP1-204ENST00000587259 SLIT3O75094 1523 aa11.09□□□□□ -0.63
VMP1-204ENST00000587259 KIAA1210Q9ULL0 1709 aa11.09□□□□□ -0.63
VMP1-204ENST00000587259 COL18A1P39060 1754 aa11.09□□□□□ -0.63
VMP1-204ENST00000587259 AATKQ6ZMQ8 1374 aa11.09□□□□□ -0.63
VMP1-204ENST00000587259 ZNF692Q9BU19 519 aaPredicted RBP11.09□□□□□ -0.63
VMP1-204ENST00000587259 BCL11BQ9C0K0 894 aaPredicted RBP11.09□□□□□ -0.63
VMP1-204ENST00000587259 SBF2Q86WG5 1849 aa11.08□□□□□ -0.64
VMP1-204ENST00000587259 CSB-PGBD3P0DP91 1061 aa11.08□□□□□ -0.64
VMP1-204ENST00000587259 L3MBTL2Q969R5 705 aa11.08□□□□□ -0.64
VMP1-204ENST00000587259 SIN3AQ96ST3 1273 aa11.08□□□□□ -0.64
VMP1-204ENST00000587259 CPSF1Q10570 1443 aaKnown RBP11.08□□□□□ -0.64
VMP1-204ENST00000587259 RGPD5Q99666 1765 aa11.08□□□□□ -0.64
VMP1-204ENST00000587259 WDR17Q8IZU2 1322 aa11.08□□□□□ -0.64
VMP1-204ENST00000587259 ACSBG1Q96GR2 724 aa11.07□□□□□ -0.64
VMP1-204ENST00000587259 TTC21BQ7Z4L5 1316 aa11.07□□□□□ -0.64
VMP1-204ENST00000587259 CASZ1Q86V15 1759 aa11.06□□□□□ -0.64
VMP1-204ENST00000587259 MYOM1P52179 1685 aa11.06□□□□□ -0.64
VMP1-204ENST00000587259 PLSCR1O15162 318 aa11.06□□□□□ -0.64
VMP1-204ENST00000587259 PTGER2P43116 358 aa11.06□□□□□ -0.64
VMP1-204ENST00000587259 ARHGEF25Q86VW2 580 aa11.06□□□□□ -0.64
VMP1-204ENST00000587259 PIP4P2Q8N4L2 257 aa11.06□□□□□ -0.64
VMP1-204ENST00000587259 WNK3Q9BYP7 1800 aa11.05□□□□□ -0.64
VMP1-204ENST00000587259 NEUROD1Q13562 356 aa11.05□□□□□ -0.64
VMP1-204ENST00000587259 TXNRD1Q16881 649 aa11.05□□□□□ -0.64
VMP1-204ENST00000587259 TONSLQ96HA7 1378 aa11.04□□□□□ -0.64
VMP1-204ENST00000587259 NINLQ9Y2I6 1382 aa11.04□□□□□ -0.64
VMP1-204ENST00000587259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.04□□□□□ -0.64
VMP1-204ENST00000587259 EVC2Q86UK5 1308 aa11.04□□□□□ -0.64
VMP1-204ENST00000587259 CARD10Q9BWT7 1032 aa11.03□□□□□ -0.64
VMP1-204ENST00000587259 NFAT5O94916 1531 aa11.03□□□□□ -0.64
VMP1-204ENST00000587259 AKAP12Q02952 1782 aa11.03□□□□□ -0.64
VMP1-204ENST00000587259 EXOC5O00471 708 aa11.02□□□□□ -0.65
VMP1-204ENST00000587259 NME9Q86XW9 330 aa11.02□□□□□ -0.65
VMP1-204ENST00000587259 FHDC1Q9C0D6 1143 aaPredicted RBP11.02□□□□□ -0.65
VMP1-204ENST00000587259 STK32BQ9NY57 414 aa11.02□□□□□ -0.65
VMP1-204ENST00000587259 RGPD3A6NKT7 1758 aaPredicted RBP11.02□□□□□ -0.65
VMP1-204ENST00000587259 RGPD4Q7Z3J3 1758 aa11.02□□□□□ -0.65
VMP1-204ENST00000587259 BRD4O60885 1362 aaPredicted RBP11.02□□□□□ -0.65
VMP1-204ENST00000587259 ROCK2O75116 1388 aaKnown RBP11.02□□□□□ -0.65
VMP1-204ENST00000587259 TRPM1Q7Z4N2 1603 aa11.02□□□□□ -0.65
VMP1-204ENST00000587259 KTN1Q86UP2 1357 aaKnown RBP11.02□□□□□ -0.65
VMP1-204ENST00000587259 SLC15A2Q16348 729 aa11.01□□□□□ -0.65
VMP1-204ENST00000587259 NLRP2Q9NX02 1062 aa11.01□□□□□ -0.65
VMP1-204ENST00000587259 CLEC11AQ9Y240 323 aa11.01□□□□□ -0.65
VMP1-204ENST00000587259 UTRNP46939 3433 aa11.01□□□□□ -0.65
VMP1-204ENST00000587259 ZNF316A6NFI3 1004 aaPredicted RBP11□□□□□ -0.65
VMP1-204ENST00000587259 KCNQ4P56696 695 aa11□□□□□ -0.65
VMP1-204ENST00000587259 ZNF827Q17R98 1081 aa11□□□□□ -0.65
VMP1-204ENST00000587259 KCNH5Q8NCM2 988 aa11□□□□□ -0.65
VMP1-204ENST00000587259 SYT17Q9BSW7 474 aa11□□□□□ -0.65
VMP1-204ENST00000587259 SSUH2Q9Y2M2 353 aa11□□□□□ -0.65
VMP1-204ENST00000587259 TNS2Q63HR2 1409 aa11□□□□□ -0.65
VMP1-204ENST00000587259 C11orf95C9JLR9 678 aaPredicted RBP10.99□□□□□ -0.65
VMP1-204ENST00000587259 ZNF784Q8NCA9 323 aaPredicted RBP10.99□□□□□ -0.65
VMP1-204ENST00000587259 SGIP1Q9BQI5 828 aa10.99□□□□□ -0.65
VMP1-204ENST00000587259 CDCA7Q9BWT1 371 aaPredicted RBP10.99□□□□□ -0.65
VMP1-204ENST00000587259 BCL9O00512 1426 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms