RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ZNF692Q9BU19 519 aaPredicted RBP17.03■□□□□ 0.32
LIG3-209ENST00000586435 SBNO2Q9Y2G9 1366 aa17.02■□□□□ 0.32
LIG3-209ENST00000586435 TTC21AQ8NDW8 1320 aa17.02■□□□□ 0.32
LIG3-209ENST00000586435 SIN3AQ96ST3 1273 aa17.02■□□□□ 0.32
LIG3-209ENST00000586435 NFAT5O94916 1531 aa17.01■□□□□ 0.31
LIG3-209ENST00000586435 TTC21BQ7Z4L5 1316 aa17.01■□□□□ 0.31
LIG3-209ENST00000586435 WDR17Q8IZU2 1322 aa17.01■□□□□ 0.31
LIG3-209ENST00000586435 KCNH5Q8NCM2 988 aa17■□□□□ 0.31
LIG3-209ENST00000586435 BCL9O00512 1426 aa16.99■□□□□ 0.31
LIG3-209ENST00000586435 TOM1L2Q6ZVM7 507 aa16.99■□□□□ 0.31
LIG3-209ENST00000586435 ARHGEF25Q86VW2 580 aa16.99■□□□□ 0.31
LIG3-209ENST00000586435 ZBTB7CA1YPR0 619 aa16.98■□□□□ 0.31
LIG3-209ENST00000586435 DDB1Q16531 1140 aa16.98■□□□□ 0.31
LIG3-209ENST00000586435 CDCA7Q9BWT1 371 aaPredicted RBP16.98■□□□□ 0.31
LIG3-209ENST00000586435 NBPF14Q5TI25 921 aa16.97■□□□□ 0.31
LIG3-209ENST00000586435 AXIN2Q9Y2T1 843 aa16.97■□□□□ 0.31
LIG3-209ENST00000586435 KTN1Q86UP2 1357 aaKnown RBP16.97■□□□□ 0.31
LIG3-209ENST00000586435 NEUROD1Q13562 356 aa16.96■□□□□ 0.31
LIG3-209ENST00000586435 PLSCR1O15162 318 aa16.95■□□□□ 0.3
LIG3-209ENST00000586435 LTN1O94822 1766 aa16.94■□□□□ 0.3
LIG3-209ENST00000586435 CD163L1Q9NR16 1453 aa16.94■□□□□ 0.3
LIG3-209ENST00000586435 USP31Q70CQ4 1352 aa16.94■□□□□ 0.3
LIG3-209ENST00000586435 CARD10Q9BWT7 1032 aa16.94■□□□□ 0.3
LIG3-209ENST00000586435 CCDC7Q96M83 1385 aa16.93■□□□□ 0.3
LIG3-209ENST00000586435 CASZ1Q86V15 1759 aa16.92■□□□□ 0.3
LIG3-209ENST00000586435 BCL11BQ9C0K0 894 aaPredicted RBP16.92■□□□□ 0.3
LIG3-209ENST00000586435 TNS2Q63HR2 1409 aa16.91■□□□□ 0.3
LIG3-209ENST00000586435 MARCH10Q8NA82 808 aaPredicted RBP16.91■□□□□ 0.3
LIG3-209ENST00000586435 CSB-PGBD3P0DP91 1061 aa16.9■□□□□ 0.3
LIG3-209ENST00000586435 CARD11Q9BXL7 1154 aa16.9■□□□□ 0.3
LIG3-209ENST00000586435 NHSQ6T4R5 1651 aa16.9■□□□□ 0.3
LIG3-209ENST00000586435 SOX12O15370 315 aa16.89■□□□□ 0.29
LIG3-209ENST00000586435 EDC4Q6P2E9 1401 aaKnown RBP16.88■□□□□ 0.29
LIG3-209ENST00000586435 SPON1Q9HCB6 807 aa16.88■□□□□ 0.29
LIG3-209ENST00000586435 ERBB3P21860 1342 aa16.88■□□□□ 0.29
LIG3-209ENST00000586435 KCNQ2O43526 872 aa16.87■□□□□ 0.29
LIG3-209ENST00000586435 PUS7Q96PZ0 661 aaKnown RBP16.87■□□□□ 0.29
LIG3-209ENST00000586435 FAM208AQ9UK61 1670 aaKnown RBP16.87■□□□□ 0.29
LIG3-209ENST00000586435 EXOC5O00471 708 aa16.86■□□□□ 0.29
LIG3-209ENST00000586435 PTF1AQ7RTS3 328 aa16.86■□□□□ 0.29
LIG3-209ENST00000586435 HDGFL2Q7Z4V5 671 aaPredicted RBP16.86■□□□□ 0.29
LIG3-209ENST00000586435 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.86■□□□□ 0.29
LIG3-209ENST00000586435 ANO8Q9HCE9 1232 aaPredicted RBP16.86■□□□□ 0.29
LIG3-209ENST00000586435 TONSLQ96HA7 1378 aa16.86■□□□□ 0.29
LIG3-209ENST00000586435 NINLQ9Y2I6 1382 aa16.86■□□□□ 0.29
LIG3-209ENST00000586435 NME9Q86XW9 330 aa16.85■□□□□ 0.29
LIG3-209ENST00000586435 A0A1W2PP64 1363 aa16.85■□□□□ 0.29
LIG3-209ENST00000586435 PROM2Q8N271 834 aa16.84■□□□□ 0.29
LIG3-209ENST00000586435 TMC1Q8TDI8 760 aa16.83■□□□□ 0.28
LIG3-209ENST00000586435 SLC12A5Q9H2X9 1139 aa16.83■□□□□ 0.28
LIG3-209ENST00000586435 TERF2IPQ9NYB0 399 aa16.83■□□□□ 0.28
LIG3-209ENST00000586435 BTAF1O14981 1849 aa16.82■□□□□ 0.28
LIG3-209ENST00000586435 PPP1R1BQ9UD71 204 aaPredicted RBP16.82■□□□□ 0.28
LIG3-209ENST00000586435 PAPPAQ13219 1627 aa16.81■□□□□ 0.28
LIG3-209ENST00000586435 TXNRD1Q16881 649 aa16.81■□□□□ 0.28
LIG3-209ENST00000586435 KAT6BQ8WYB5 2073 aa16.81■□□□□ 0.28
LIG3-209ENST00000586435 IL2RBP14784 551 aa16.8■□□□□ 0.28
LIG3-209ENST00000586435 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
LIG3-209ENST00000586435 MYOM1P52179 1685 aa16.8■□□□□ 0.28
LIG3-209ENST00000586435 ANKRD24Q8TF21 1146 aa16.79■□□□□ 0.28
LIG3-209ENST00000586435 TESK2Q96S53 571 aa16.79■□□□□ 0.28
LIG3-209ENST00000586435 SLC24A1O60721 1099 aa16.78■□□□□ 0.28
LIG3-209ENST00000586435 STK32BQ9NY57 414 aa16.78■□□□□ 0.28
LIG3-209ENST00000586435 SLC15A2Q16348 729 aa16.77■□□□□ 0.28
LIG3-209ENST00000586435 IP6K1Q92551 441 aa16.76■□□□□ 0.27
LIG3-209ENST00000586435 PDGFDQ9GZP0 370 aaPredicted RBP16.76■□□□□ 0.27
LIG3-209ENST00000586435 QSER1Q2KHR3 1735 aa16.76■□□□□ 0.27
LIG3-209ENST00000586435 SHANK3Q9BYB0 1731 aa16.74■□□□□ 0.27
LIG3-209ENST00000586435 ST20-MTHFSA0A0A6YYL1 179 aa16.74■□□□□ 0.27
LIG3-209ENST00000586435 PTGER2P43116 358 aa16.74■□□□□ 0.27
LIG3-209ENST00000586435 ACSBG1Q96GR2 724 aa16.74■□□□□ 0.27
LIG3-209ENST00000586435 ANKRD36BQ8N2N9 1353 aa16.74■□□□□ 0.27
LIG3-209ENST00000586435 RGPD2P0DJD1 1756 aa16.74■□□□□ 0.27
LIG3-209ENST00000586435 DCAF8L1A6NGE4 600 aa16.73■□□□□ 0.27
LIG3-209ENST00000586435 ZBTB7AO95365 584 aa16.73■□□□□ 0.27
LIG3-209ENST00000586435 YY1P25490 414 aa16.73■□□□□ 0.27
LIG3-209ENST00000586435 COG3Q96JB2 828 aa16.72■□□□□ 0.27
LIG3-209ENST00000586435 MTFR1LQ9H019 292 aa16.72■□□□□ 0.27
LIG3-209ENST00000586435 DOT1LQ8TEK3 1739 aa16.72■□□□□ 0.27
LIG3-209ENST00000586435 RTL1A6NKG5 1358 aa16.72■□□□□ 0.27
LIG3-209ENST00000586435 MAP3K19Q56UN5 1328 aa16.71■□□□□ 0.27
LIG3-209ENST00000586435 LY75O60449 1722 aa16.71■□□□□ 0.27
LIG3-209ENST00000586435 COL24A1Q17RW2 1714 aa16.7■□□□□ 0.26
LIG3-209ENST00000586435 KIF20BQ96Q89 1820 aa16.7■□□□□ 0.26
LIG3-209ENST00000586435 HOXC9P31274 260 aa16.7■□□□□ 0.26
LIG3-209ENST00000586435 SGIP1Q9BQI5 828 aa16.7■□□□□ 0.26
LIG3-209ENST00000586435 ATF5Q9Y2D1 282 aaPredicted RBP16.69■□□□□ 0.26
LIG3-209ENST00000586435 TUBGCP6Q96RT7 1819 aa16.68■□□□□ 0.26
LIG3-209ENST00000586435 USP47Q96K76 1375 aa16.67■□□□□ 0.26
LIG3-209ENST00000586435 MEGF6O75095 1541 aa16.67■□□□□ 0.26
LIG3-209ENST00000586435 CHD4Q14839 1912 aa16.67■□□□□ 0.26
LIG3-209ENST00000586435 SLC27A3Q5K4L6 730 aa16.67■□□□□ 0.26
LIG3-209ENST00000586435 LTV1Q96GA3 475 aaPredicted RBP16.67■□□□□ 0.26
LIG3-209ENST00000586435 LRRC4BQ9NT99 713 aa16.67■□□□□ 0.26
LIG3-209ENST00000586435 MAP3K5Q99683 1374 aa16.66■□□□□ 0.26
LIG3-209ENST00000586435 AMPHP49418 695 aa16.66■□□□□ 0.26
LIG3-209ENST00000586435 TMF1P82094 1093 aa16.66■□□□□ 0.26
LIG3-209ENST00000586435 ZNF827Q17R98 1081 aa16.66■□□□□ 0.26
LIG3-209ENST00000586435 DDX54Q8TDD1 881 aaKnown RBP16.65■□□□□ 0.26
LIG3-209ENST00000586435 AKT1S1Q96B36 256 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms