RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 LTN1O94822 1766 aa39.38■■■■□ 3.89
LIG3-208ENST00000586407 TCP11L2Q8N4U5 519 aa39.36■■■■□ 3.89
LIG3-208ENST00000586407 CRB1P82279 1406 aa39.36■■■■□ 3.89
LIG3-208ENST00000586407 CCDC125Q86Z20 511 aa39.35■■■■□ 3.89
LIG3-208ENST00000586407 BARGINQ6ZT62 677 aa39.34■■■■□ 3.89
LIG3-208ENST00000586407 OVOS2A0A0J9YW53 1432 aa39.33■■■■□ 3.89
LIG3-208ENST00000586407 OVOS2Q6IE36 1432 aa39.33■■■■□ 3.89
LIG3-208ENST00000586407 MYOM1P52179 1685 aa39.32■■■■□ 3.89
LIG3-208ENST00000586407 ANKRD36BQ8N2N9 1353 aa39.32■■■■□ 3.88
LIG3-208ENST00000586407 DEFB132Q7Z7B7 95 aa39.31■■■■□ 3.88
LIG3-208ENST00000586407 TOM1L2Q6ZVM7 507 aa39.3■■■■□ 3.88
LIG3-208ENST00000586407 WNK3Q9BYP7 1800 aa39.28■■■■□ 3.88
LIG3-208ENST00000586407 PARP4Q9UKK3 1724 aaKnown RBP39.28■■■■□ 3.88
LIG3-208ENST00000586407 WDR17Q8IZU2 1322 aa39.27■■■■□ 3.88
LIG3-208ENST00000586407 SF3B2Q13435 895 aaKnown RBP39.25■■■■□ 3.87
LIG3-208ENST00000586407 THRAP3Q9Y2W1 955 aaKnown RBP39.25■■■■□ 3.87
LIG3-208ENST00000586407 RGPD1P0DJD0 1748 aa39.25■■■■□ 3.87
LIG3-208ENST00000586407 CSB-PGBD3P0DP91 1061 aa39.24■■■■□ 3.87
LIG3-208ENST00000586407 ABCC6O95255 1503 aa39.24■■■■□ 3.87
LIG3-208ENST00000586407 CDCA8Q53HL2 280 aa39.23■■■■□ 3.87
LIG3-208ENST00000586407 LRRC37A3O60309 1634 aa39.22■■■■□ 3.87
LIG3-208ENST00000586407 TNS1Q9HBL0 1735 aaKnown RBP39.21■■■■□ 3.87
LIG3-208ENST00000586407 PDE3BQ13370 1112 aa39.2■■■■□ 3.87
LIG3-208ENST00000586407 KIF20BQ96Q89 1820 aa39.19■■■■□ 3.86
LIG3-208ENST00000586407 HSPA5P11021 654 aaKnown RBP39.18■■■■□ 3.86
LIG3-208ENST00000586407 FBLN1P23142 703 aa39.18■■■■□ 3.86
LIG3-208ENST00000586407 COG3Q96JB2 828 aa39.18■■■■□ 3.86
LIG3-208ENST00000586407 POLR3GLQ9BT43 218 aa39.16■■■■□ 3.86
LIG3-208ENST00000586407 EIF4G2P78344 907 aaKnown RBP eCLIP39.15■■■■□ 3.86
LIG3-208ENST00000586407 GGNBP2Q9H3C7 697 aa39.15■■■■□ 3.86
LIG3-208ENST00000586407 FAM196AQ6ZSG2 479 aa39.13■■■■□ 3.85
LIG3-208ENST00000586407 CARD10Q9BWT7 1032 aa39.13■■■■□ 3.85
LIG3-208ENST00000586407 FYB1O15117 783 aa39.12■■■■□ 3.85
LIG3-208ENST00000586407 TRIM37O94972 964 aa39.12■■■■□ 3.85
LIG3-208ENST00000586407 CARD14Q9BXL6 1004 aa39.11■■■■□ 3.85
LIG3-208ENST00000586407 ERBB3P21860 1342 aa39.11■■■■□ 3.85
LIG3-208ENST00000586407 BAG6P46379 1132 aa39.09■■■■□ 3.85
LIG3-208ENST00000586407 PEAK1Q9H792 1746 aa39.09■■■■□ 3.85
LIG3-208ENST00000586407 DISP2A7MBM2 1401 aa39.08■■■■□ 3.85
LIG3-208ENST00000586407 NSD3Q9BZ95 1437 aa39.08■■■■□ 3.85
LIG3-208ENST00000586407 ANKRD24Q8TF21 1146 aa39.08■■■■□ 3.85
LIG3-208ENST00000586407 MAP3K19Q56UN5 1328 aa39.08■■■■□ 3.85
LIG3-208ENST00000586407 EN1Q05925 392 aaPredicted RBP39.07■■■■□ 3.85
LIG3-208ENST00000586407 DDB1Q16531 1140 aa39.07■■■■□ 3.85
LIG3-208ENST00000586407 NLRP2Q9NX02 1062 aa39.07■■■■□ 3.85
LIG3-208ENST00000586407 CCDC7Q96M83 1385 aa39.05■■■■□ 3.84
LIG3-208ENST00000586407 IP6K1Q92551 441 aa39.04■■■■□ 3.84
LIG3-208ENST00000586407 LTV1Q96GA3 475 aaPredicted RBP39.04■■■■□ 3.84
LIG3-208ENST00000586407 SBF2Q86WG5 1849 aa39.01■■■■□ 3.84
LIG3-208ENST00000586407 RGPD2P0DJD1 1756 aa39.01■■■■□ 3.84
LIG3-208ENST00000586407 RRS1Q15050 365 aaKnown RBP39.01■■■■□ 3.84
LIG3-208ENST00000586407 OVOS2A0A0G2JMS6 1433 aa39■■■■□ 3.83
LIG3-208ENST00000586407 AMPHP49418 695 aa38.99■■■■□ 3.83
LIG3-208ENST00000586407 HOXC9P31274 260 aa38.98■■■■□ 3.83
LIG3-208ENST00000586407 MARCH10Q8NA82 808 aaPredicted RBP38.98■■■■□ 3.83
LIG3-208ENST00000586407 CDCA7Q9BWT1 371 aaPredicted RBP38.98■■■■□ 3.83
LIG3-208ENST00000586407 FAM208AQ9UK61 1670 aaKnown RBP38.97■■■■□ 3.83
LIG3-208ENST00000586407 APBA3O96018 575 aa38.96■■■■□ 3.83
LIG3-208ENST00000586407 EZH2Q15910 746 aaKnown RBP38.95■■■■□ 3.83
LIG3-208ENST00000586407 C11orf95C9JLR9 678 aaPredicted RBP38.94■■■■□ 3.82
LIG3-208ENST00000586407 TNS2Q63HR2 1409 aa38.93■■■■□ 3.82
LIG3-208ENST00000586407 EXOC5O00471 708 aa38.9■■■■□ 3.82
LIG3-208ENST00000586407 PTF1AQ7RTS3 328 aa38.89■■■■□ 3.82
LIG3-208ENST00000586407 CAMKK2Q96RR4 588 aa38.89■■■■□ 3.82
LIG3-208ENST00000586407 RTL1A6NKG5 1358 aa38.89■■■■□ 3.82
LIG3-208ENST00000586407 IL2RBP14784 551 aa38.88■■■■□ 3.81
LIG3-208ENST00000586407 RREB1Q92766 1687 aa38.86■■■■□ 3.81
LIG3-208ENST00000586407 PSDA5PKW4 1024 aaPredicted RBP38.85■■■■□ 3.81
LIG3-208ENST00000586407 ANKRD26Q9UPS8 1709 aa38.84■■■■□ 3.81
LIG3-208ENST00000586407 CGNL1Q0VF96 1302 aa38.84■■■■□ 3.81
LIG3-208ENST00000586407 PANK3Q9H999 370 aa38.83■■■■□ 3.81
LIG3-208ENST00000586407 EMILIN1Q9Y6C2 1016 aa38.82■■■■□ 3.8
LIG3-208ENST00000586407 NUP188Q5SRE5 1749 aa38.82■■■■□ 3.8
LIG3-208ENST00000586407 HSP90AB2PQ58FF8 381 aa38.81■■■■□ 3.8
LIG3-208ENST00000586407 MAP2P11137 1827 aaKnown RBP38.81■■■■□ 3.8
LIG3-208ENST00000586407 USHBP1Q8N6Y0 703 aa38.78■■■■□ 3.8
LIG3-208ENST00000586407 BCL9O00512 1426 aa38.78■■■■□ 3.8
LIG3-208ENST00000586407 FLT4P35916 1363 aa38.77■■■■□ 3.8
LIG3-208ENST00000586407 NBPF6Q5VWK0 638 aa38.76■■■■□ 3.8
LIG3-208ENST00000586407 NBPF4Q96M43 638 aa38.76■■■■□ 3.8
LIG3-208ENST00000586407 KAT6BQ8WYB5 2073 aa38.75■■■■□ 3.79
LIG3-208ENST00000586407 INSRP06213 1382 aa38.75■■■■□ 3.79
LIG3-208ENST00000586407 PARD3Q8TEW0 1356 aa38.75■■■■□ 3.79
LIG3-208ENST00000586407 BCL11BQ9C0K0 894 aaPredicted RBP38.75■■■■□ 3.79
LIG3-208ENST00000586407 MEGF6O75095 1541 aa38.74■■■■□ 3.79
LIG3-208ENST00000586407 SMG6Q86US8 1419 aaKnown RBP38.73■■■■□ 3.79
LIG3-208ENST00000586407 SHANK3Q9BYB0 1731 aa38.73■■■■□ 3.79
LIG3-208ENST00000586407 PPM1GO15355 546 aaPredicted RBP38.73■■■■□ 3.79
LIG3-208ENST00000586407 TNNT2P45379 298 aaPredicted RBP38.73■■■■□ 3.79
LIG3-208ENST00000586407 R3HDM1Q15032 1099 aaKnown RBP38.73■■■■□ 3.79
LIG3-208ENST00000586407 ACSBG1Q96GR2 724 aa38.73■■■■□ 3.79
LIG3-208ENST00000586407 NHSQ6T4R5 1651 aa38.73■■■■□ 3.79
LIG3-208ENST00000586407 KIF7Q2M1P5 1343 aa38.72■■■■□ 3.79
LIG3-208ENST00000586407 KCNQ2O43526 872 aa38.71■■■■□ 3.79
LIG3-208ENST00000586407 RGPD3A6NKT7 1758 aaPredicted RBP38.71■■■■□ 3.79
LIG3-208ENST00000586407 RGPD4Q7Z3J3 1758 aa38.71■■■■□ 3.79
LIG3-208ENST00000586407 KIF24Q5T7B8 1368 aa38.7■■■■□ 3.78
LIG3-208ENST00000586407 DDX54Q8TDD1 881 aaKnown RBP38.69■■■■□ 3.78
LIG3-208ENST00000586407 POLKQ9UBT6 870 aa38.65■■■■□ 3.78
LIG3-208ENST00000586407 BTAF1O14981 1849 aa38.64■■■■□ 3.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms