RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 ATF5Q9Y2D1 282 aaPredicted RBP26.54■■□□□ 1.84
TOP3A-220ENST00000585031 DDB1Q16531 1140 aa26.53■■□□□ 1.84
TOP3A-220ENST00000585031 STAC3Q96MF2 364 aa26.53■■□□□ 1.84
TOP3A-220ENST00000585031 PPIP5K1Q6PFW1 1433 aa26.52■■□□□ 1.84
TOP3A-220ENST00000585031 RGPD5Q99666 1765 aa26.52■■□□□ 1.84
TOP3A-220ENST00000585031 FHDC1Q9C0D6 1143 aaPredicted RBP26.52■■□□□ 1.84
TOP3A-220ENST00000585031 AXIN2Q9Y2T1 843 aa26.52■■□□□ 1.84
TOP3A-220ENST00000585031 AATKQ6ZMQ8 1374 aa26.51■■□□□ 1.83
TOP3A-220ENST00000585031 AKAP12Q02952 1782 aa26.51■■□□□ 1.83
TOP3A-220ENST00000585031 SLIT3O75094 1523 aa26.5■■□□□ 1.83
TOP3A-220ENST00000585031 NBPF1Q3BBV0 1214 aa26.5■■□□□ 1.83
TOP3A-220ENST00000585031 SGIP1Q9BQI5 828 aa26.5■■□□□ 1.83
TOP3A-220ENST00000585031 CABP2Q9NPB3 220 aa26.49■■□□□ 1.83
TOP3A-220ENST00000585031 CHD4Q14839 1912 aa26.49■■□□□ 1.83
TOP3A-220ENST00000585031 BCL9O00512 1426 aa26.48■■□□□ 1.83
TOP3A-220ENST00000585031 NLRP6P59044 892 aa26.47■■□□□ 1.83
TOP3A-220ENST00000585031 SLC15A2Q16348 729 aa26.47■■□□□ 1.83
TOP3A-220ENST00000585031 TOM1L2Q6ZVM7 507 aa26.47■■□□□ 1.83
TOP3A-220ENST00000585031 KIAA1210Q9ULL0 1709 aa26.47■■□□□ 1.83
TOP3A-220ENST00000585031 PIK3C2AO00443 1686 aa26.47■■□□□ 1.83
TOP3A-220ENST00000585031 SRPK2P78362 688 aaKnown RBP26.45■■□□□ 1.82
TOP3A-220ENST00000585031 TXNRD1Q16881 649 aa26.45■■□□□ 1.82
TOP3A-220ENST00000585031 MTFR1LQ9H019 292 aa26.45■■□□□ 1.82
TOP3A-220ENST00000585031 STK32BQ9NY57 414 aa26.44■■□□□ 1.82
TOP3A-220ENST00000585031 USP6P35125 1406 aa26.44■■□□□ 1.82
TOP3A-220ENST00000585031 WDR17Q8IZU2 1322 aa26.43■■□□□ 1.82
TOP3A-220ENST00000585031 CABP1Q9NZU7 370 aa26.43■■□□□ 1.82
TOP3A-220ENST00000585031 CEP350Q5VT06 3117 aa26.42■■□□□ 1.82
TOP3A-220ENST00000585031 GOLGB1Q14789 3259 aaKnown RBP26.42■■□□□ 1.82
TOP3A-220ENST00000585031 CDCA7Q9BWT1 371 aaPredicted RBP26.4■■□□□ 1.82
TOP3A-220ENST00000585031 BRD4O60885 1362 aaPredicted RBP26.4■■□□□ 1.82
TOP3A-220ENST00000585031 QRICH2Q9H0J4 1663 aa26.38■■□□□ 1.81
TOP3A-220ENST00000585031 ARHGEF25Q86VW2 580 aa26.38■■□□□ 1.81
TOP3A-220ENST00000585031 ARXQ96QS3 562 aa26.37■■□□□ 1.81
TOP3A-220ENST00000585031 CPSF1Q10570 1443 aaKnown RBP26.37■■□□□ 1.81
TOP3A-220ENST00000585031 CENPJQ9HC77 1338 aaPredicted RBP26.37■■□□□ 1.81
TOP3A-220ENST00000585031 MAP3K5Q99683 1374 aa26.36■■□□□ 1.81
TOP3A-220ENST00000585031 CARD10Q9BWT7 1032 aa26.35■■□□□ 1.81
TOP3A-220ENST00000585031 PAPPAQ13219 1627 aa26.33■■□□□ 1.81
TOP3A-220ENST00000585031 NHSQ6T4R5 1651 aa26.32■■□□□ 1.8
TOP3A-220ENST00000585031 SOX12O15370 315 aa26.32■■□□□ 1.8
TOP3A-220ENST00000585031 EXOC5O00471 708 aa26.31■■□□□ 1.8
TOP3A-220ENST00000585031 ACSBG1Q96GR2 724 aa26.3■■□□□ 1.8
TOP3A-220ENST00000585031 TRPM1Q7Z4N2 1603 aa26.29■■□□□ 1.8
TOP3A-220ENST00000585031 TTC21BQ7Z4L5 1316 aa26.29■■□□□ 1.8
TOP3A-220ENST00000585031 KAT6BQ8WYB5 2073 aa26.29■■□□□ 1.8
TOP3A-220ENST00000585031 NFAT5O94916 1531 aa26.29■■□□□ 1.8
TOP3A-220ENST00000585031 GIGYF1O75420 1035 aaPredicted RBP26.28■■□□□ 1.8
TOP3A-220ENST00000585031 CSB-PGBD3P0DP91 1061 aa26.28■■□□□ 1.8
TOP3A-220ENST00000585031 GPR162Q16538 588 aa26.28■■□□□ 1.8
TOP3A-220ENST00000585031 BTAF1O14981 1849 aa26.28■■□□□ 1.8
TOP3A-220ENST00000585031 ZNF827Q17R98 1081 aa26.27■■□□□ 1.8
TOP3A-220ENST00000585031 TNS2Q63HR2 1409 aa26.27■■□□□ 1.8
TOP3A-220ENST00000585031 LRRC4BQ9NT99 713 aa26.24■■□□□ 1.79
TOP3A-220ENST00000585031 CCDC7Q96M83 1385 aa26.22■■□□□ 1.79
TOP3A-220ENST00000585031 KCNH5Q8NCM2 988 aa26.22■■□□□ 1.79
TOP3A-220ENST00000585031 ABCC6O95255 1503 aa26.2■■□□□ 1.79
TOP3A-220ENST00000585031 COL24A1Q17RW2 1714 aa26.2■■□□□ 1.79
TOP3A-220ENST00000585031 TUBGCP6Q96RT7 1819 aa26.18■■□□□ 1.78
TOP3A-220ENST00000585031 SLC16A10Q8TF71 515 aa26.18■■□□□ 1.78
TOP3A-220ENST00000585031 ZNF692Q9BU19 519 aaPredicted RBP26.17■■□□□ 1.78
TOP3A-220ENST00000585031 EVC2Q86UK5 1308 aa26.16■■□□□ 1.78
TOP3A-220ENST00000585031 AKT1S1Q96B36 256 aa26.16■■□□□ 1.78
TOP3A-220ENST00000585031 QSER1Q2KHR3 1735 aa26.16■■□□□ 1.78
TOP3A-220ENST00000585031 SHANK3Q9BYB0 1731 aa26.16■■□□□ 1.78
TOP3A-220ENST00000585031 TTC21AQ8NDW8 1320 aa26.15■■□□□ 1.78
TOP3A-220ENST00000585031 LTN1O94822 1766 aa26.15■■□□□ 1.78
TOP3A-220ENST00000585031 ERBB3P21860 1342 aa26.14■■□□□ 1.77
TOP3A-220ENST00000585031 NLRP2Q9NX02 1062 aa26.13■■□□□ 1.77
TOP3A-220ENST00000585031 MON2Q7Z3U7 1717 aa26.13■■□□□ 1.77
TOP3A-220ENST00000585031 NLGN2Q8NFZ4 835 aa26.12■■□□□ 1.77
TOP3A-220ENST00000585031 KTN1Q86UP2 1357 aaKnown RBP26.11■■□□□ 1.77
TOP3A-220ENST00000585031 KCNQ4P56696 695 aa26.11■■□□□ 1.77
TOP3A-220ENST00000585031 KLHL34Q8N239 644 aa26.11■■□□□ 1.77
TOP3A-220ENST00000585031 PNPLA7Q6ZV29 1317 aa26.11■■□□□ 1.77
TOP3A-220ENST00000585031 USP54Q70EL1 1684 aa26.1■■□□□ 1.77
TOP3A-220ENST00000585031 IL2RBP14784 551 aa26.1■■□□□ 1.77
TOP3A-220ENST00000585031 POLD1P28340 1107 aa26.1■■□□□ 1.77
TOP3A-220ENST00000585031 PELP1Q8IZL8 1130 aaKnown RBP26.09■■□□□ 1.77
TOP3A-220ENST00000585031 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.08■■□□□ 1.77
TOP3A-220ENST00000585031 L3MBTL2Q969R5 705 aa26.08■■□□□ 1.77
TOP3A-220ENST00000585031 USP31Q70CQ4 1352 aa26.07■■□□□ 1.76
TOP3A-220ENST00000585031 GRIN3BO60391 1043 aa26.07■■□□□ 1.76
TOP3A-220ENST00000585031 NME9Q86XW9 330 aa26.07■■□□□ 1.76
TOP3A-220ENST00000585031 YBX3P16989 372 aaKnown RBP eCLIP26.06■■□□□ 1.76
TOP3A-220ENST00000585031 SLC27A3Q5K4L6 730 aa26.06■■□□□ 1.76
TOP3A-220ENST00000585031 ANKRD24Q8TF21 1146 aa26.06■■□□□ 1.76
TOP3A-220ENST00000585031 CD163L1Q9NR16 1453 aa26.04■■□□□ 1.76
TOP3A-220ENST00000585031 LY75O60449 1722 aa26.02■■□□□ 1.76
TOP3A-220ENST00000585031 SBNO2Q9Y2G9 1366 aa26.02■■□□□ 1.76
TOP3A-220ENST00000585031 DDX54Q8TDD1 881 aaKnown RBP26.01■■□□□ 1.75
TOP3A-220ENST00000585031 TFCP2L1Q9NZI6 479 aa26■■□□□ 1.75
TOP3A-220ENST00000585031 DOT1LQ8TEK3 1739 aa25.99■■□□□ 1.75
TOP3A-220ENST00000585031 NSD2O96028 1365 aa25.98■■□□□ 1.75
TOP3A-220ENST00000585031 HSPA6P17066 643 aa25.97■■□□□ 1.75
TOP3A-220ENST00000585031 PRIM1P49642 420 aaKnown RBP25.97■■□□□ 1.75
TOP3A-220ENST00000585031 RGPD2P0DJD1 1756 aa25.97■■□□□ 1.75
TOP3A-220ENST00000585031 ATP10DQ9P241 1426 aa25.96■■□□□ 1.75
TOP3A-220ENST00000585031 ROCK2O75116 1388 aaKnown RBP25.95■■□□□ 1.74
TOP3A-220ENST00000585031 SIN3AQ96ST3 1273 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms