RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	GMPR	P36959	345 aa		7.34	□□□□□ -1.23
VAPA-208	ENST00000584796	C6orf118	Q5T5N4	469 aa		7.34	□□□□□ -1.23
VAPA-208	ENST00000584796	OCSTAMP	Q9BR26	566 aa		7.34	□□□□□ -1.23
VAPA-208	ENST00000584796	UPP2	O95045	317 aa		7.33	□□□□□ -1.24
VAPA-208	ENST00000584796	BMP2	P12643	396 aa		7.33	□□□□□ -1.24
VAPA-208	ENST00000584796	CDV3	Q9UKY7	258 aa	Known RBP	7.33	□□□□□ -1.24
VAPA-208	ENST00000584796	SLC24A1	O60721	1099 aa		7.32	□□□□□ -1.24
VAPA-208	ENST00000584796	AP1G2	O75843	785 aa		7.32	□□□□□ -1.24
VAPA-208	ENST00000584796	VSIG8	P0DPA2	414 aa		7.32	□□□□□ -1.24
VAPA-208	ENST00000584796	SLC10A4	Q96EP9	437 aa		7.32	□□□□□ -1.24
VAPA-208	ENST00000584796	GPSM3	Q9Y4H4	160 aa		7.32	□□□□□ -1.24
VAPA-208	ENST00000584796	SOS2	Q07890	1332 aa	Predicted RBP	7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	MAN1A2	O60476	641 aa		7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	USP17L8	P0C7I0	530 aa		7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	LOR	P23490	312 aa	Predicted RBP	7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	ZBTB33	Q86T24	672 aa		7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	KCTD15	Q96SI1	283 aa	Predicted RBP	7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	TSEN34	Q9BSV6	310 aa	Known RBP	7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	GOPC	Q9HD26	462 aa		7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	HMX1	Q9NP08	348 aa	Predicted RBP	7.31	□□□□□ -1.24
VAPA-208	ENST00000584796	RFC5	P40937	340 aa		7.3	□□□□□ -1.24
VAPA-208	ENST00000584796	PTK2	Q05397	1052 aa		7.3	□□□□□ -1.24
VAPA-208	ENST00000584796		Q6ZVU0	165 aa		7.3	□□□□□ -1.24
VAPA-208	ENST00000584796	EPS8L1	Q8TE68	723 aa		7.3	□□□□□ -1.24
VAPA-208	ENST00000584796	PGPEP1	Q9NXJ5	209 aa		7.3	□□□□□ -1.24
VAPA-208	ENST00000584796	DNMT3L	Q9UJW3	386 aa		7.3	□□□□□ -1.24
VAPA-208	ENST00000584796	ATP1B4	Q9UN42	357 aa	Predicted RBP	7.3	□□□□□ -1.24
VAPA-208	ENST00000584796	ADAM32	Q8TC27	787 aa		7.29	□□□□□ -1.24
VAPA-208	ENST00000584796	DHX9	Q08211	1270 aa	Known RBP	7.28	□□□□□ -1.24
VAPA-208	ENST00000584796	INTS6L	Q5JSJ4	861 aa	Known RBP	7.28	□□□□□ -1.24
VAPA-208	ENST00000584796	PNMA1	Q8ND90	353 aa		7.28	□□□□□ -1.24
VAPA-208	ENST00000584796	SPINT1	O43278	529 aa		7.27	□□□□□ -1.25
VAPA-208	ENST00000584796	CBLB	Q13191	982 aa		7.27	□□□□□ -1.25
VAPA-208	ENST00000584796	ZSCAN1	Q8NBB4	408 aa		7.27	□□□□□ -1.25
VAPA-208	ENST00000584796	TTLL8	A6PVC2	850 aa		7.26	□□□□□ -1.25
VAPA-208	ENST00000584796	PPFIA3	O75145	1194 aa		7.26	□□□□□ -1.25
VAPA-208	ENST00000584796	NBPF20	Q3BBV1	942 aa		7.26	□□□□□ -1.25
VAPA-208	ENST00000584796	TRIM34	Q9BYJ4	488 aa		7.26	□□□□□ -1.25
VAPA-208	ENST00000584796	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	7.25	□□□□□ -1.25
VAPA-208	ENST00000584796	PCMTD1	Q96MG8	357 aa	Predicted RBP	7.25	□□□□□ -1.25
VAPA-208	ENST00000584796	FAM181B	A6NEQ2	426 aa		7.24	□□□□□ -1.25
VAPA-208	ENST00000584796	TMEM259	Q4ZIN3	620 aa		7.24	□□□□□ -1.25
VAPA-208	ENST00000584796	ESPN	B1AK53	854 aa		7.23	□□□□□ -1.25
VAPA-208	ENST00000584796	PTS	Q03393	145 aa		7.22	□□□□□ -1.25
VAPA-208	ENST00000584796	NEUROD2	Q15784	382 aa		7.22	□□□□□ -1.25
VAPA-208	ENST00000584796	ZNF784	Q8NCA9	323 aa	Predicted RBP	7.22	□□□□□ -1.25
VAPA-208	ENST00000584796	AGBL1	Q96MI9	1066 aa		7.22	□□□□□ -1.25
VAPA-208	ENST00000584796	LILRA1	O75019	489 aa		7.21	□□□□□ -1.26
VAPA-208	ENST00000584796	DZIP3	Q86Y13	1208 aa	Known RBP	7.21	□□□□□ -1.26
VAPA-208	ENST00000584796	GJD4	Q96KN9	370 aa	Predicted RBP	7.21	□□□□□ -1.26
VAPA-208	ENST00000584796	TMPRSS4	Q9NRS4	437 aa		7.21	□□□□□ -1.26
VAPA-208	ENST00000584796	FIGNL2	A6NMB9	653 aa		7.2	□□□□□ -1.26
VAPA-208	ENST00000584796	ERVH48-1	M5A8F1	160 aa		7.2	□□□□□ -1.26
VAPA-208	ENST00000584796	RELB	Q01201	579 aa		7.2	□□□□□ -1.26
VAPA-208	ENST00000584796	SEPT12	Q8IYM1	358 aa		7.2	□□□□□ -1.26
VAPA-208	ENST00000584796	IL27	Q8NEV9	243 aa		7.2	□□□□□ -1.26
VAPA-208	ENST00000584796	ADH1A	P07327	375 aa		7.19	□□□□□ -1.26
VAPA-208	ENST00000584796	ADD1	P35611	737 aa	Known RBP	7.19	□□□□□ -1.26
VAPA-208	ENST00000584796	CTSO	P43234	321 aa	Predicted RBP	7.19	□□□□□ -1.26
VAPA-208	ENST00000584796	BRPF1	P55201	1214 aa	Predicted RBP	7.19	□□□□□ -1.26
VAPA-208	ENST00000584796	KDF1	Q8NAX2	398 aa	Predicted RBP	7.19	□□□□□ -1.26
VAPA-208	ENST00000584796	INSM2	Q96T92	566 aa	Predicted RBP	7.19	□□□□□ -1.26
VAPA-208	ENST00000584796	SLC35F4	A4IF30	521 aa		7.18	□□□□□ -1.26
VAPA-208	ENST00000584796	ZBBX	A8MT70	800 aa		7.18	□□□□□ -1.26
VAPA-208	ENST00000584796	RAB15	P59190	212 aa		7.18	□□□□□ -1.26
VAPA-208	ENST00000584796	CCDC155	Q8N6L0	562 aa		7.18	□□□□□ -1.26
VAPA-208	ENST00000584796	RNF217	Q8TC41	542 aa		7.18	□□□□□ -1.26
VAPA-208	ENST00000584796	NANOS1	Q8WY41	292 aa	Known RBP	7.18	□□□□□ -1.26
VAPA-208	ENST00000584796	SOCS7	O14512	581 aa		7.17	□□□□□ -1.26
VAPA-208	ENST00000584796	FBXO45	P0C2W1	286 aa		7.17	□□□□□ -1.26
VAPA-208	ENST00000584796	KRT76	Q01546	638 aa		7.17	□□□□□ -1.26
VAPA-208	ENST00000584796	GPR161	Q8N6U8	529 aa	Known RBP	7.17	□□□□□ -1.26
VAPA-208	ENST00000584796	ZNF395	Q9H8N7	513 aa	Predicted RBP	7.17	□□□□□ -1.26
VAPA-208	ENST00000584796	PTGIR	P43119	386 aa		7.16	□□□□□ -1.26
VAPA-208	ENST00000584796	POLM	Q9NP87	494 aa	Predicted RBP	7.16	□□□□□ -1.26
VAPA-208	ENST00000584796	SENP3-EIF4A1	A0A087X0R7	540 aa		7.15	□□□□□ -1.26
VAPA-208	ENST00000584796	GPR37L1	O60883	481 aa		7.15	□□□□□ -1.26
VAPA-208	ENST00000584796	ITGA6	P23229	1130 aa		7.15	□□□□□ -1.26
VAPA-208	ENST00000584796	FOXD4L5	Q5VV16	416 aa	Predicted RBP	7.15	□□□□□ -1.26
VAPA-208	ENST00000584796	BANK1	Q8NDB2	785 aa		7.15	□□□□□ -1.26
VAPA-208	ENST00000584796	GIGYF1	O75420	1035 aa	Predicted RBP	7.14	□□□□□ -1.27
VAPA-208	ENST00000584796	CCDC125	Q86Z20	511 aa		7.14	□□□□□ -1.27
VAPA-208	ENST00000584796	TRIM52	Q96A61	297 aa		7.14	□□□□□ -1.27
VAPA-208	ENST00000584796	CYLD	Q9NQC7	956 aa		7.14	□□□□□ -1.27
VAPA-208	ENST00000584796	PCDHB9	Q9Y5E1	797 aa		7.14	□□□□□ -1.27
VAPA-208	ENST00000584796	MTMR14	Q8NCE2	650 aa		7.13	□□□□□ -1.27
VAPA-208	ENST00000584796	NR1H3	Q13133	447 aa		7.12	□□□□□ -1.27
VAPA-208	ENST00000584796	CNTNAP3B	Q96NU0	1288 aa		7.12	□□□□□ -1.27
VAPA-208	ENST00000584796	COL25A1	Q9BXS0	654 aa	Predicted RBP	7.12	□□□□□ -1.27
VAPA-208	ENST00000584796	CNTNAP3	Q9BZ76	1288 aa		7.12	□□□□□ -1.27
VAPA-208	ENST00000584796	RNF144A	P50876	292 aa	Predicted RBP	7.11	□□□□□ -1.27
VAPA-208	ENST00000584796	MCCD1	P59942	119 aa	Predicted RBP	7.11	□□□□□ -1.27
VAPA-208	ENST00000584796	ERVK-9	P63128	1117 aa		7.11	□□□□□ -1.27
VAPA-208	ENST00000584796	RNFT1	Q5M7Z0	435 aa		7.11	□□□□□ -1.27
VAPA-208	ENST00000584796	LYSMD3	Q7Z3D4	306 aa		7.11	□□□□□ -1.27
VAPA-208	ENST00000584796	ATP5J2-PTCD1	G3V325	749 aa		7.1	□□□□□ -1.27
VAPA-208	ENST00000584796	RNF20	Q5VTR2	975 aa		7.1	□□□□□ -1.27
VAPA-208	ENST00000584796	VWA5B2	Q8N398	1253 aa		7.1	□□□□□ -1.27
VAPA-208	ENST00000584796	ZNF592	Q92610	1267 aa		7.1	□□□□□ -1.27

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