RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 IP6K1Q92551 441 aa14.75□□□□□ -0.05
TOP3A-216ENST00000583804 HOXC9P31274 260 aa14.74□□□□□ -0.05
TOP3A-216ENST00000583804 EVA1CP58658 441 aa14.74□□□□□ -0.05
TOP3A-216ENST00000583804 HSP90AB2PQ58FF8 381 aa14.74□□□□□ -0.05
TOP3A-216ENST00000583804 LTV1Q96GA3 475 aaPredicted RBP14.74□□□□□ -0.05
TOP3A-216ENST00000583804 YTHDC1Q96MU7 727 aaKnown RBP14.74□□□□□ -0.05
TOP3A-216ENST00000583804 BTG4Q9NY30 223 aa14.74□□□□□ -0.05
TOP3A-216ENST00000583804 AXIN2Q9Y2T1 843 aa14.74□□□□□ -0.05
TOP3A-216ENST00000583804 MAP2P11137 1827 aaKnown RBP14.73□□□□□ -0.05
TOP3A-216ENST00000583804 FLT4P35916 1363 aa14.72□□□□□ -0.05
TOP3A-216ENST00000583804 LTN1O94822 1766 aa14.72□□□□□ -0.05
TOP3A-216ENST00000583804 CFAP53Q96M91 514 aa14.72□□□□□ -0.05
TOP3A-216ENST00000583804 MRS2Q9HD23 443 aa14.72□□□□□ -0.05
TOP3A-216ENST00000583804 STRN4Q9NRL3 753 aa14.72□□□□□ -0.05
TOP3A-216ENST00000583804 KIF24Q5T7B8 1368 aa14.72□□□□□ -0.05
TOP3A-216ENST00000583804 CSB-PGBD3P0DP91 1061 aa14.71□□□□□ -0.05
TOP3A-216ENST00000583804 RTL1A6NKG5 1358 aa14.71□□□□□ -0.05
TOP3A-216ENST00000583804 ANKRD24Q8TF21 1146 aa14.7□□□□□ -0.06
TOP3A-216ENST00000583804 INSRP06213 1382 aa14.7□□□□□ -0.06
TOP3A-216ENST00000583804 AFF2P51816 1311 aa14.7□□□□□ -0.06
TOP3A-216ENST00000583804 COL14A1Q05707 1796 aaKnown RBP14.7□□□□□ -0.06
TOP3A-216ENST00000583804 SMG6Q86US8 1419 aaKnown RBP14.69□□□□□ -0.06
TOP3A-216ENST00000583804 FNBP4Q8N3X1 1017 aaPredicted RBP14.69□□□□□ -0.06
TOP3A-216ENST00000583804 USP21Q9UK80 565 aa14.69□□□□□ -0.06
TOP3A-216ENST00000583804 CAMTA1Q9Y6Y1 1673 aa14.69□□□□□ -0.06
TOP3A-216ENST00000583804 PEAK1Q9H792 1746 aa14.69□□□□□ -0.06
TOP3A-216ENST00000583804 BLMP54132 1417 aaPredicted RBP14.69□□□□□ -0.06
TOP3A-216ENST00000583804 CCER2I3L3R5 266 aa14.69□□□□□ -0.06
TOP3A-216ENST00000583804 CDK12Q9NYV4 1490 aaPredicted RBP14.68□□□□□ -0.06
TOP3A-216ENST00000583804 DIAPH1O60610 1272 aaKnown RBP14.68□□□□□ -0.06
TOP3A-216ENST00000583804 EIF4A2Q14240 407 aaKnown RBP14.68□□□□□ -0.06
TOP3A-216ENST00000583804 UNC5CLQ8IV45 518 aa14.68□□□□□ -0.06
TOP3A-216ENST00000583804 COL18A1P39060 1754 aa14.67□□□□□ -0.06
TOP3A-216ENST00000583804 LARP1Q6PKG0 1096 aaKnown RBP14.67□□□□□ -0.06
TOP3A-216ENST00000583804 TOM1L2Q6ZVM7 507 aa14.67□□□□□ -0.06
TOP3A-216ENST00000583804 NLRP2Q9NX02 1062 aa14.67□□□□□ -0.06
TOP3A-216ENST00000583804 CCDC9Q9Y3X0 531 aaKnown RBP14.67□□□□□ -0.06
TOP3A-216ENST00000583804 ERBB3P21860 1342 aa14.66□□□□□ -0.06
TOP3A-216ENST00000583804 SLIT2O94813 1529 aa14.66□□□□□ -0.06
TOP3A-216ENST00000583804 ABCC6O95255 1503 aa14.66□□□□□ -0.06
TOP3A-216ENST00000583804 FAM9BQ8IZU0 186 aa14.66□□□□□ -0.06
TOP3A-216ENST00000583804 COL5A2P05997 1499 aaPredicted RBP14.66□□□□□ -0.06
TOP3A-216ENST00000583804 LMO7Q8WWI1 1683 aa14.66□□□□□ -0.06
TOP3A-216ENST00000583804 WDR17Q8IZU2 1322 aa14.66□□□□□ -0.06
TOP3A-216ENST00000583804 RGPD5Q99666 1765 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 PLCH1Q4KWH8 1693 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 SENP3-EIF4A1A0A087X0R7 540 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 U2SURPO15042 1029 aaKnown RBP14.65□□□□□ -0.06
TOP3A-216ENST00000583804 ADRA2BP18089 450 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 IL13P35225 146 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 USP35Q9P2H5 1018 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 NUDCQ9Y266 331 aa14.65□□□□□ -0.06
TOP3A-216ENST00000583804 BCL9LQ86UU0 1499 aa14.65□□□□□ -0.07
TOP3A-216ENST00000583804 ZNF772Q68DY9 489 aaPredicted RBP14.64□□□□□ -0.07
TOP3A-216ENST00000583804 NBPF6Q5VWK0 638 aa14.63□□□□□ -0.07
TOP3A-216ENST00000583804 NBPF4Q96M43 638 aa14.63□□□□□ -0.07
TOP3A-216ENST00000583804 VPS72Q15906 364 aa14.63□□□□□ -0.07
TOP3A-216ENST00000583804 USHBP1Q8N6Y0 703 aa14.63□□□□□ -0.07
TOP3A-216ENST00000583804 EYA1Q99502 592 aa14.63□□□□□ -0.07
TOP3A-216ENST00000583804 QTRT2Q9H974 415 aaKnown RBP14.63□□□□□ -0.07
TOP3A-216ENST00000583804 TRPC5Q9UL62 973 aaPredicted RBP14.63□□□□□ -0.07
TOP3A-216ENST00000583804 NWD2Q9ULI1 1742 aa14.62□□□□□ -0.07
TOP3A-216ENST00000583804 U2AF1L5P0DN76 240 aaPredicted RBP14.62□□□□□ -0.07
TOP3A-216ENST00000583804 U2AF1Q01081 240 aaKnown RBP eCLIP14.62□□□□□ -0.07
TOP3A-216ENST00000583804 CARD10Q9BWT7 1032 aa14.62□□□□□ -0.07
TOP3A-216ENST00000583804 COL3A1P02461 1466 aaPredicted RBP14.62□□□□□ -0.07
TOP3A-216ENST00000583804 CRB1P82279 1406 aa14.61□□□□□ -0.07
TOP3A-216ENST00000583804 WDR43Q15061 677 aaKnown RBP eCLIP14.61□□□□□ -0.07
TOP3A-216ENST00000583804 CENPBP07199 599 aaPredicted RBP14.6□□□□□ -0.07
TOP3A-216ENST00000583804 HMOX1P09601 288 aa14.6□□□□□ -0.07
TOP3A-216ENST00000583804 SULT6B1Q6IMI4 303 aa14.6□□□□□ -0.07
TOP3A-216ENST00000583804 NRAPQ86VF7 1730 aa14.6□□□□□ -0.07
TOP3A-216ENST00000583804 SPATA31A5Q5VU36 1347 aa14.6□□□□□ -0.07
TOP3A-216ENST00000583804 SPATA31A7Q8IWB4 1347 aa14.6□□□□□ -0.07
TOP3A-216ENST00000583804 TCP11L2Q8N4U5 519 aa14.59□□□□□ -0.07
TOP3A-216ENST00000583804 GJD4Q96KN9 370 aaPredicted RBP14.59□□□□□ -0.07
TOP3A-216ENST00000583804 SPATA31A1Q5TZJ5 1347 aa14.59□□□□□ -0.07
TOP3A-216ENST00000583804 AEBP1Q8IUX7 1158 aa14.58□□□□□ -0.08
TOP3A-216ENST00000583804 RGS17Q9UGC6 210 aaPredicted RBP14.58□□□□□ -0.08
TOP3A-216ENST00000583804 IGSF1Q8N6C5 1336 aa14.58□□□□□ -0.08
TOP3A-216ENST00000583804 ATRNO75882 1429 aa14.58□□□□□ -0.08
TOP3A-216ENST00000583804 PNISRQ8TF01 805 aaKnown RBP14.57□□□□□ -0.08
TOP3A-216ENST00000583804 FAM98CQ17RN3 349 aaKnown RBP14.57□□□□□ -0.08
TOP3A-216ENST00000583804 RAPGEF4Q8WZA2 1011 aa14.57□□□□□ -0.08
TOP3A-216ENST00000583804 RGPD2P0DJD1 1756 aa14.56□□□□□ -0.08
TOP3A-216ENST00000583804 A0A0G2JS52 829 aa14.56□□□□□ -0.08
TOP3A-216ENST00000583804 MYT1Q01538 1121 aa14.56□□□□□ -0.08
TOP3A-216ENST00000583804 ADAMTS8Q9UP79 889 aa14.56□□□□□ -0.08
TOP3A-216ENST00000583804 THRAP3Q9Y2W1 955 aaKnown RBP14.56□□□□□ -0.08
TOP3A-216ENST00000583804 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.55□□□□□ -0.08
TOP3A-216ENST00000583804 IL2RBP14784 551 aa14.55□□□□□ -0.08
TOP3A-216ENST00000583804 TATP17735 454 aaPredicted RBP14.55□□□□□ -0.08
TOP3A-216ENST00000583804 RXRBP28702 533 aa14.55□□□□□ -0.08
TOP3A-216ENST00000583804 RBM6P78332 1123 aaKnown RBP14.55□□□□□ -0.08
TOP3A-216ENST00000583804 POTEAQ6S8J7 498 aa14.55□□□□□ -0.08
TOP3A-216ENST00000583804 FAM208AQ9UK61 1670 aaKnown RBP14.55□□□□□ -0.08
TOP3A-216ENST00000583804 FCHSD2O94868 740 aa14.53□□□□□ -0.08
TOP3A-216ENST00000583804 PRKAR2BP31323 418 aa14.53□□□□□ -0.08
TOP3A-216ENST00000583804 BARGINQ6ZT62 677 aa14.53□□□□□ -0.08
TOP3A-216ENST00000583804 CCDC146Q8IYE0 955 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms