RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 GRM5P41594 1212 aa8.35□□□□□ -1.07
SS18-223ENST00000583595 AEBP1Q8IUX7 1158 aa8.35□□□□□ -1.07
SS18-223ENST00000583595 KCTD17Q8N5Z5 321 aa8.35□□□□□ -1.07
SS18-223ENST00000583595 ARHGAP9Q9BRR9 750 aa8.35□□□□□ -1.07
SS18-223ENST00000583595 ZC3H4Q9UPT8 1303 aaKnown RBP8.34□□□□□ -1.07
SS18-223ENST00000583595 WDR4P57081 412 aaKnown RBP8.34□□□□□ -1.07
SS18-223ENST00000583595 NR5A1Q13285 461 aa8.34□□□□□ -1.07
SS18-223ENST00000583595 TRMT44Q8IYL2 757 aaKnown RBP8.34□□□□□ -1.07
SS18-223ENST00000583595 SERPINA10Q9UK55 444 aa8.34□□□□□ -1.07
SS18-223ENST00000583595 BMP1P13497 986 aa8.33□□□□□ -1.08
SS18-223ENST00000583595 ERFEQ4G0M1 354 aa8.33□□□□□ -1.08
SS18-223ENST00000583595 VASH1Q7L8A9 365 aaPredicted RBP8.33□□□□□ -1.08
SS18-223ENST00000583595 PNMA1Q8ND90 353 aa8.33□□□□□ -1.08
SS18-223ENST00000583595 CCDC97Q96F63 343 aaPredicted RBP8.33□□□□□ -1.08
SS18-223ENST00000583595 SENP2Q9HC62 589 aa8.33□□□□□ -1.08
SS18-223ENST00000583595 RAD21O60216 631 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 NR3C2P08235 984 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 SNRPBP14678 240 aaKnown RBP8.32□□□□□ -1.08
SS18-223ENST00000583595 TIMP2P16035 220 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 PTK2Q05397 1052 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 TRIM46Q7Z4K8 759 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 ZBTB33Q86T24 672 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 KLF16Q9BXK1 252 aaPredicted RBP8.32□□□□□ -1.08
SS18-223ENST00000583595 MAP4K5Q9Y4K4 846 aa8.32□□□□□ -1.08
SS18-223ENST00000583595 TRIM47Q96LD4 638 aa8.31□□□□□ -1.08
SS18-223ENST00000583595 OCSTAMPQ9BR26 566 aa8.31□□□□□ -1.08
SS18-223ENST00000583595 TRIM34Q9BYJ4 488 aa8.31□□□□□ -1.08
SS18-223ENST00000583595 ZIC2O95409 532 aaPredicted RBP8.3□□□□□ -1.08
SS18-223ENST00000583595 FSHRP23945 695 aa8.3□□□□□ -1.08
SS18-223ENST00000583595 KIFC2Q96AC6 838 aa8.3□□□□□ -1.08
SS18-223ENST00000583595 ZFAND3Q9H8U3 227 aa8.3□□□□□ -1.08
SS18-223ENST00000583595 GPSM3Q9Y4H4 160 aa8.3□□□□□ -1.08
SS18-223ENST00000583595 ITPKCQ96DU7 683 aa8.29□□□□□ -1.08
SS18-223ENST00000583595 SLC10A4Q96EP9 437 aa8.29□□□□□ -1.08
SS18-223ENST00000583595 COG6Q9Y2V7 657 aa8.29□□□□□ -1.08
SS18-223ENST00000583595 ADAM32Q8TC27 787 aa8.28□□□□□ -1.08
SS18-223ENST00000583595 SNRKQ9NRH2 765 aa8.28□□□□□ -1.08
SS18-223ENST00000583595 MRPL14Q6P1L8 145 aaKnown RBP8.27□□□□□ -1.09
SS18-223ENST00000583595 BANK1Q8NDB2 785 aa8.27□□□□□ -1.09
SS18-223ENST00000583595 GJD4Q96KN9 370 aaPredicted RBP8.27□□□□□ -1.09
SS18-223ENST00000583595 CDV3Q9UKY7 258 aaKnown RBP8.27□□□□□ -1.09
SS18-223ENST00000583595 ZNF330Q9Y3S2 320 aaPredicted RBP8.27□□□□□ -1.09
SS18-223ENST00000583595 SCARF1Q14162 830 aa8.26□□□□□ -1.09
SS18-223ENST00000583595 CCDC116Q8IYX3 515 aa8.26□□□□□ -1.09
SS18-223ENST00000583595 RETREG2Q8NC44 543 aa8.26□□□□□ -1.09
SS18-223ENST00000583595 ZFP42Q96MM3 310 aa8.26□□□□□ -1.09
SS18-223ENST00000583595 KCTD15Q96SI1 283 aaPredicted RBP8.26□□□□□ -1.09
SS18-223ENST00000583595 IRF5Q13568 498 aa8.25□□□□□ -1.09
SS18-223ENST00000583595 PURBQ96QR8 312 aaKnown RBP8.25□□□□□ -1.09
SS18-223ENST00000583595 GZF1Q9H116 711 aaPredicted RBP8.25□□□□□ -1.09
SS18-223ENST00000583595 EMILIN1Q9Y6C2 1016 aa8.25□□□□□ -1.09
SS18-223ENST00000583595 PPP1R26Q5T8A7 1209 aaPredicted RBP8.23□□□□□ -1.09
SS18-223ENST00000583595 DZIP3Q86Y13 1208 aaKnown RBP8.23□□□□□ -1.09
SS18-223ENST00000583595 RGS22Q8NE09 1264 aa8.23□□□□□ -1.09
SS18-223ENST00000583595 INTS6LQ5JSJ4 861 aaKnown RBP8.22□□□□□ -1.09
SS18-223ENST00000583595 C6orf118Q5T5N4 469 aa8.22□□□□□ -1.09
SS18-223ENST00000583595 TREML4Q6UXN2 200 aa8.22□□□□□ -1.09
SS18-223ENST00000583595 MTMR14Q8NCE2 650 aa8.22□□□□□ -1.09
SS18-223ENST00000583595 PGPEP1Q9NXJ5 209 aa8.22□□□□□ -1.09
SS18-223ENST00000583595 MTMR7Q9Y216 660 aa8.22□□□□□ -1.09
SS18-223ENST00000583595 ZBBXA8MT70 800 aa8.21□□□□□ -1.1
SS18-223ENST00000583595 UPP2O95045 317 aa8.21□□□□□ -1.1
SS18-223ENST00000583595 FBXO45P0C2W1 286 aa8.21□□□□□ -1.1
SS18-223ENST00000583595 DHX9Q08211 1270 aaKnown RBP8.21□□□□□ -1.1
SS18-223ENST00000583595 NBPF20Q3BBV1 942 aa8.21□□□□□ -1.1
SS18-223ENST00000583595 MEIOBQ8N635 442 aa8.21□□□□□ -1.1
SS18-223ENST00000583595 SOCS7O14512 581 aa8.2□□□□□ -1.1
SS18-223ENST00000583595 BMP2P12643 396 aa8.2□□□□□ -1.1
SS18-223ENST00000583595 RAB15P59190 212 aa8.2□□□□□ -1.1
SS18-223ENST00000583595 WFS1O76024 890 aa8.19□□□□□ -1.1
SS18-223ENST00000583595 CBLBQ13191 982 aa8.19□□□□□ -1.1
SS18-223ENST00000583595 TMCO4Q5TGY1 634 aa8.19□□□□□ -1.1
SS18-223ENST00000583595 LINC00528Q8N1L1 170 aa8.19□□□□□ -1.1
SS18-223ENST00000583595 TERTO14746 1132 aaKnown RBP8.18□□□□□ -1.1
SS18-223ENST00000583595 NFX1Q12986 1120 aaKnown RBP8.18□□□□□ -1.1
SS18-223ENST00000583595 LCE2AQ5TA79 106 aaPredicted RBP8.18□□□□□ -1.1
SS18-223ENST00000583595 TSEN34Q9BSV6 310 aaKnown RBP8.18□□□□□ -1.1
SS18-223ENST00000583595 GDPD2Q9HCC8 539 aa8.18□□□□□ -1.1
SS18-223ENST00000583595 PCDHB9Q9Y5E1 797 aa8.18□□□□□ -1.1
SS18-223ENST00000583595 NDUFB9Q9Y6M9 179 aa8.18□□□□□ -1.1
SS18-223ENST00000583595 ACIN1Q9UKV3 1341 aaKnown RBP8.18□□□□□ -1.1
SS18-223ENST00000583595 SOBPA7XYQ1 873 aa8.17□□□□□ -1.1
SS18-223ENST00000583595 ESPNB1AK53 854 aa8.17□□□□□ -1.1
SS18-223ENST00000583595 MFAP1P55081 439 aaKnown RBP8.17□□□□□ -1.1
SS18-223ENST00000583595 FOXD4L5Q5VV16 416 aaPredicted RBP8.17□□□□□ -1.1
SS18-223ENST00000583595 Q6ZVU0 165 aa8.17□□□□□ -1.1
SS18-223ENST00000583595 FOXD4L4Q8WXT5 416 aaPredicted RBP8.17□□□□□ -1.1
SS18-223ENST00000583595 ZNF428Q96B54 188 aa8.17□□□□□ -1.1
SS18-223ENST00000583595 TMPRSS4Q9NRS4 437 aa8.17□□□□□ -1.1
SS18-223ENST00000583595 ERVH48-1M5A8F1 160 aa8.16□□□□□ -1.1
SS18-223ENST00000583595 GPR37L1O60883 481 aa8.16□□□□□ -1.1
SS18-223ENST00000583595 NR1H3Q13133 447 aa8.16□□□□□ -1.1
SS18-223ENST00000583595 NXF1Q9UBU9 619 aaKnown RBP8.16□□□□□ -1.1
SS18-223ENST00000583595 MAN1A2O60476 641 aa8.15□□□□□ -1.1
SS18-223ENST00000583595 CALR3Q96L12 384 aaKnown RBP8.15□□□□□ -1.1
SS18-223ENST00000583595 POM121CA8CG34 1229 aa8.14□□□□□ -1.11
SS18-223ENST00000583595 GIGYF1O75420 1035 aaPredicted RBP8.14□□□□□ -1.11
SS18-223ENST00000583595 PPP1R15AO75807 674 aaPredicted RBP8.14□□□□□ -1.11
SS18-223ENST00000583595 SEPT12Q8IYM1 358 aa8.14□□□□□ -1.11
SS18-223ENST00000583595 ZNF784Q8NCA9 323 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms