RNA–Protein interactions for RNA: ENST00000582955.5

SMARCE1-218, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 621 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-218ENST00000582955 USP35Q9P2H5 1018 aa17.45■□□□□ 0.38
SMARCE1-218ENST00000582955 SPATA31A1Q5TZJ5 1347 aa17.45■□□□□ 0.38
SMARCE1-218ENST00000582955 NSD3Q9BZ95 1437 aa17.44■□□□□ 0.38
SMARCE1-218ENST00000582955 COL18A1P39060 1754 aa17.43■□□□□ 0.38
SMARCE1-218ENST00000582955 CARD14Q9BXL6 1004 aa17.43■□□□□ 0.38
SMARCE1-218ENST00000582955 GGNBP2Q9H3C7 697 aa17.43■□□□□ 0.38
SMARCE1-218ENST00000582955 C11orf95C9JLR9 678 aaPredicted RBP17.42■□□□□ 0.38
SMARCE1-218ENST00000582955 FYB1O15117 783 aa17.42■□□□□ 0.38
SMARCE1-218ENST00000582955 ONECUT3O60422 494 aaPredicted RBP17.42■□□□□ 0.38
SMARCE1-218ENST00000582955 AXIN2Q9Y2T1 843 aa17.42■□□□□ 0.38
SMARCE1-218ENST00000582955 KIF20BQ96Q89 1820 aa17.42■□□□□ 0.38
SMARCE1-218ENST00000582955 UPF1Q92900 1129 aaKnown RBP eCLIP17.41■□□□□ 0.38
SMARCE1-218ENST00000582955 LTN1O94822 1766 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 BRWD3Q6RI45 1802 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 CRB1P82279 1406 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 CSB-PGBD3P0DP91 1061 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 TOM1L2Q6ZVM7 507 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 ABCC6O95255 1503 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 RGPD5Q99666 1765 aa17.4■□□□□ 0.38
SMARCE1-218ENST00000582955 KRT27Q7Z3Y8 459 aa17.39■□□□□ 0.37
SMARCE1-218ENST00000582955 TCP11L2Q8N4U5 519 aa17.39■□□□□ 0.37
SMARCE1-218ENST00000582955 WDR17Q8IZU2 1322 aa17.39■□□□□ 0.37
SMARCE1-218ENST00000582955 PANK3Q9H999 370 aa17.38■□□□□ 0.37
SMARCE1-218ENST00000582955 THSD7AQ9UPZ6 1657 aa17.38■□□□□ 0.37
SMARCE1-218ENST00000582955 FBLN1P23142 703 aa17.37■□□□□ 0.37
SMARCE1-218ENST00000582955 BARGINQ6ZT62 677 aa17.37■□□□□ 0.37
SMARCE1-218ENST00000582955 CGNL1Q0VF96 1302 aa17.37■□□□□ 0.37
SMARCE1-218ENST00000582955 KIF7Q2M1P5 1343 aa17.37■□□□□ 0.37
SMARCE1-218ENST00000582955 THRAP3Q9Y2W1 955 aaKnown RBP17.36■□□□□ 0.37
SMARCE1-218ENST00000582955 AMPHP49418 695 aa17.35■□□□□ 0.37
SMARCE1-218ENST00000582955 MAP3K19Q56UN5 1328 aa17.35■□□□□ 0.37
SMARCE1-218ENST00000582955 ERBB3P21860 1342 aa17.34■□□□□ 0.37
SMARCE1-218ENST00000582955 BLMP54132 1417 aaPredicted RBP17.34■□□□□ 0.37
SMARCE1-218ENST00000582955 RRS1Q15050 365 aaKnown RBP17.34■□□□□ 0.37
SMARCE1-218ENST00000582955 ANKRD24Q8TF21 1146 aa17.34■□□□□ 0.37
SMARCE1-218ENST00000582955 IP6K1Q92551 441 aa17.34■□□□□ 0.37
SMARCE1-218ENST00000582955 CARD10Q9BWT7 1032 aa17.33■□□□□ 0.36
SMARCE1-218ENST00000582955 HOXC9P31274 260 aa17.32■□□□□ 0.36
SMARCE1-218ENST00000582955 FAM182BQ5T319 152 aa17.32■□□□□ 0.36
SMARCE1-218ENST00000582955 LTV1Q96GA3 475 aaPredicted RBP17.32■□□□□ 0.36
SMARCE1-218ENST00000582955 NLRP2Q9NX02 1062 aa17.32■□□□□ 0.36
SMARCE1-218ENST00000582955 EP400Q96L91 3159 aa17.32■□□□□ 0.36
SMARCE1-218ENST00000582955 PDE3BQ13370 1112 aa17.31■□□□□ 0.36
SMARCE1-218ENST00000582955 RTL1A6NKG5 1358 aa17.3■□□□□ 0.36
SMARCE1-218ENST00000582955 CCDC7Q96M83 1385 aa17.3■□□□□ 0.36
SMARCE1-218ENST00000582955 MAPK8IP2Q13387 824 aaPredicted RBP17.29■□□□□ 0.36
SMARCE1-218ENST00000582955 KNSTRNQ9Y448 316 aa17.29■□□□□ 0.36
SMARCE1-218ENST00000582955 PARP4Q9UKK3 1724 aaKnown RBP17.29■□□□□ 0.36
SMARCE1-218ENST00000582955 WNK3Q9BYP7 1800 aa17.28■□□□□ 0.36
SMARCE1-218ENST00000582955 WASHC2AQ641Q2 1341 aa17.28■□□□□ 0.36
SMARCE1-218ENST00000582955 ANKRD26Q9UPS8 1709 aa17.28■□□□□ 0.36
SMARCE1-218ENST00000582955 TNNT2P45379 298 aaPredicted RBP17.28■□□□□ 0.36
SMARCE1-218ENST00000582955 CCDC125Q86Z20 511 aa17.28■□□□□ 0.36
SMARCE1-218ENST00000582955 CDCA7Q9BWT1 371 aaPredicted RBP17.28■□□□□ 0.36
SMARCE1-218ENST00000582955 PPM1GO15355 546 aaPredicted RBP17.27■□□□□ 0.36
SMARCE1-218ENST00000582955 CACNB1Q02641 598 aaPredicted RBP17.27■□□□□ 0.36
SMARCE1-218ENST00000582955 SF3B2Q13435 895 aaKnown RBP17.27■□□□□ 0.36
SMARCE1-218ENST00000582955 DDB1Q16531 1140 aa17.27■□□□□ 0.36
SMARCE1-218ENST00000582955 LRRC37A3O60309 1634 aa17.27■□□□□ 0.36
SMARCE1-218ENST00000582955 NSD2O96028 1365 aa17.27■□□□□ 0.35
SMARCE1-218ENST00000582955 FLT4P35916 1363 aa17.27■□□□□ 0.35
SMARCE1-218ENST00000582955 EMILIN1Q9Y6C2 1016 aa17.26■□□□□ 0.35
SMARCE1-218ENST00000582955 SMG6Q86US8 1419 aaKnown RBP17.26■□□□□ 0.35
SMARCE1-218ENST00000582955 FAM208AQ9UK61 1670 aaKnown RBP17.26■□□□□ 0.35
SMARCE1-218ENST00000582955 PEAK1Q9H792 1746 aa17.25■□□□□ 0.35
SMARCE1-218ENST00000582955 DISP2A7MBM2 1401 aa17.25■□□□□ 0.35
SMARCE1-218ENST00000582955 KIF24Q5T7B8 1368 aa17.25■□□□□ 0.35
SMARCE1-218ENST00000582955 HSP90AB2PQ58FF8 381 aa17.24■□□□□ 0.35
SMARCE1-218ENST00000582955 FAM196AQ6ZSG2 479 aa17.24■□□□□ 0.35
SMARCE1-218ENST00000582955 MORC1Q86VD1 984 aa17.24■□□□□ 0.35
SMARCE1-218ENST00000582955 INSRP06213 1382 aa17.24■□□□□ 0.35
SMARCE1-218ENST00000582955 IL2RBP14784 551 aa17.23■□□□□ 0.35
SMARCE1-218ENST00000582955 EXOC5O00471 708 aa17.22■□□□□ 0.35
SMARCE1-218ENST00000582955 MAP2P11137 1827 aaKnown RBP17.21■□□□□ 0.35
SMARCE1-218ENST00000582955 AMER1Q5JTC6 1135 aaPredicted RBP17.21■□□□□ 0.35
SMARCE1-218ENST00000582955 POLKQ9UBT6 870 aa17.21■□□□□ 0.35
SMARCE1-218ENST00000582955 OVOS2A0A0G2JMS6 1433 aa17.21■□□□□ 0.34
SMARCE1-218ENST00000582955 TNS2Q63HR2 1409 aa17.21■□□□□ 0.34
SMARCE1-218ENST00000582955 RGPD2P0DJD1 1756 aa17.2■□□□□ 0.34
SMARCE1-218ENST00000582955 TRIM37O94972 964 aa17.2■□□□□ 0.34
SMARCE1-218ENST00000582955 DEFB132Q7Z7B7 95 aa17.2■□□□□ 0.34
SMARCE1-218ENST00000582955 RGPD1P0DJD0 1748 aa17.2■□□□□ 0.34
SMARCE1-218ENST00000582955 PER1O15534 1290 aaPredicted RBP17.19■□□□□ 0.34
SMARCE1-218ENST00000582955 CNGB1Q14028 1251 aaPredicted RBP17.19■□□□□ 0.34
SMARCE1-218ENST00000582955 NBPF6Q5VWK0 638 aa17.19■□□□□ 0.34
SMARCE1-218ENST00000582955 USHBP1Q8N6Y0 703 aa17.19■□□□□ 0.34
SMARCE1-218ENST00000582955 NBPF4Q96M43 638 aa17.19■□□□□ 0.34
SMARCE1-218ENST00000582955 BAG6P46379 1132 aa17.18■□□□□ 0.34
SMARCE1-218ENST00000582955 CC2D1BQ5T0F9 858 aaKnown RBP17.18■□□□□ 0.34
SMARCE1-218ENST00000582955 MARCH10Q8NA82 808 aaPredicted RBP17.18■□□□□ 0.34
SMARCE1-218ENST00000582955 TNS1Q9HBL0 1735 aaKnown RBP17.16■□□□□ 0.34
SMARCE1-218ENST00000582955 ZEB1P37275 1124 aaPredicted RBP17.15■□□□□ 0.34
SMARCE1-218ENST00000582955 RAPGEF4Q8WZA2 1011 aa17.15■□□□□ 0.34
SMARCE1-218ENST00000582955 MEGF6O75095 1541 aa17.15■□□□□ 0.34
SMARCE1-218ENST00000582955 APBA3O96018 575 aa17.14■□□□□ 0.33
SMARCE1-218ENST00000582955 EN1Q05925 392 aaPredicted RBP17.14■□□□□ 0.33
SMARCE1-218ENST00000582955 TATP17735 454 aaPredicted RBP17.13■□□□□ 0.33
SMARCE1-218ENST00000582955 EIF4A2Q14240 407 aaKnown RBP17.13■□□□□ 0.33
SMARCE1-218ENST00000582955 DDX54Q8TDD1 881 aaKnown RBP17.13■□□□□ 0.33
SMARCE1-218ENST00000582955 NPC1L1Q9UHC9 1359 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms