RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 BLMP54132 1417 aaPredicted RBP21.08■□□□□ 0.97
SS18-216ENST00000580751 TNNT2P45379 298 aaPredicted RBP21.07■□□□□ 0.96
SS18-216ENST00000580751 AMPHP49418 695 aa21.07■□□□□ 0.96
SS18-216ENST00000580751 RRS1Q15050 365 aaKnown RBP21.07■□□□□ 0.96
SS18-216ENST00000580751 RGS17Q9UGC6 210 aaPredicted RBP21.07■□□□□ 0.96
SS18-216ENST00000580751 TRPC5Q9UL62 973 aaPredicted RBP21.07■□□□□ 0.96
SS18-216ENST00000580751 COL5A2P05997 1499 aaPredicted RBP21.07■□□□□ 0.96
SS18-216ENST00000580751 ATRNO75882 1429 aa21.06■□□□□ 0.96
SS18-216ENST00000580751 FBLN1P23142 703 aa21.06■□□□□ 0.96
SS18-216ENST00000580751 IP6K1Q92551 441 aa21.05■□□□□ 0.96
SS18-216ENST00000580751 FLT4P35916 1363 aa21.05■□□□□ 0.96
SS18-216ENST00000580751 HOXC9P31274 260 aa21.04■□□□□ 0.96
SS18-216ENST00000580751 EVA1CP58658 441 aa21.04■□□□□ 0.96
SS18-216ENST00000580751 AXIN2Q9Y2T1 843 aa21.04■□□□□ 0.96
SS18-216ENST00000580751 MAP2P11137 1827 aaKnown RBP21.04■□□□□ 0.96
SS18-216ENST00000580751 SMG6Q86US8 1419 aaKnown RBP21.04■□□□□ 0.96
SS18-216ENST00000580751 CNGB1Q14028 1251 aaPredicted RBP21.03■□□□□ 0.96
SS18-216ENST00000580751 VPS72Q15906 364 aa21.03■□□□□ 0.96
SS18-216ENST00000580751 QTRT2Q9H974 415 aaKnown RBP21.03■□□□□ 0.96
SS18-216ENST00000580751 STRN4Q9NRL3 753 aa21.03■□□□□ 0.96
SS18-216ENST00000580751 PEAK1Q9H792 1746 aa21.03■□□□□ 0.96
SS18-216ENST00000580751 POLKQ9UBT6 870 aa21.02■□□□□ 0.96
SS18-216ENST00000580751 EMILIN1Q9Y6C2 1016 aa21.02■□□□□ 0.96
SS18-216ENST00000580751 RGPD5Q99666 1765 aa21.02■□□□□ 0.96
SS18-216ENST00000580751 ERBB3P21860 1342 aa21.01■□□□□ 0.95
SS18-216ENST00000580751 WDR17Q8IZU2 1322 aa21.01■□□□□ 0.95
SS18-216ENST00000580751 INSRP06213 1382 aa21■□□□□ 0.95
SS18-216ENST00000580751 PPM1GO15355 546 aaPredicted RBP21■□□□□ 0.95
SS18-216ENST00000580751 POTEAQ6S8J7 498 aa21■□□□□ 0.95
SS18-216ENST00000580751 CCDC9Q9Y3X0 531 aaKnown RBP21■□□□□ 0.95
SS18-216ENST00000580751 CDK12Q9NYV4 1490 aaPredicted RBP21■□□□□ 0.95
SS18-216ENST00000580751 FAM208AQ9UK61 1670 aaKnown RBP20.99■□□□□ 0.95
SS18-216ENST00000580751 PARD3Q8TEW0 1356 aa20.99■□□□□ 0.95
SS18-216ENST00000580751 CRB1P82279 1406 aa20.99■□□□□ 0.95
SS18-216ENST00000580751 CSB-PGBD3P0DP91 1061 aa20.99■□□□□ 0.95
SS18-216ENST00000580751 RBM6P78332 1123 aaKnown RBP20.98■□□□□ 0.95
SS18-216ENST00000580751 LARP1Q6PKG0 1096 aaKnown RBP20.98■□□□□ 0.95
SS18-216ENST00000580751 ANKRD24Q8TF21 1146 aa20.98■□□□□ 0.95
SS18-216ENST00000580751 GJD4Q96KN9 370 aaPredicted RBP20.98■□□□□ 0.95
SS18-216ENST00000580751 SPATA31A5Q5VU36 1347 aa20.98■□□□□ 0.95
SS18-216ENST00000580751 SPATA31A7Q8IWB4 1347 aa20.98■□□□□ 0.95
SS18-216ENST00000580751 RXRBP28702 533 aa20.97■□□□□ 0.95
SS18-216ENST00000580751 HSP90AB2PQ58FF8 381 aa20.97■□□□□ 0.95
SS18-216ENST00000580751 TOM1L2Q6ZVM7 507 aa20.97■□□□□ 0.95
SS18-216ENST00000580751 GLI3P10071 1580 aa20.97■□□□□ 0.95
SS18-216ENST00000580751 ANP32CO43423 234 aa20.96■□□□□ 0.95
SS18-216ENST00000580751 SPATA31A1Q5TZJ5 1347 aa20.96■□□□□ 0.95
SS18-216ENST00000580751 RALBP1Q15311 655 aa20.95■□□□□ 0.94
SS18-216ENST00000580751 MTHFSP49914 203 aa20.94■□□□□ 0.94
SS18-216ENST00000580751 LTV1Q96GA3 475 aaPredicted RBP20.94■□□□□ 0.94
SS18-216ENST00000580751 CARD10Q9BWT7 1032 aa20.93■□□□□ 0.94
SS18-216ENST00000580751 PPP2R1AP30153 589 aa20.92■□□□□ 0.94
SS18-216ENST00000580751 TCP11L2Q8N4U5 519 aa20.92■□□□□ 0.94
SS18-216ENST00000580751 NLRP2Q9NX02 1062 aa20.92■□□□□ 0.94
SS18-216ENST00000580751 THRAP3Q9Y2W1 955 aaKnown RBP20.92■□□□□ 0.94
SS18-216ENST00000580751 USP35Q9P2H5 1018 aa20.91■□□□□ 0.94
SS18-216ENST00000580751 BARGINQ6ZT62 677 aa20.89■□□□□ 0.93
SS18-216ENST00000580751 EIF4A2Q14240 407 aaKnown RBP20.88■□□□□ 0.93
SS18-216ENST00000580751 FAM98CQ17RN3 349 aaKnown RBP20.88■□□□□ 0.93
SS18-216ENST00000580751 CFAP53Q96M91 514 aa20.88■□□□□ 0.93
SS18-216ENST00000580751 PRKRIP1Q9H875 184 aaPredicted RBP20.88■□□□□ 0.93
SS18-216ENST00000580751 WNK3Q9BYP7 1800 aa20.88■□□□□ 0.93
SS18-216ENST00000580751 RGS12O14924 1447 aa20.87■□□□□ 0.93
SS18-216ENST00000580751 THSD7AQ9UPZ6 1657 aa20.87■□□□□ 0.93
SS18-216ENST00000580751 MYBBP1AQ9BQG0 1328 aaKnown RBP20.87■□□□□ 0.93
SS18-216ENST00000580751 ONECUT3O60422 494 aaPredicted RBP20.87■□□□□ 0.93
SS18-216ENST00000580751 CDCA7Q9BWT1 371 aaPredicted RBP20.86■□□□□ 0.93
SS18-216ENST00000580751 COL3A1P02461 1466 aaPredicted RBP20.86■□□□□ 0.93
SS18-216ENST00000580751 RGPD2P0DJD1 1756 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 A0A0G2JS52 829 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 CCER2I3L3R5 266 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 MYT1Q01538 1121 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 NBPF6Q5VWK0 638 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 MIER1Q8N108 512 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 NBPF4Q96M43 638 aa20.85■□□□□ 0.93
SS18-216ENST00000580751 NCAPD2Q15021 1401 aa20.84■□□□□ 0.93
SS18-216ENST00000580751 DIAPH1O60610 1272 aaKnown RBP20.83■□□□□ 0.93
SS18-216ENST00000580751 SEPT12Q8IYM1 358 aa20.83■□□□□ 0.93
SS18-216ENST00000580751 DISP2A7MBM2 1401 aa20.83■□□□□ 0.93
SS18-216ENST00000580751 PARP4Q9UKK3 1724 aaKnown RBP20.83■□□□□ 0.92
SS18-216ENST00000580751 IGSF1Q8N6C5 1336 aa20.82■□□□□ 0.92
SS18-216ENST00000580751 IL13P35225 146 aa20.82■□□□□ 0.92
SS18-216ENST00000580751 EYA1Q99502 592 aa20.82■□□□□ 0.92
SS18-216ENST00000580751 RGPD1P0DJD0 1748 aa20.81■□□□□ 0.92
SS18-216ENST00000580751 IL2RBP14784 551 aa20.81■□□□□ 0.92
SS18-216ENST00000580751 USHBP1Q8N6Y0 703 aa20.81■□□□□ 0.92
SS18-216ENST00000580751 LRRC37A3O60309 1634 aa20.8■□□□□ 0.92
SS18-216ENST00000580751 RAPGEF4Q8WZA2 1011 aa20.79■□□□□ 0.92
SS18-216ENST00000580751 NUDCQ9Y266 331 aa20.78■□□□□ 0.92
SS18-216ENST00000580751 MEGF6O75095 1541 aa20.78■□□□□ 0.92
SS18-216ENST00000580751 PLEKHG2Q9H7P9 1386 aa20.77■□□□□ 0.92
SS18-216ENST00000580751 DDB1Q16531 1140 aa20.77■□□□□ 0.92
SS18-216ENST00000580751 TNS2Q63HR2 1409 aa20.77■□□□□ 0.91
SS18-216ENST00000580751 BRWD3Q6RI45 1802 aa20.76■□□□□ 0.91
SS18-216ENST00000580751 KDRP35968 1356 aa20.76■□□□□ 0.91
SS18-216ENST00000580751 OVOS2A0A0G2JMS6 1433 aa20.76■□□□□ 0.91
SS18-216ENST00000580751 U2SURPO15042 1029 aaKnown RBP20.75■□□□□ 0.91
SS18-216ENST00000580751 TATP17735 454 aaPredicted RBP20.75■□□□□ 0.91
SS18-216ENST00000580751 ILDR2Q71H61 639 aa20.75■□□□□ 0.91
SS18-216ENST00000580751 EXOC5O00471 708 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms