RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 CRYBG1Q9Y4K1 1723 aa20.27■□□□□ 0.83
SS18-206ENST00000577572 COL22A1Q8NFW1 1626 aaPredicted RBP20.27■□□□□ 0.83
SS18-206ENST00000577572 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
SS18-206ENST00000577572 YTHDC1Q96MU7 727 aaKnown RBP20.26■□□□□ 0.83
SS18-206ENST00000577572 COL16A1Q07092 1604 aaPredicted RBP20.26■□□□□ 0.83
SS18-206ENST00000577572 U2SURPO15042 1029 aaKnown RBP20.25■□□□□ 0.83
SS18-206ENST00000577572 RUNDC1Q96C34 613 aa20.25■□□□□ 0.83
SS18-206ENST00000577572 ZBED9Q6R2W3 1325 aa20.25■□□□□ 0.83
SS18-206ENST00000577572 PHLPP1O60346 1717 aa20.24■□□□□ 0.83
SS18-206ENST00000577572 LTN1O94822 1766 aa20.22■□□□□ 0.83
SS18-206ENST00000577572 NEFMP07197 916 aa20.22■□□□□ 0.83
SS18-206ENST00000577572 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
SS18-206ENST00000577572 HAP1P54257 671 aaPredicted RBP20.22■□□□□ 0.83
SS18-206ENST00000577572 IGSF1Q8N6C5 1336 aa20.22■□□□□ 0.83
SS18-206ENST00000577572 ZC3H6P61129 1189 aaKnown RBP20.21■□□□□ 0.83
SS18-206ENST00000577572 CABLES1Q8TDN4 633 aa20.21■□□□□ 0.83
SS18-206ENST00000577572 KDRP35968 1356 aa20.21■□□□□ 0.83
SS18-206ENST00000577572 KIAA0232Q92628 1395 aa20.21■□□□□ 0.83
SS18-206ENST00000577572 PLEKHF1Q96S99 279 aa20.2■□□□□ 0.82
SS18-206ENST00000577572 RSPH6AQ9H0K4 717 aa20.2■□□□□ 0.82
SS18-206ENST00000577572 JCADQ9P266 1359 aa20.2■□□□□ 0.82
SS18-206ENST00000577572 PLEKHG2Q9H7P9 1386 aa20.19■□□□□ 0.82
SS18-206ENST00000577572 RGPD1P0DJD0 1748 aa20.19■□□□□ 0.82
SS18-206ENST00000577572 PRDM11Q9NQV5 511 aa20.18■□□□□ 0.82
SS18-206ENST00000577572 MAPK8IP3Q9UPT6 1336 aa20.18■□□□□ 0.82
SS18-206ENST00000577572 ABCA3Q99758 1704 aa20.17■□□□□ 0.82
SS18-206ENST00000577572 PDE3BQ13370 1112 aa20.17■□□□□ 0.82
SS18-206ENST00000577572 CCDC27Q2M243 656 aa20.17■□□□□ 0.82
SS18-206ENST00000577572 EYA1Q99502 592 aa20.17■□□□□ 0.82
SS18-206ENST00000577572 ERBB3P21860 1342 aa20.17■□□□□ 0.82
SS18-206ENST00000577572 ANKRD24Q8TF21 1146 aa20.16■□□□□ 0.82
SS18-206ENST00000577572 NCAPD2Q15021 1401 aa20.16■□□□□ 0.82
SS18-206ENST00000577572 COL18A1P39060 1754 aa20.16■□□□□ 0.82
SS18-206ENST00000577572 APAF1O14727 1248 aa20.15■□□□□ 0.82
SS18-206ENST00000577572 SULT6B1Q6IMI4 303 aa20.15■□□□□ 0.82
SS18-206ENST00000577572 TCP11L2Q8N4U5 519 aa20.15■□□□□ 0.82
SS18-206ENST00000577572 AXIN2Q9Y2T1 843 aa20.15■□□□□ 0.82
SS18-206ENST00000577572 SPATA31A6Q5VVP1 1343 aa20.14■□□□□ 0.81
SS18-206ENST00000577572 PRKAR2BP31323 418 aa20.14■□□□□ 0.81
SS18-206ENST00000577572 ZBTB7CA1YPR0 619 aa20.13■□□□□ 0.81
SS18-206ENST00000577572 CCDC146Q8IYE0 955 aa20.13■□□□□ 0.81
SS18-206ENST00000577572 HMOX1P09601 288 aa20.12■□□□□ 0.81
SS18-206ENST00000577572 PHF23Q9BUL5 403 aaPredicted RBP20.12■□□□□ 0.81
SS18-206ENST00000577572 LMO7Q8WWI1 1683 aa20.12■□□□□ 0.81
SS18-206ENST00000577572 FAM208AQ9UK61 1670 aaKnown RBP20.11■□□□□ 0.81
SS18-206ENST00000577572 PLEKHG5O94827 1062 aa20.11■□□□□ 0.81
SS18-206ENST00000577572 FAM83GA6ND36 823 aa20.1■□□□□ 0.81
SS18-206ENST00000577572 TMPOP42166 694 aaKnown RBP20.1■□□□□ 0.81
SS18-206ENST00000577572 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
SS18-206ENST00000577572 LTV1Q96GA3 475 aaPredicted RBP20.1■□□□□ 0.81
SS18-206ENST00000577572 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
SS18-206ENST00000577572 CAMTA1Q9Y6Y1 1673 aa20.1■□□□□ 0.81
SS18-206ENST00000577572 WDR17Q8IZU2 1322 aa20.09■□□□□ 0.81
SS18-206ENST00000577572 ZNF521Q96K83 1311 aa20.09■□□□□ 0.81
SS18-206ENST00000577572 COL14A1Q05707 1796 aaKnown RBP20.09■□□□□ 0.81
SS18-206ENST00000577572 LMOD3Q0VAK6 560 aa20.09■□□□□ 0.81
SS18-206ENST00000577572 CHRNA2Q15822 529 aa20.09■□□□□ 0.81
SS18-206ENST00000577572 NFE2L2Q16236 605 aa20.09■□□□□ 0.81
SS18-206ENST00000577572 COL5A2P05997 1499 aaPredicted RBP20.08■□□□□ 0.81
SS18-206ENST00000577572 AEBP1Q8IUX7 1158 aa20.08■□□□□ 0.81
SS18-206ENST00000577572 WDR63Q8IWG1 891 aa20.07■□□□□ 0.8
SS18-206ENST00000577572 GAS2L2Q8NHY3 880 aa20.07■□□□□ 0.8
SS18-206ENST00000577572 CSB-PGBD3P0DP91 1061 aa20.06■□□□□ 0.8
SS18-206ENST00000577572 AMOTQ4VCS5 1084 aa20.06■□□□□ 0.8
SS18-206ENST00000577572 HTATSF1O43719 755 aaKnown RBP20.05■□□□□ 0.8
SS18-206ENST00000577572 HSPA1LP34931 641 aa20.05■□□□□ 0.8
SS18-206ENST00000577572 CALD1Q05682 793 aaKnown RBP20.05■□□□□ 0.8
SS18-206ENST00000577572 WWC1Q8IX03 1113 aa20.05■□□□□ 0.8
SS18-206ENST00000577572 PHACTR3Q96KR7 559 aa20.05■□□□□ 0.8
SS18-206ENST00000577572 CARD10Q9BWT7 1032 aa20.05■□□□□ 0.8
SS18-206ENST00000577572 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.05■□□□□ 0.87e-7■■■□□ 14.8
SS18-206ENST00000577572 RIPK4P57078 832 aa20.04■□□□□ 0.8
SS18-206ENST00000577572 EVA1CP58658 441 aa20.04■□□□□ 0.8
SS18-206ENST00000577572 GOLGA2Q08379 1002 aa20.04■□□□□ 0.8
SS18-206ENST00000577572 NLRP2Q9NX02 1062 aa20.04■□□□□ 0.8
SS18-206ENST00000577572 IL16Q14005 1332 aa20.03■□□□□ 0.8
SS18-206ENST00000577572 BTG4Q9NY30 223 aa20.02■□□□□ 0.8
SS18-206ENST00000577572 CRB1P82279 1406 aa20.02■□□□□ 0.79
SS18-206ENST00000577572 E9PSI1 815 aa20.01■□□□□ 0.79
SS18-206ENST00000577572 PLEKHO1Q53GL0 409 aaPredicted RBP20.01■□□□□ 0.79
SS18-206ENST00000577572 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
SS18-206ENST00000577572 TOM1L2Q6ZVM7 507 aa20■□□□□ 0.79
SS18-206ENST00000577572 TRIM35Q9UPQ4 493 aa20■□□□□ 0.79
SS18-206ENST00000577572 RGPD5Q99666 1765 aa20■□□□□ 0.79
SS18-206ENST00000577572 SLIT2O94813 1529 aa19.99■□□□□ 0.79
SS18-206ENST00000577572 ADAMTS2O95450 1211 aa19.99■□□□□ 0.79
SS18-206ENST00000577572 SALL2Q9Y467 1007 aaPredicted RBP19.99■□□□□ 0.79
SS18-206ENST00000577572 NUTM2BA6NNL0 878 aaPredicted RBP19.98■□□□□ 0.79
SS18-206ENST00000577572 NUTM2EB1AL46 878 aaPredicted RBP19.98■□□□□ 0.79
SS18-206ENST00000577572 TATP17735 454 aaPredicted RBP19.98■□□□□ 0.79
SS18-206ENST00000577572 NEUROD2Q15784 382 aa19.98■□□□□ 0.79
SS18-206ENST00000577572 MTHFSDQ2M296 383 aaKnown RBP19.98■□□□□ 0.79
SS18-206ENST00000577572 NUTM2AQ8IVF1 878 aaPredicted RBP19.98■□□□□ 0.79
SS18-206ENST00000577572 USHBP1Q8N6Y0 703 aa19.98■□□□□ 0.79
SS18-206ENST00000577572 RRP7AQ9Y3A4 280 aaKnown RBP19.98■□□□□ 0.79
SS18-206ENST00000577572 NWD2Q9ULI1 1742 aa19.98■□□□□ 0.79
SS18-206ENST00000577572 SLFN5Q08AF3 891 aa19.97■□□□□ 0.79
SS18-206ENST00000577572 TRMT2AQ8IZ69 625 aaKnown RBP19.97■□□□□ 0.79
SS18-206ENST00000577572 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
SS18-206ENST00000577572 THRAP3Q9Y2W1 955 aaKnown RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms