RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 FHDC1Q9C0D6 1143 aaPredicted RBP19.47■□□□□ 0.71
CCDC40-216ENST00000576241 LARP1Q6PKG0 1096 aaKnown RBP19.46■□□□□ 0.71
CCDC40-216ENST00000576241 ATF5Q9Y2D1 282 aaPredicted RBP19.46■□□□□ 0.71
CCDC40-216ENST00000576241 LMO7Q8WWI1 1683 aa19.46■□□□□ 0.71
CCDC40-216ENST00000576241 TCP11L2Q8N4U5 519 aa19.45■□□□□ 0.7
CCDC40-216ENST00000576241 SBNO2Q9Y2G9 1366 aa19.44■□□□□ 0.7
CCDC40-216ENST00000576241 GIGYF1O75420 1035 aaPredicted RBP19.44■□□□□ 0.7
CCDC40-216ENST00000576241 SLIT3O75094 1523 aa19.44■□□□□ 0.7
CCDC40-216ENST00000576241 COL5A2P05997 1499 aaPredicted RBP19.43■□□□□ 0.7
CCDC40-216ENST00000576241 RGPD3A6NKT7 1758 aaPredicted RBP19.43■□□□□ 0.7
CCDC40-216ENST00000576241 RGPD4Q7Z3J3 1758 aa19.43■□□□□ 0.7
CCDC40-216ENST00000576241 THRAP3Q9Y2W1 955 aaKnown RBP19.43■□□□□ 0.7
CCDC40-216ENST00000576241 TTC21BQ7Z4L5 1316 aa19.43■□□□□ 0.7
CCDC40-216ENST00000576241 TTC21AQ8NDW8 1320 aa19.43■□□□□ 0.7
CCDC40-216ENST00000576241 AATKQ6ZMQ8 1374 aa19.43■□□□□ 0.7
CCDC40-216ENST00000576241 PIK3C2AO00443 1686 aa19.42■□□□□ 0.7
CCDC40-216ENST00000576241 KTN1Q86UP2 1357 aaKnown RBP19.42■□□□□ 0.7
CCDC40-216ENST00000576241 PLSCR1O15162 318 aa19.41■□□□□ 0.7
CCDC40-216ENST00000576241 TRIM26Q12899 539 aaPredicted RBP19.41■□□□□ 0.7
CCDC40-216ENST00000576241 KCNH5Q8NCM2 988 aa19.41■□□□□ 0.7
CCDC40-216ENST00000576241 CRB1P82279 1406 aa19.41■□□□□ 0.7
CCDC40-216ENST00000576241 CPSF1Q10570 1443 aaKnown RBP19.41■□□□□ 0.7
CCDC40-216ENST00000576241 BCL11BQ9C0K0 894 aaPredicted RBP19.4■□□□□ 0.7
CCDC40-216ENST00000576241 SOX12O15370 315 aa19.38■□□□□ 0.69
CCDC40-216ENST00000576241 SBF2Q86WG5 1849 aa19.37■□□□□ 0.69
CCDC40-216ENST00000576241 AKAP12Q02952 1782 aa19.37■□□□□ 0.69
CCDC40-216ENST00000576241 C11orf95C9JLR9 678 aaPredicted RBP19.37■□□□□ 0.69
CCDC40-216ENST00000576241 PROM2Q8N271 834 aa19.37■□□□□ 0.69
CCDC40-216ENST00000576241 PEAK1Q9H792 1746 aa19.37■□□□□ 0.69
CCDC40-216ENST00000576241 PARP4Q9UKK3 1724 aaKnown RBP19.37■□□□□ 0.69
CCDC40-216ENST00000576241 TOM1L2Q6ZVM7 507 aa19.36■□□□□ 0.69
CCDC40-216ENST00000576241 PTF1AQ7RTS3 328 aa19.36■□□□□ 0.69
CCDC40-216ENST00000576241 ARHGEF25Q86VW2 580 aa19.36■□□□□ 0.69
CCDC40-216ENST00000576241 TMC1Q8TDI8 760 aa19.36■□□□□ 0.69
CCDC40-216ENST00000576241 HDGFL2Q7Z4V5 671 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-216ENST00000576241 SGIP1Q9BQI5 828 aa19.35■□□□□ 0.69
CCDC40-216ENST00000576241 OVOS2A0A0G2JMS6 1433 aa19.34■□□□□ 0.69
CCDC40-216ENST00000576241 OVOS2A0A0J9YW53 1432 aa19.34■□□□□ 0.69
CCDC40-216ENST00000576241 OVOS2Q6IE36 1432 aa19.34■□□□□ 0.69
CCDC40-216ENST00000576241 WDR17Q8IZU2 1322 aa19.34■□□□□ 0.69
CCDC40-216ENST00000576241 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.34■□□□□ 0.69
CCDC40-216ENST00000576241 MTFR1LQ9H019 292 aa19.33■□□□□ 0.68
CCDC40-216ENST00000576241 AXIN2Q9Y2T1 843 aa19.33■□□□□ 0.68
CCDC40-216ENST00000576241 CSB-PGBD3P0DP91 1061 aa19.32■□□□□ 0.68
CCDC40-216ENST00000576241 STK32BQ9NY57 414 aa19.32■□□□□ 0.68
CCDC40-216ENST00000576241 TERF2IPQ9NYB0 399 aa19.32■□□□□ 0.68
CCDC40-216ENST00000576241 MON2Q7Z3U7 1717 aa19.31■□□□□ 0.68
CCDC40-216ENST00000576241 GPR162Q16538 588 aa19.31■□□□□ 0.68
CCDC40-216ENST00000576241 PUS7Q96PZ0 661 aaKnown RBP19.31■□□□□ 0.68
CCDC40-216ENST00000576241 NFAT5O94916 1531 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 CD163L1Q9NR16 1453 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 COL18A1P39060 1754 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 SLC24A1O60721 1099 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 SLC15A2Q16348 729 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 DDB1Q16531 1140 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 NME9Q86XW9 330 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 ARXQ96QS3 562 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 CDCA7Q9BWT1 371 aaPredicted RBP19.3■□□□□ 0.68
CCDC40-216ENST00000576241 SLC12A5Q9H2X9 1139 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 USP31Q70CQ4 1352 aa19.3■□□□□ 0.68
CCDC40-216ENST00000576241 SHANK3Q9BYB0 1731 aa19.29■□□□□ 0.68
CCDC40-216ENST00000576241 EDC4Q6P2E9 1401 aaKnown RBP19.29■□□□□ 0.68
CCDC40-216ENST00000576241 ST20-MTHFSA0A0A6YYL1 179 aa19.28■□□□□ 0.68
CCDC40-216ENST00000576241 CARD10Q9BWT7 1032 aa19.28■□□□□ 0.68
CCDC40-216ENST00000576241 ABCC6O95255 1503 aa19.28■□□□□ 0.68
CCDC40-216ENST00000576241 LRRC37A3O60309 1634 aa19.27■□□□□ 0.68
CCDC40-216ENST00000576241 TXNRD1Q16881 649 aa19.27■□□□□ 0.68
CCDC40-216ENST00000576241 A0A1W2PP64 1363 aa19.27■□□□□ 0.68
CCDC40-216ENST00000576241 MAP3K5Q99683 1374 aa19.27■□□□□ 0.68
CCDC40-216ENST00000576241 TESK2Q96S53 571 aa19.26■□□□□ 0.67
CCDC40-216ENST00000576241 CCDC7Q96M83 1385 aa19.24■□□□□ 0.67
CCDC40-216ENST00000576241 USP54Q70EL1 1684 aa19.23■□□□□ 0.67
CCDC40-216ENST00000576241 GOLGB1Q14789 3259 aaKnown RBP19.22■□□□□ 0.67
CCDC40-216ENST00000576241 PELP1Q8IZL8 1130 aaKnown RBP19.22■□□□□ 0.67
CCDC40-216ENST00000576241 ERBB3P21860 1342 aa19.22■□□□□ 0.67
CCDC40-216ENST00000576241 EXOC5O00471 708 aa19.21■□□□□ 0.67
CCDC40-216ENST00000576241 MARCH10Q8NA82 808 aaPredicted RBP19.21■□□□□ 0.67
CCDC40-216ENST00000576241 RGPD5Q99666 1765 aa19.21■□□□□ 0.67
CCDC40-216ENST00000576241 WNK3Q9BYP7 1800 aa19.21■□□□□ 0.67
CCDC40-216ENST00000576241 USP47Q96K76 1375 aa19.2■□□□□ 0.66
CCDC40-216ENST00000576241 NLRP2Q9NX02 1062 aa19.2■□□□□ 0.66
CCDC40-216ENST00000576241 TMF1P82094 1093 aa19.19■□□□□ 0.66
CCDC40-216ENST00000576241 KLHL34Q8N239 644 aa19.19■□□□□ 0.66
CCDC40-216ENST00000576241 BCL9O00512 1426 aa19.18■□□□□ 0.66
CCDC40-216ENST00000576241 ANKRD24Q8TF21 1146 aa19.18■□□□□ 0.66
CCDC40-216ENST00000576241 COG3Q96JB2 828 aa19.18■□□□□ 0.66
CCDC40-216ENST00000576241 TNS2Q63HR2 1409 aa19.17■□□□□ 0.66
CCDC40-216ENST00000576241 HSPA6P17066 643 aa19.17■□□□□ 0.66
CCDC40-216ENST00000576241 ANKRD36BQ8N2N9 1353 aa19.17■□□□□ 0.66
CCDC40-216ENST00000576241 LTN1O94822 1766 aa19.16■□□□□ 0.66
CCDC40-216ENST00000576241 IL2RBP14784 551 aa19.15■□□□□ 0.66
CCDC40-216ENST00000576241 CDCA8Q53HL2 280 aa19.15■□□□□ 0.66
CCDC40-216ENST00000576241 IP6K1Q92551 441 aa19.14■□□□□ 0.65
CCDC40-216ENST00000576241 TIMELESSQ9UNS1 1208 aa19.14■□□□□ 0.65
CCDC40-216ENST00000576241 ATP10DQ9P241 1426 aa19.13■□□□□ 0.65
CCDC40-216ENST00000576241 CLSPNQ9HAW4 1339 aa19.12■□□□□ 0.65
CCDC40-216ENST00000576241 NLGN2Q8NFZ4 835 aa19.12■□□□□ 0.65
CCDC40-216ENST00000576241 PCGF6Q9BYE7 350 aa19.12■□□□□ 0.65
CCDC40-216ENST00000576241 PAPPAQ13219 1627 aa19.11■□□□□ 0.65
CCDC40-216ENST00000576241 LTV1Q96GA3 475 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms