RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 ZBTB7CA1YPR0 619 aa18.77■□□□□ 0.6
CIITA-210ENST00000575513 C11orf95C9JLR9 678 aaPredicted RBP18.77■□□□□ 0.6
CIITA-210ENST00000575513 TCP11L2Q8N4U5 519 aa18.76■□□□□ 0.59
CIITA-210ENST00000575513 POLR3GLQ9BT43 218 aa18.76■□□□□ 0.59
CIITA-210ENST00000575513 WDR17Q8IZU2 1322 aa18.75■□□□□ 0.59
CIITA-210ENST00000575513 CRB1P82279 1406 aa18.75■□□□□ 0.59
CIITA-210ENST00000575513 COL18A1P39060 1754 aa18.75■□□□□ 0.59
CIITA-210ENST00000575513 CGNL1Q0VF96 1302 aa18.74■□□□□ 0.59
CIITA-210ENST00000575513 MYOM1P52179 1685 aa18.74■□□□□ 0.59
CIITA-210ENST00000575513 KRT27Q7Z3Y8 459 aa18.74■□□□□ 0.59
CIITA-210ENST00000575513 GGNBP2Q9H3C7 697 aa18.74■□□□□ 0.59
CIITA-210ENST00000575513 NSD3Q9BZ95 1437 aa18.74■□□□□ 0.59
CIITA-210ENST00000575513 CCDC125Q86Z20 511 aa18.73■□□□□ 0.59
CIITA-210ENST00000575513 IP6K1Q92551 441 aa18.73■□□□□ 0.59
CIITA-210ENST00000575513 PANK3Q9H999 370 aa18.73■□□□□ 0.59
CIITA-210ENST00000575513 TOM1L2Q6ZVM7 507 aa18.72■□□□□ 0.59
CIITA-210ENST00000575513 CARD10Q9BWT7 1032 aa18.72■□□□□ 0.59
CIITA-210ENST00000575513 USP35Q9P2H5 1018 aa18.72■□□□□ 0.59
CIITA-210ENST00000575513 KIF7Q2M1P5 1343 aa18.72■□□□□ 0.59
CIITA-210ENST00000575513 A0A0G2JS52 829 aa18.71■□□□□ 0.59
CIITA-210ENST00000575513 MYT1Q01538 1121 aa18.71■□□□□ 0.59
CIITA-210ENST00000575513 BLMP54132 1417 aaPredicted RBP18.7■□□□□ 0.58
CIITA-210ENST00000575513 CDCA7Q9BWT1 371 aaPredicted RBP18.7■□□□□ 0.58
CIITA-210ENST00000575513 CSB-PGBD3P0DP91 1061 aa18.69■□□□□ 0.58
CIITA-210ENST00000575513 ERBB3P21860 1342 aa18.69■□□□□ 0.58
CIITA-210ENST00000575513 MAP3K19Q56UN5 1328 aa18.69■□□□□ 0.58
CIITA-210ENST00000575513 THSD7AQ9UPZ6 1657 aa18.68■□□□□ 0.58
CIITA-210ENST00000575513 KIF24Q5T7B8 1368 aa18.68■□□□□ 0.58
CIITA-210ENST00000575513 CCDC7Q96M83 1385 aa18.68■□□□□ 0.58
CIITA-210ENST00000575513 AMPHP49418 695 aa18.67■□□□□ 0.58
CIITA-210ENST00000575513 RTL1A6NKG5 1358 aa18.67■□□□□ 0.58
CIITA-210ENST00000575513 FBLN1P23142 703 aa18.66■□□□□ 0.58
CIITA-210ENST00000575513 HOXC9P31274 260 aa18.66■□□□□ 0.58
CIITA-210ENST00000575513 ZEB1P37275 1124 aaPredicted RBP18.66■□□□□ 0.58
CIITA-210ENST00000575513 ANKRD24Q8TF21 1146 aa18.66■□□□□ 0.58
CIITA-210ENST00000575513 NSD2O96028 1365 aa18.66■□□□□ 0.58
CIITA-210ENST00000575513 PDE3BQ13370 1112 aa18.65■□□□□ 0.58
CIITA-210ENST00000575513 KNSTRNQ9Y448 316 aa18.65■□□□□ 0.58
CIITA-210ENST00000575513 EP400Q96L91 3159 aa18.64■□□□□ 0.57
CIITA-210ENST00000575513 RRS1Q15050 365 aaKnown RBP18.64■□□□□ 0.57
CIITA-210ENST00000575513 FAM196AQ6ZSG2 479 aa18.63■□□□□ 0.57
CIITA-210ENST00000575513 NLRP2Q9NX02 1062 aa18.63■□□□□ 0.57
CIITA-210ENST00000575513 LTN1O94822 1766 aa18.63■□□□□ 0.57
CIITA-210ENST00000575513 BRWD3Q6RI45 1802 aa18.63■□□□□ 0.57
CIITA-210ENST00000575513 KIF20BQ96Q89 1820 aa18.63■□□□□ 0.57
CIITA-210ENST00000575513 WASHC2AQ641Q2 1341 aa18.62■□□□□ 0.57
CIITA-210ENST00000575513 DDB1Q16531 1140 aa18.61■□□□□ 0.57
CIITA-210ENST00000575513 DISP2A7MBM2 1401 aa18.6■□□□□ 0.57
CIITA-210ENST00000575513 INSRP06213 1382 aa18.6■□□□□ 0.57
CIITA-210ENST00000575513 FLT4P35916 1363 aa18.6■□□□□ 0.57
CIITA-210ENST00000575513 PER1O15534 1290 aaPredicted RBP18.6■□□□□ 0.57
CIITA-210ENST00000575513 RGPD5Q99666 1765 aa18.6■□□□□ 0.57
CIITA-210ENST00000575513 AMER1Q5JTC6 1135 aaPredicted RBP18.59■□□□□ 0.57
CIITA-210ENST00000575513 EXOC5O00471 708 aa18.58■□□□□ 0.56
CIITA-210ENST00000575513 IL2RBP14784 551 aa18.58■□□□□ 0.56
CIITA-210ENST00000575513 SF3B2Q13435 895 aaKnown RBP18.58■□□□□ 0.56
CIITA-210ENST00000575513 POLKQ9UBT6 870 aa18.58■□□□□ 0.56
CIITA-210ENST00000575513 PARP4Q9UKK3 1724 aaKnown RBP18.57■□□□□ 0.56
CIITA-210ENST00000575513 HSP90AB2PQ58FF8 381 aa18.57■□□□□ 0.56
CIITA-210ENST00000575513 LTV1Q96GA3 475 aaPredicted RBP18.57■□□□□ 0.56
CIITA-210ENST00000575513 EMILIN1Q9Y6C2 1016 aa18.57■□□□□ 0.56
CIITA-210ENST00000575513 SMG6Q86US8 1419 aaKnown RBP18.57■□□□□ 0.56
CIITA-210ENST00000575513 FAM182BQ5T319 152 aa18.56■□□□□ 0.56
CIITA-210ENST00000575513 MORC1Q86VD1 984 aa18.56■□□□□ 0.56
CIITA-210ENST00000575513 BCL9O00512 1426 aa18.55■□□□□ 0.56
CIITA-210ENST00000575513 NPC1L1Q9UHC9 1359 aa18.55■□□□□ 0.56
CIITA-210ENST00000575513 NBPF6Q5VWK0 638 aa18.53■□□□□ 0.56
CIITA-210ENST00000575513 NBPF4Q96M43 638 aa18.53■□□□□ 0.56
CIITA-210ENST00000575513 FAM208AQ9UK61 1670 aaKnown RBP18.53■□□□□ 0.56
CIITA-210ENST00000575513 OVOS2A0A0G2JMS6 1433 aa18.52■□□□□ 0.56
CIITA-210ENST00000575513 PPM1GO15355 546 aaPredicted RBP18.52■□□□□ 0.56
CIITA-210ENST00000575513 TNNT2P45379 298 aaPredicted RBP18.52■□□□□ 0.56
CIITA-210ENST00000575513 BAG6P46379 1132 aa18.52■□□□□ 0.56
CIITA-210ENST00000575513 MARCH10Q8NA82 808 aaPredicted RBP18.52■□□□□ 0.56
CIITA-210ENST00000575513 ANKRD26Q9UPS8 1709 aa18.52■□□□□ 0.55
CIITA-210ENST00000575513 TNS2Q63HR2 1409 aa18.5■□□□□ 0.55
CIITA-210ENST00000575513 LRRC37A3O60309 1634 aa18.5■□□□□ 0.55
CIITA-210ENST00000575513 PEAK1Q9H792 1746 aa18.5■□□□□ 0.55
CIITA-210ENST00000575513 TRIM37O94972 964 aa18.5■□□□□ 0.55
CIITA-210ENST00000575513 WNK3Q9BYP7 1800 aa18.49■□□□□ 0.55
CIITA-210ENST00000575513 DEFB132Q7Z7B7 95 aa18.47■□□□□ 0.55
CIITA-210ENST00000575513 RAPGEF4Q8WZA2 1011 aa18.47■□□□□ 0.55
CIITA-210ENST00000575513 BCL11BQ9C0K0 894 aaPredicted RBP18.47■□□□□ 0.55
CIITA-210ENST00000575513 MAP2P11137 1827 aaKnown RBP18.46■□□□□ 0.55
CIITA-210ENST00000575513 ZCRB1Q8TBF4 217 aaKnown RBP18.46■□□□□ 0.55
CIITA-210ENST00000575513 NCAPD2Q15021 1401 aa18.46■□□□□ 0.55
CIITA-210ENST00000575513 APBA3O96018 575 aa18.45■□□□□ 0.54
CIITA-210ENST00000575513 TATP17735 454 aaPredicted RBP18.45■□□□□ 0.54
CIITA-210ENST00000575513 EIF4A2Q14240 407 aaKnown RBP18.45■□□□□ 0.54
CIITA-210ENST00000575513 CC2D1BQ5T0F9 858 aaKnown RBP18.45■□□□□ 0.54
CIITA-210ENST00000575513 EYA1Q99502 592 aa18.45■□□□□ 0.54
CIITA-210ENST00000575513 RGPD1P0DJD0 1748 aa18.45■□□□□ 0.54
CIITA-210ENST00000575513 PARD3Q8TEW0 1356 aa18.44■□□□□ 0.54
CIITA-210ENST00000575513 USHBP1Q8N6Y0 703 aa18.44■□□□□ 0.54
CIITA-210ENST00000575513 PLEKHG2Q9H7P9 1386 aa18.43■□□□□ 0.54
CIITA-210ENST00000575513 EN1Q05925 392 aaPredicted RBP18.43■□□□□ 0.54
CIITA-210ENST00000575513 CAMKK2Q96RR4 588 aa18.43■□□□□ 0.54
CIITA-210ENST00000575513 PLSCR1O15162 318 aa18.42■□□□□ 0.54
CIITA-210ENST00000575513 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.42■□□□□ 0.54
CIITA-210ENST00000575513 MEGF6O75095 1541 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms