RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 POLKQ9UBT6 870 aa23.13■■□□□ 1.29
NUP88-210ENST00000574867 NRAPQ86VF7 1730 aa23.13■■□□□ 1.29
NUP88-210ENST00000574867 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.13■■□□□ 1.29
NUP88-210ENST00000574867 NGLY1Q96IV0 654 aa23.13■■□□□ 1.29
NUP88-210ENST00000574867 PRKRIP1Q9H875 184 aaPredicted RBP23.13■■□□□ 1.29
NUP88-210ENST00000574867 EMILIN1Q9Y6C2 1016 aa23.13■■□□□ 1.29
NUP88-210ENST00000574867 IP6K1Q92551 441 aa23.12■■□□□ 1.29
NUP88-210ENST00000574867 CAMTA1Q9Y6Y1 1673 aa23.11■■□□□ 1.29
NUP88-210ENST00000574867 RGPD5Q99666 1765 aa23.11■■□□□ 1.29
NUP88-210ENST00000574867 FNBP4Q8N3X1 1017 aaPredicted RBP23.11■■□□□ 1.29
NUP88-210ENST00000574867 ANP32CO43423 234 aa23.1■■□□□ 1.29
NUP88-210ENST00000574867 HOXC9P31274 260 aa23.1■■□□□ 1.29
NUP88-210ENST00000574867 PPP2R1AP30153 589 aa23.1■■□□□ 1.29
NUP88-210ENST00000574867 COL5A2P05997 1499 aaPredicted RBP23.09■■□□□ 1.29
NUP88-210ENST00000574867 BTG4Q9NY30 223 aa23.09■■□□□ 1.29
NUP88-210ENST00000574867 MYBBP1AQ9BQG0 1328 aaKnown RBP23.09■■□□□ 1.29
NUP88-210ENST00000574867 INSRP06213 1382 aa23.09■■□□□ 1.29
NUP88-210ENST00000574867 PPM1GO15355 546 aaPredicted RBP23.09■■□□□ 1.29
NUP88-210ENST00000574867 FAM208AQ9UK61 1670 aaKnown RBP23.08■■□□□ 1.29
NUP88-210ENST00000574867 AFF2P51816 1311 aa23.08■■□□□ 1.28
NUP88-210ENST00000574867 MTHFSP49914 203 aa23.07■■□□□ 1.28
NUP88-210ENST00000574867 AXIN2Q9Y2T1 843 aa23.07■■□□□ 1.28
NUP88-210ENST00000574867 BCL9LQ86UU0 1499 aa23.07■■□□□ 1.28
NUP88-210ENST00000574867 DIEXFQ68CQ4 756 aaKnown RBP23.07■■□□□ 1.28
NUP88-210ENST00000574867 ERBB3P21860 1342 aa23.05■■□□□ 1.28
NUP88-210ENST00000574867 UNC5CLQ8IV45 518 aa23.05■■□□□ 1.28
NUP88-210ENST00000574867 USP21Q9UK80 565 aa23.04■■□□□ 1.28
NUP88-210ENST00000574867 HSP90AB2PQ58FF8 381 aa23.04■■□□□ 1.28
NUP88-210ENST00000574867 COL3A1P02461 1466 aaPredicted RBP23.02■■□□□ 1.28
NUP88-210ENST00000574867 WDR17Q8IZU2 1322 aa23.02■■□□□ 1.28
NUP88-210ENST00000574867 EVA1CP58658 441 aa23.02■■□□□ 1.28
NUP88-210ENST00000574867 ZNF772Q68DY9 489 aaPredicted RBP23.02■■□□□ 1.28
NUP88-210ENST00000574867 ANKRD24Q8TF21 1146 aa23.02■■□□□ 1.28
NUP88-210ENST00000574867 CFAP53Q96M91 514 aa23.02■■□□□ 1.28
NUP88-210ENST00000574867 PHF23Q9BUL5 403 aaPredicted RBP23.01■■□□□ 1.27
NUP88-210ENST00000574867 STRN4Q9NRL3 753 aa23.01■■□□□ 1.27
NUP88-210ENST00000574867 CRB1P82279 1406 aa23■■□□□ 1.27
NUP88-210ENST00000574867 CSB-PGBD3P0DP91 1061 aa22.99■■□□□ 1.27
NUP88-210ENST00000574867 ATRNO75882 1429 aa22.99■■□□□ 1.27
NUP88-210ENST00000574867 VPS72Q15906 364 aa22.98■■□□□ 1.27
NUP88-210ENST00000574867 LTV1Q96GA3 475 aaPredicted RBP22.97■■□□□ 1.27
NUP88-210ENST00000574867 TRPC5Q9UL62 973 aaPredicted RBP22.97■■□□□ 1.27
NUP88-210ENST00000574867 EIF4A2Q14240 407 aaKnown RBP22.97■■□□□ 1.27
NUP88-210ENST00000574867 LARP1Q6PKG0 1096 aaKnown RBP22.96■■□□□ 1.27
NUP88-210ENST00000574867 DIAPH1O60610 1272 aaKnown RBP22.96■■□□□ 1.27
NUP88-210ENST00000574867 TOM1L2Q6ZVM7 507 aa22.96■■□□□ 1.27
NUP88-210ENST00000574867 RGPD1P0DJD0 1748 aa22.95■■□□□ 1.27
NUP88-210ENST00000574867 RGPD2P0DJD1 1756 aa22.95■■□□□ 1.26
NUP88-210ENST00000574867 SPATA31A5Q5VU36 1347 aa22.94■■□□□ 1.26
NUP88-210ENST00000574867 SPATA31A7Q8IWB4 1347 aa22.94■■□□□ 1.26
NUP88-210ENST00000574867 IL13P35225 146 aa22.93■■□□□ 1.26
NUP88-210ENST00000574867 CARD10Q9BWT7 1032 aa22.93■■□□□ 1.26
NUP88-210ENST00000574867 NLRP2Q9NX02 1062 aa22.93■■□□□ 1.26
NUP88-210ENST00000574867 NCAPD2Q15021 1401 aa22.93■■□□□ 1.26
NUP88-210ENST00000574867 QTRT2Q9H974 415 aaKnown RBP22.93■■□□□ 1.26
NUP88-210ENST00000574867 CCDC9Q9Y3X0 531 aaKnown RBP22.93■■□□□ 1.26
NUP88-210ENST00000574867 SPATA31A1Q5TZJ5 1347 aa22.92■■□□□ 1.26
NUP88-210ENST00000574867 RGS17Q9UGC6 210 aaPredicted RBP22.92■■□□□ 1.26
NUP88-210ENST00000574867 WNK3Q9BYP7 1800 aa22.92■■□□□ 1.26
NUP88-210ENST00000574867 GLI3P10071 1580 aa22.92■■□□□ 1.26
NUP88-210ENST00000574867 GJD4Q96KN9 370 aaPredicted RBP22.9■■□□□ 1.26
NUP88-210ENST00000574867 NUDCQ9Y266 331 aa22.9■■□□□ 1.26
NUP88-210ENST00000574867 THRAP3Q9Y2W1 955 aaKnown RBP22.9■■□□□ 1.26
NUP88-210ENST00000574867 IGSF1Q8N6C5 1336 aa22.9■■□□□ 1.26
NUP88-210ENST00000574867 NBPF6Q5VWK0 638 aa22.89■■□□□ 1.25
NUP88-210ENST00000574867 NBPF4Q96M43 638 aa22.89■■□□□ 1.25
NUP88-210ENST00000574867 EYA1Q99502 592 aa22.89■■□□□ 1.25
NUP88-210ENST00000574867 TCP11L2Q8N4U5 519 aa22.88■■□□□ 1.25
NUP88-210ENST00000574867 USP35Q9P2H5 1018 aa22.87■■□□□ 1.25
NUP88-210ENST00000574867 RBM6P78332 1123 aaKnown RBP22.86■■□□□ 1.25
NUP88-210ENST00000574867 PARP4Q9UKK3 1724 aaKnown RBP22.86■■□□□ 1.25
NUP88-210ENST00000574867 BARGINQ6ZT62 677 aa22.86■■□□□ 1.25
NUP88-210ENST00000574867 KDRP35968 1356 aa22.85■■□□□ 1.25
NUP88-210ENST00000574867 U2SURPO15042 1029 aaKnown RBP22.85■■□□□ 1.25
NUP88-210ENST00000574867 MRS2Q9HD23 443 aa22.85■■□□□ 1.25
NUP88-210ENST00000574867 THSD7AQ9UPZ6 1657 aa22.84■■□□□ 1.25
NUP88-210ENST00000574867 PLEKHG2Q9H7P9 1386 aa22.84■■□□□ 1.25
NUP88-210ENST00000574867 USHBP1Q8N6Y0 703 aa22.84■■□□□ 1.25
NUP88-210ENST00000574867 DISP2A7MBM2 1401 aa22.84■■□□□ 1.25
NUP88-210ENST00000574867 POTEAQ6S8J7 498 aa22.83■■□□□ 1.25
NUP88-210ENST00000574867 CDCA7Q9BWT1 371 aaPredicted RBP22.83■■□□□ 1.25
NUP88-210ENST00000574867 CCER2I3L3R5 266 aa22.83■■□□□ 1.24
NUP88-210ENST00000574867 RXRBP28702 533 aa22.83■■□□□ 1.24
NUP88-210ENST00000574867 MEGF6O75095 1541 aa22.81■■□□□ 1.24
NUP88-210ENST00000574867 U2AF1L5P0DN76 240 aaPredicted RBP22.81■■□□□ 1.24
NUP88-210ENST00000574867 IL2RBP14784 551 aa22.81■■□□□ 1.24
NUP88-210ENST00000574867 U2AF1Q01081 240 aaKnown RBP eCLIP22.81■■□□□ 1.24
NUP88-210ENST00000574867 SULT6B1Q6IMI4 303 aa22.81■■□□□ 1.24
NUP88-210ENST00000574867 MIER1Q8N108 512 aa22.81■■□□□ 1.24
NUP88-210ENST00000574867 WDR43Q15061 677 aaKnown RBP eCLIP22.8■■□□□ 1.24
NUP88-210ENST00000574867 FAM98CQ17RN3 349 aaKnown RBP22.8■■□□□ 1.24
NUP88-210ENST00000574867 CCDC184Q52MB2 194 aa22.8■■□□□ 1.24
NUP88-210ENST00000574867 RAPGEF4Q8WZA2 1011 aa22.8■■□□□ 1.24
NUP88-210ENST00000574867 LRRC37A3O60309 1634 aa22.79■■□□□ 1.24
NUP88-210ENST00000574867 OVOS2A0A0G2JMS6 1433 aa22.79■■□□□ 1.24
NUP88-210ENST00000574867 ONECUT3O60422 494 aaPredicted RBP22.79■■□□□ 1.24
NUP88-210ENST00000574867 AEBP1Q8IUX7 1158 aa22.78■■□□□ 1.24
NUP88-210ENST00000574867 PKD1L3Q7Z443 1732 aa22.78■■□□□ 1.24
NUP88-210ENST00000574867 HMOX1P09601 288 aa22.77■■□□□ 1.24
NUP88-210ENST00000574867 TATP17735 454 aaPredicted RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms