RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TIMP2P16035 220 aa7.01□□□□□ -1.29
NUP88-209ENST00000574855 DZIP3Q86Y13 1208 aaKnown RBP7.01□□□□□ -1.29
NUP88-209ENST00000574855 CCDC116Q8IYX3 515 aa7.01□□□□□ -1.29
NUP88-209ENST00000574855 KIFC2Q96AC6 838 aa7.01□□□□□ -1.29
NUP88-209ENST00000574855 EMILIN1Q9Y6C2 1016 aa7.01□□□□□ -1.29
NUP88-209ENST00000574855 LOC100996750A0A140TA64 210 aa7□□□□□ -1.29
NUP88-209ENST00000574855 NBPF20Q3BBV1 942 aa7□□□□□ -1.29
NUP88-209ENST00000574855 ITPKCQ96DU7 683 aa7□□□□□ -1.29
NUP88-209ENST00000574855 KRTAP4-6Q9BYQ5 205 aa7□□□□□ -1.29
NUP88-209ENST00000574855 BMP1P13497 986 aa6.99□□□□□ -1.29
NUP88-209ENST00000574855 DHX9Q08211 1270 aaKnown RBP6.99□□□□□ -1.29
NUP88-209ENST00000574855 TRIM47Q96LD4 638 aa6.99□□□□□ -1.29
NUP88-209ENST00000574855 ZFAND3Q9H8U3 227 aa6.99□□□□□ -1.29
NUP88-209ENST00000574855 SCARF1Q14162 830 aa6.98□□□□□ -1.29
NUP88-209ENST00000574855 PPP1R26Q5T8A7 1209 aaPredicted RBP6.98□□□□□ -1.29
NUP88-209ENST00000574855 MRPL14Q6P1L8 145 aaKnown RBP6.98□□□□□ -1.29
NUP88-209ENST00000574855 TRIM46Q7Z4K8 759 aa6.98□□□□□ -1.29
NUP88-209ENST00000574855 ZNF592Q92610 1267 aa6.98□□□□□ -1.29
NUP88-209ENST00000574855 ZNF775Q96BV0 537 aaPredicted RBP6.98□□□□□ -1.29
NUP88-209ENST00000574855 PGPEP1Q9NXJ5 209 aa6.98□□□□□ -1.29
NUP88-209ENST00000574855 ZNF330Q9Y3S2 320 aaPredicted RBP6.98□□□□□ -1.29
NUP88-209ENST00000574855 UPP2O95045 317 aa6.97□□□□□ -1.29
NUP88-209ENST00000574855 FBXO45P0C2W1 286 aa6.97□□□□□ -1.29
NUP88-209ENST00000574855 MCCD1P59942 119 aaPredicted RBP6.97□□□□□ -1.29
NUP88-209ENST00000574855 NR1H3Q13133 447 aa6.97□□□□□ -1.29
NUP88-209ENST00000574855 SNRPBP14678 240 aaKnown RBP6.96□□□□□ -1.3
NUP88-209ENST00000574855 TRIM52Q96A61 297 aa6.96□□□□□ -1.3
NUP88-209ENST00000574855 ZFP42Q96MM3 310 aa6.96□□□□□ -1.3
NUP88-209ENST00000574855 PCDHB9Q9Y5E1 797 aa6.96□□□□□ -1.3
NUP88-209ENST00000574855 TMEM132AQ24JP5 1023 aa6.95□□□□□ -1.3
NUP88-209ENST00000574855 INTS6LQ5JSJ4 861 aaKnown RBP6.95□□□□□ -1.3
NUP88-209ENST00000574855 SEPT12Q8IYM1 358 aa6.95□□□□□ -1.3
NUP88-209ENST00000574855 RAB15P59190 212 aa6.94□□□□□ -1.3
NUP88-209ENST00000574855 PURBQ96QR8 312 aaKnown RBP6.94□□□□□ -1.3
NUP88-209ENST00000574855 TSEN34Q9BSV6 310 aaKnown RBP6.94□□□□□ -1.3
NUP88-209ENST00000574855 TBC1D2BQ9UPU7 963 aa6.94□□□□□ -1.3
NUP88-209ENST00000574855 ESPNB1AK53 854 aa6.93□□□□□ -1.3
NUP88-209ENST00000574855 GPR37L1O60883 481 aa6.93□□□□□ -1.3
NUP88-209ENST00000574855 BMP2P12643 396 aa6.93□□□□□ -1.3
NUP88-209ENST00000574855 CCDC125Q86Z20 511 aa6.93□□□□□ -1.3
NUP88-209ENST00000574855 MEIOBQ8N635 442 aa6.93□□□□□ -1.3
NUP88-209ENST00000574855 ERVH48-1M5A8F1 160 aa6.92□□□□□ -1.3
NUP88-209ENST00000574855 GIGYF1O75420 1035 aaPredicted RBP6.92□□□□□ -1.3
NUP88-209ENST00000574855 C6orf118Q5T5N4 469 aa6.92□□□□□ -1.3
NUP88-209ENST00000574855 RNF20Q5VTR2 975 aa6.92□□□□□ -1.3
NUP88-209ENST00000574855 Q6ZVU0 165 aa6.92□□□□□ -1.3
NUP88-209ENST00000574855 LINC00528Q8N1L1 170 aa6.92□□□□□ -1.3
NUP88-209ENST00000574855 GDPD2Q9HCC8 539 aa6.92□□□□□ -1.3
NUP88-209ENST00000574855 CBLBQ13191 982 aa6.91□□□□□ -1.3
NUP88-209ENST00000574855 MCM6Q14566 821 aa6.91□□□□□ -1.3
NUP88-209ENST00000574855 TMPRSS4Q9NRS4 437 aa6.91□□□□□ -1.3
NUP88-209ENST00000574855 ABL2P42684 1182 aa6.9□□□□□ -1.3
NUP88-209ENST00000574855 EIF4G2P78344 907 aaKnown RBP eCLIP6.9□□□□□ -1.3
NUP88-209ENST00000574855 ZNF784Q8NCA9 323 aaPredicted RBP6.9□□□□□ -1.3
NUP88-209ENST00000574855 MAN1A2O60476 641 aa6.89□□□□□ -1.31
NUP88-209ENST00000574855 FLIIQ13045 1269 aa6.89□□□□□ -1.31
NUP88-209ENST00000574855 IRF5Q13568 498 aa6.88□□□□□ -1.31
NUP88-209ENST00000574855 WASHC4Q2M389 1173 aa6.88□□□□□ -1.31
NUP88-209ENST00000574855 TREML4Q6UXN2 200 aa6.88□□□□□ -1.31
NUP88-209ENST00000574855 SOS2Q07890 1332 aaPredicted RBP6.87□□□□□ -1.31
NUP88-209ENST00000574855 TERTO14746 1132 aaKnown RBP6.87□□□□□ -1.31
NUP88-209ENST00000574855 LILRA1O75019 489 aa6.87□□□□□ -1.31
NUP88-209ENST00000574855 RELBQ01201 579 aa6.87□□□□□ -1.31
NUP88-209ENST00000574855 AGBL1Q96MI9 1066 aa6.87□□□□□ -1.31
NUP88-209ENST00000574855 ESF1Q9H501 851 aaKnown RBP6.87□□□□□ -1.31
NUP88-209ENST00000574855 CEP126Q9P2H0 1117 aa6.87□□□□□ -1.31
NUP88-209ENST00000574855 NXF1Q9UBU9 619 aaKnown RBP6.87□□□□□ -1.31
NUP88-209ENST00000574855 TTLL8A6PVC2 850 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 SPINT1O43278 529 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 RAD21O60216 631 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 ADD1P35611 737 aaKnown RBP6.86□□□□□ -1.31
NUP88-209ENST00000574855 VAC14Q08AM6 782 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 WWC1Q8IX03 1113 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 CYLDQ9NQC7 956 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 COG6Q9Y2V7 657 aa6.86□□□□□ -1.31
NUP88-209ENST00000574855 SOBPA7XYQ1 873 aa6.85□□□□□ -1.31
NUP88-209ENST00000574855 WFS1O76024 890 aa6.85□□□□□ -1.31
NUP88-209ENST00000574855 ADH1AP07327 375 aa6.85□□□□□ -1.31
NUP88-209ENST00000574855 SLC16A10Q8TF71 515 aa6.85□□□□□ -1.31
NUP88-209ENST00000574855 ZNF395Q9H8N7 513 aaPredicted RBP6.85□□□□□ -1.31
NUP88-209ENST00000574855 PCDHB11Q9Y5F2 797 aa6.85□□□□□ -1.31
NUP88-209ENST00000574855 UBTFP17480 764 aaKnown RBP6.84□□□□□ -1.31
NUP88-209ENST00000574855 ERVK-9P63128 1117 aa6.84□□□□□ -1.31
NUP88-209ENST00000574855 NFX1Q12986 1120 aaKnown RBP6.84□□□□□ -1.31
NUP88-209ENST00000574855 SEMA3FQ13275 785 aa6.84□□□□□ -1.31
NUP88-209ENST00000574855 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.84□□□□□ -1.31
NUP88-209ENST00000574855 CC2D2BQ6DHV5 1058 aa6.84□□□□□ -1.31
NUP88-209ENST00000574855 NPAS3Q8IXF0 933 aa6.84□□□□□ -1.31
NUP88-209ENST00000574855 FIGNL2A6NMB9 653 aa6.83□□□□□ -1.32
NUP88-209ENST00000574855 ATP5J2-PTCD1G3V325 749 aa6.83□□□□□ -1.32
NUP88-209ENST00000574855 SOX11P35716 441 aa6.83□□□□□ -1.32
NUP88-209ENST00000574855 PTGIRP43119 386 aa6.83□□□□□ -1.32
NUP88-209ENST00000574855 SLFNL1Q499Z3 407 aa6.83□□□□□ -1.32
NUP88-209ENST00000574855 INSM2Q96T92 566 aaPredicted RBP6.83□□□□□ -1.32
NUP88-209ENST00000574855 DNMT3LQ9UJW3 386 aa6.83□□□□□ -1.32
NUP88-209ENST00000574855 KDF1Q8NAX2 398 aaPredicted RBP6.82□□□□□ -1.32
NUP88-209ENST00000574855 POLMQ9NP87 494 aaPredicted RBP6.82□□□□□ -1.32
NUP88-209ENST00000574855 MYCP01106 439 aaPredicted RBP6.81□□□□□ -1.32
NUP88-209ENST00000574855 CTSOP43234 321 aaPredicted RBP6.81□□□□□ -1.32
NUP88-209ENST00000574855 SCTRP47872 440 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms