RNA–Protein interactions for RNA: ENST00000574701.5

LITAF-213, Transcript of lipopolysaccharide induced TNF factor, human

TSL 4

Gene LITAF, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LITAF-213	ENST00000574701	GLI3	P10071	1580 aa		33.37	■■■□□ 2.93
LITAF-213	ENST00000574701	ANKRD26	Q9UPS8	1709 aa		33.36	■■■□□ 2.93
LITAF-213	ENST00000574701	COL5A2	P05997	1499 aa	Predicted RBP	33.36	■■■□□ 2.93
LITAF-213	ENST00000574701	RGS12	O14924	1447 aa		33.34	■■■□□ 2.93
LITAF-213	ENST00000574701	KNSTRN	Q9Y448	316 aa		33.33	■■■□□ 2.93
LITAF-213	ENST00000574701	NSD2	O96028	1365 aa		33.33	■■■□□ 2.93
LITAF-213	ENST00000574701	RGPD5	Q99666	1765 aa		33.32	■■■□□ 2.92
LITAF-213	ENST00000574701	SPATA31A5	Q5VU36	1347 aa		33.28	■■■□□ 2.92
LITAF-213	ENST00000574701	SPATA31A7	Q8IWB4	1347 aa		33.28	■■■□□ 2.92
LITAF-213	ENST00000574701	LARP1	Q6PKG0	1096 aa	Known RBP	33.26	■■■□□ 2.91
LITAF-213	ENST00000574701	AXIN2	Q9Y2T1	843 aa		33.26	■■■□□ 2.91
LITAF-213	ENST00000574701	BLM	P54132	1417 aa	Predicted RBP	33.25	■■■□□ 2.91
LITAF-213	ENST00000574701	CRB1	P82279	1406 aa		33.25	■■■□□ 2.91
LITAF-213	ENST00000574701	MAP3K19	Q56UN5	1328 aa		33.25	■■■□□ 2.91
LITAF-213	ENST00000574701	SPATA31A1	Q5TZJ5	1347 aa		33.25	■■■□□ 2.91
LITAF-213	ENST00000574701	RTL1	A6NKG5	1358 aa		33.24	■■■□□ 2.91
LITAF-213	ENST00000574701	CSB-PGBD3	P0DP91	1061 aa		33.24	■■■□□ 2.91
LITAF-213	ENST00000574701	AMPH	P49418	695 aa		33.24	■■■□□ 2.91
LITAF-213	ENST00000574701	WDR17	Q8IZU2	1322 aa		33.23	■■■□□ 2.91
LITAF-213	ENST00000574701		A0A0G2JS52	829 aa		33.22	■■■□□ 2.91
LITAF-213	ENST00000574701	MYT1	Q01538	1121 aa		33.22	■■■□□ 2.91
LITAF-213	ENST00000574701	RRS1	Q15050	365 aa	Known RBP	33.22	■■■□□ 2.91
LITAF-213	ENST00000574701	FBLN1	P23142	703 aa		33.21	■■■□□ 2.91
LITAF-213	ENST00000574701	TOM1L2	Q6ZVM7	507 aa		33.21	■■■□□ 2.91
LITAF-213	ENST00000574701	USP35	Q9P2H5	1018 aa		33.21	■■■□□ 2.91
LITAF-213	ENST00000574701	FAM98C	Q17RN3	349 aa	Known RBP	33.2	■■■□□ 2.91
LITAF-213	ENST00000574701	IP6K1	Q92551	441 aa		33.2	■■■□□ 2.91
LITAF-213	ENST00000574701	ERBB3	P21860	1342 aa		33.18	■■■□□ 2.9
LITAF-213	ENST00000574701	FAM208A	Q9UK61	1670 aa	Known RBP	33.17	■■■□□ 2.9
LITAF-213	ENST00000574701	HOXC9	P31274	260 aa		33.17	■■■□□ 2.9
LITAF-213	ENST00000574701	TCP11L2	Q8N4U5	519 aa		33.17	■■■□□ 2.9
LITAF-213	ENST00000574701	KIF24	Q5T7B8	1368 aa		33.17	■■■□□ 2.9
LITAF-213	ENST00000574701	AMER1	Q5JTC6	1135 aa	Predicted RBP	33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	MORC1	Q86VD1	984 aa		33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	SEPT12	Q8IYM1	358 aa		33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	ANKRD24	Q8TF21	1146 aa		33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	THRAP3	Q9Y2W1	955 aa	Known RBP	33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	THSD7A	Q9UPZ6	1657 aa		33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	MAP2	P11137	1827 aa	Known RBP	33.16	■■■□□ 2.9
LITAF-213	ENST00000574701	PER1	O15534	1290 aa	Predicted RBP	33.15	■■■□□ 2.9
LITAF-213	ENST00000574701	FLT4	P35916	1363 aa		33.15	■■■□□ 2.9
LITAF-213	ENST00000574701	PEAK1	Q9H792	1746 aa		33.14	■■■□□ 2.9
LITAF-213	ENST00000574701	SOCS7	O14512	581 aa		33.14	■■■□□ 2.9
LITAF-213	ENST00000574701	ONECUT3	O60422	494 aa	Predicted RBP	33.14	■■■□□ 2.9
LITAF-213	ENST00000574701	TNNT2	P45379	298 aa	Predicted RBP	33.13	■■■□□ 2.89
LITAF-213	ENST00000574701	BARGIN	Q6ZT62	677 aa		33.13	■■■□□ 2.89
LITAF-213	ENST00000574701	SMG6	Q86US8	1419 aa	Known RBP	33.12	■■■□□ 2.89
LITAF-213	ENST00000574701	BRWD3	Q6RI45	1802 aa		33.12	■■■□□ 2.89
LITAF-213	ENST00000574701	WNK3	Q9BYP7	1800 aa		33.12	■■■□□ 2.89
LITAF-213	ENST00000574701	EMILIN1	Q9Y6C2	1016 aa		33.11	■■■□□ 2.89
LITAF-213	ENST00000574701	LTV1	Q96GA3	475 aa	Predicted RBP	33.1	■■■□□ 2.89
LITAF-213	ENST00000574701	CARD10	Q9BWT7	1032 aa		33.1	■■■□□ 2.89
LITAF-213	ENST00000574701	NPC1L1	Q9UHC9	1359 aa		33.09	■■■□□ 2.89
LITAF-213	ENST00000574701	PPM1G	O15355	546 aa	Predicted RBP	33.09	■■■□□ 2.89
LITAF-213	ENST00000574701	NLRP2	Q9NX02	1062 aa		33.09	■■■□□ 2.89
LITAF-213	ENST00000574701	CC2D1B	Q5T0F9	858 aa	Known RBP	33.08	■■■□□ 2.89
LITAF-213	ENST00000574701	INSR	P06213	1382 aa		33.08	■■■□□ 2.89
LITAF-213	ENST00000574701	PARP4	Q9UKK3	1724 aa	Known RBP	33.05	■■■□□ 2.88
LITAF-213	ENST00000574701	POLK	Q9UBT6	870 aa		33.05	■■■□□ 2.88
LITAF-213	ENST00000574701	HSP90AB2P	Q58FF8	381 aa		33.03	■■■□□ 2.88
LITAF-213	ENST00000574701	KRT27	Q7Z3Y8	459 aa		33.03	■■■□□ 2.88
LITAF-213	ENST00000574701	CDCA7	Q9BWT1	371 aa	Predicted RBP	33.02	■■■□□ 2.88
LITAF-213	ENST00000574701	CNGB1	Q14028	1251 aa	Predicted RBP	33.01	■■■□□ 2.87
LITAF-213	ENST00000574701	LRRC37A3	O60309	1634 aa		33	■■■□□ 2.87
LITAF-213	ENST00000574701	RGPD2	P0DJD1	1756 aa		33	■■■□□ 2.87
LITAF-213	ENST00000574701	DISP2	A7MBM2	1401 aa		32.97	■■■□□ 2.87
LITAF-213	ENST00000574701	PDE3B	Q13370	1112 aa		32.96	■■■□□ 2.87
LITAF-213	ENST00000574701	DDB1	Q16531	1140 aa		32.94	■■■□□ 2.86
LITAF-213	ENST00000574701	IL2RB	P14784	551 aa		32.93	■■■□□ 2.86
LITAF-213	ENST00000574701	DDX10	Q13206	875 aa	Known RBP	32.93	■■■□□ 2.86
LITAF-213	ENST00000574701	TNS2	Q63HR2	1409 aa		32.89	■■■□□ 2.86
LITAF-213	ENST00000574701	NBPF6	Q5VWK0	638 aa		32.89	■■■□□ 2.86
LITAF-213	ENST00000574701	NBPF4	Q96M43	638 aa		32.89	■■■□□ 2.86
LITAF-213	ENST00000574701	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.88	■■■□□ 2.85
LITAF-213	ENST00000574701	EXOC5	O00471	708 aa		32.86	■■■□□ 2.85
LITAF-213	ENST00000574701	EIF4A2	Q14240	407 aa	Known RBP	32.86	■■■□□ 2.85
LITAF-213	ENST00000574701	USHBP1	Q8N6Y0	703 aa		32.86	■■■□□ 2.85
LITAF-213	ENST00000574701	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.85	■■■□□ 2.85
LITAF-213	ENST00000574701	MTHFS	P49914	203 aa		32.85	■■■□□ 2.85
LITAF-213	ENST00000574701	FAM182B	Q5T319	152 aa		32.83	■■■□□ 2.85
LITAF-213	ENST00000574701	RAPGEF4	Q8WZA2	1011 aa		32.83	■■■□□ 2.85
LITAF-213	ENST00000574701	OVOS2	A0A0G2JMS6	1433 aa		32.83	■■■□□ 2.85
LITAF-213	ENST00000574701	FAM196A	Q6ZSG2	479 aa		32.82	■■■□□ 2.84
LITAF-213	ENST00000574701	MEGF6	O75095	1541 aa		32.82	■■■□□ 2.84
LITAF-213	ENST00000574701	NCAPD2	Q15021	1401 aa		32.8	■■■□□ 2.84
LITAF-213	ENST00000574701	EYA1	Q99502	592 aa		32.8	■■■□□ 2.84
LITAF-213	ENST00000574701	TAT	P17735	454 aa	Predicted RBP	32.79	■■■□□ 2.84
LITAF-213	ENST00000574701	RGPD1	P0DJD0	1748 aa		32.79	■■■□□ 2.84
LITAF-213	ENST00000574701	CCDC125	Q86Z20	511 aa		32.78	■■■□□ 2.84
LITAF-213	ENST00000574701	PARD3	Q8TEW0	1356 aa		32.76	■■■□□ 2.83
LITAF-213	ENST00000574701	SF3B2	Q13435	895 aa	Known RBP	32.76	■■■□□ 2.83
LITAF-213	ENST00000574701	IGSF1	Q8N6C5	1336 aa		32.76	■■■□□ 2.83
LITAF-213	ENST00000574701	PPP2R1A	P30153	589 aa		32.74	■■■□□ 2.83
LITAF-213	ENST00000574701	MARCH10	Q8NA82	808 aa	Predicted RBP	32.74	■■■□□ 2.83
LITAF-213	ENST00000574701	CFAP53	Q96M91	514 aa		32.73	■■■□□ 2.83
LITAF-213	ENST00000574701	SHANK3	Q9BYB0	1731 aa		32.72	■■■□□ 2.83
LITAF-213	ENST00000574701	DIAPH1	O60610	1272 aa	Known RBP	32.72	■■■□□ 2.83
LITAF-213	ENST00000574701	IL13	P35225	146 aa		32.72	■■■□□ 2.83
LITAF-213	ENST00000574701	ZCRB1	Q8TBF4	217 aa	Known RBP	32.72	■■■□□ 2.83
LITAF-213	ENST00000574701	COL3A1	P02461	1466 aa	Predicted RBP	32.71	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms