RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 CCDC7Q96M83 1385 aa15.16■□□□□ 0.02
CHD3-216ENST00000573936 FYB1O15117 783 aa15.16■□□□□ 0.02
CHD3-216ENST00000573936 RGPD1P0DJD0 1748 aa15.16■□□□□ 0.02
CHD3-216ENST00000573936 CGNL1Q0VF96 1302 aa15.16■□□□□ 0.02
CHD3-216ENST00000573936 LRP5O75197 1615 aa15.15■□□□□ 0.02
CHD3-216ENST00000573936 EN1Q05925 392 aaPredicted RBP15.15■□□□□ 0.02
CHD3-216ENST00000573936 CHRNA2Q15822 529 aa15.15■□□□□ 0.02
CHD3-216ENST00000573936 FAM182BQ5T319 152 aa15.15■□□□□ 0.02
CHD3-216ENST00000573936 TNS1Q9HBL0 1735 aaKnown RBP15.14■□□□□ 0.01
CHD3-216ENST00000573936 USP54Q70EL1 1684 aa15.14■□□□□ 0.01
CHD3-216ENST00000573936 OVOS2A0A0J9YW53 1432 aa15.14■□□□□ 0.01
CHD3-216ENST00000573936 OVOS2Q6IE36 1432 aa15.14■□□□□ 0.01
CHD3-216ENST00000573936 WASHC2AQ641Q2 1341 aa15.14■□□□□ 0.01
CHD3-216ENST00000573936 ZBTB7CA1YPR0 619 aa15.13■□□□□ 0.01
CHD3-216ENST00000573936 SOX12O15370 315 aa15.13■□□□□ 0.01
CHD3-216ENST00000573936 ARHGEF25Q86VW2 580 aa15.13■□□□□ 0.01
CHD3-216ENST00000573936 GGNBP2Q9H3C7 697 aa15.13■□□□□ 0.01
CHD3-216ENST00000573936 STRN4Q9NRL3 753 aa15.13■□□□□ 0.01
CHD3-216ENST00000573936 KNSTRNQ9Y448 316 aa15.13■□□□□ 0.01
CHD3-216ENST00000573936 AATKQ6ZMQ8 1374 aa15.12■□□□□ 0.01
CHD3-216ENST00000573936 EVA1CP58658 441 aa15.12■□□□□ 0.01
CHD3-216ENST00000573936 R3HDM1Q15032 1099 aaKnown RBP15.12■□□□□ 0.01
CHD3-216ENST00000573936 SPATA31A1Q5TZJ5 1347 aa15.11■□□□□ 0.01
CHD3-216ENST00000573936 LMO7Q8WWI1 1683 aa15.1■□□□□ 0.01
CHD3-216ENST00000573936 NFAT5O94916 1531 aa15.1■□□□□ 0.01
CHD3-216ENST00000573936 NSD2O96028 1365 aa15.1■□□□□ 0.01
CHD3-216ENST00000573936 USP35Q9P2H5 1018 aa15.09■□□□□ 0.01
CHD3-216ENST00000573936 FAM196AQ6ZSG2 479 aa15.08■□□□□ 0
CHD3-216ENST00000573936 CAMTA1Q9Y6Y1 1673 aa15.08■□□□□ 0
CHD3-216ENST00000573936 EZH2Q15910 746 aaKnown RBP15.07■□□□□ 0
CHD3-216ENST00000573936 KIF20BQ96Q89 1820 aa15.07■□□□□ 0
CHD3-216ENST00000573936 DISP2A7MBM2 1401 aa15.07■□□□□ 0
CHD3-216ENST00000573936 ABCC6O95255 1503 aa15.07■□□□□ 0
CHD3-216ENST00000573936 PER1O15534 1290 aaPredicted RBP15.06■□□□□ 0
CHD3-216ENST00000573936 TRIM37O94972 964 aa15.06■□□□□ 0
CHD3-216ENST00000573936 AMPHP49418 695 aa15.06■□□□□ 0
CHD3-216ENST00000573936 IP6K1Q92551 441 aa15.06■□□□□ 0
CHD3-216ENST00000573936 DCAF8L1A6NGE4 600 aa15.05■□□□□ -0
CHD3-216ENST00000573936 APBA3O96018 575 aa15.05■□□□□ -0
CHD3-216ENST00000573936 PDE3BQ13370 1112 aa15.05■□□□□ -0
CHD3-216ENST00000573936 LARP1Q6PKG0 1096 aaKnown RBP15.05■□□□□ -0
CHD3-216ENST00000573936 AXIN2Q9Y2T1 843 aa15.05■□□□□ -0
CHD3-216ENST00000573936 COL5A2P05997 1499 aaPredicted RBP15.04■□□□□ -0
CHD3-216ENST00000573936 MAP3K19Q56UN5 1328 aa15.04■□□□□ -0
CHD3-216ENST00000573936 AMER1Q5JTC6 1135 aaPredicted RBP15.04■□□□□ -0
CHD3-216ENST00000573936 NBPF14Q5TI25 921 aa15.04■□□□□ -0
CHD3-216ENST00000573936 MORC1Q86VD1 984 aa15.04■□□□□ -0
CHD3-216ENST00000573936 THRAP3Q9Y2W1 955 aaKnown RBP15.04■□□□□ -0
CHD3-216ENST00000573936 RTL1A6NKG5 1358 aa15.03■□□□□ -0
CHD3-216ENST00000573936 KIF24Q5T7B8 1368 aa15.03■□□□□ -0
CHD3-216ENST00000573936 WDR17Q8IZU2 1322 aa15.03■□□□□ -0
CHD3-216ENST00000573936 CSB-PGBD3P0DP91 1061 aa15.03■□□□□ -0
CHD3-216ENST00000573936 COL18A1P39060 1754 aa15.03■□□□□ -0
CHD3-216ENST00000573936 NPC1L1Q9UHC9 1359 aa15.02■□□□□ -0
CHD3-216ENST00000573936 FBLN1P23142 703 aa15.02■□□□□ -0
CHD3-216ENST00000573936 HOXC9P31274 260 aa15.02■□□□□ -0
CHD3-216ENST00000573936 RRS1Q15050 365 aaKnown RBP15.02■□□□□ -0
CHD3-216ENST00000573936 TOM1L2Q6ZVM7 507 aa15.02■□□□□ -0
CHD3-216ENST00000573936 CAMKK2Q96RR4 588 aa15.02■□□□□ -0
CHD3-216ENST00000573936 PARP4Q9UKK3 1724 aaKnown RBP15.02□□□□□ -0.01
CHD3-216ENST00000573936 CRB1P82279 1406 aa15.01□□□□□ -0.01
CHD3-216ENST00000573936 RREB1Q92766 1687 aa15.01□□□□□ -0.01
CHD3-216ENST00000573936 BARGINQ6ZT62 677 aa15.01□□□□□ -0.01
CHD3-216ENST00000573936 TCP11L2Q8N4U5 519 aa15.01□□□□□ -0.01
CHD3-216ENST00000573936 ANKRD24Q8TF21 1146 aa15.01□□□□□ -0.01
CHD3-216ENST00000573936 PPP1R1BQ9UD71 204 aaPredicted RBP15.01□□□□□ -0.01
CHD3-216ENST00000573936 ERBB3P21860 1342 aa15□□□□□ -0.01
CHD3-216ENST00000573936 YY1P25490 414 aa15□□□□□ -0.01
CHD3-216ENST00000573936 CARD10Q9BWT7 1032 aa15□□□□□ -0.01
CHD3-216ENST00000573936 NUP188Q5SRE5 1749 aa15□□□□□ -0.01
CHD3-216ENST00000573936 ANKRD26Q9UPS8 1709 aa15□□□□□ -0.01
CHD3-216ENST00000573936 LRRC37A3O60309 1634 aa14.99□□□□□ -0.01
CHD3-216ENST00000573936 FLT4P35916 1363 aa14.99□□□□□ -0.01
CHD3-216ENST00000573936 PARD3Q8TEW0 1356 aa14.99□□□□□ -0.01
CHD3-216ENST00000573936 LTN1O94822 1766 aa14.99□□□□□ -0.01
CHD3-216ENST00000573936 TNNT2P45379 298 aaPredicted RBP14.99□□□□□ -0.01
CHD3-216ENST00000573936 POLKQ9UBT6 870 aa14.99□□□□□ -0.01
CHD3-216ENST00000573936 PPM1GO15355 546 aaPredicted RBP14.98□□□□□ -0.01
CHD3-216ENST00000573936 CC2D1BQ5T0F9 858 aaKnown RBP14.98□□□□□ -0.01
CHD3-216ENST00000573936 EMILIN1Q9Y6C2 1016 aa14.98□□□□□ -0.01
CHD3-216ENST00000573936 WNK3Q9BYP7 1800 aa14.98□□□□□ -0.01
CHD3-216ENST00000573936 INSRP06213 1382 aa14.98□□□□□ -0.01
CHD3-216ENST00000573936 LTV1Q96GA3 475 aaPredicted RBP14.97□□□□□ -0.01
CHD3-216ENST00000573936 CDCA7Q9BWT1 371 aaPredicted RBP14.97□□□□□ -0.01
CHD3-216ENST00000573936 NLRP2Q9NX02 1062 aa14.97□□□□□ -0.01
CHD3-216ENST00000573936 SMG6Q86US8 1419 aaKnown RBP14.97□□□□□ -0.01
CHD3-216ENST00000573936 ZNF316A6NFI3 1004 aaPredicted RBP14.96□□□□□ -0.01
CHD3-216ENST00000573936 PEAK1Q9H792 1746 aa14.95□□□□□ -0.02
CHD3-216ENST00000573936 OVOS2A0A0G2JMS6 1433 aa14.95□□□□□ -0.02
CHD3-216ENST00000573936 DDX10Q13206 875 aaKnown RBP14.95□□□□□ -0.02
CHD3-216ENST00000573936 HSP90AB2PQ58FF8 381 aa14.95□□□□□ -0.02
CHD3-216ENST00000573936 SPON1Q9HCB6 807 aa14.95□□□□□ -0.02
CHD3-216ENST00000573936 RGPD5Q99666 1765 aa14.95□□□□□ -0.02
CHD3-216ENST00000573936 SBF2Q86WG5 1849 aa14.92□□□□□ -0.02
CHD3-216ENST00000573936 KCNQ2O43526 872 aa14.92□□□□□ -0.02
CHD3-216ENST00000573936 CNGB1Q14028 1251 aaPredicted RBP14.92□□□□□ -0.02
CHD3-216ENST00000573936 MAP2P11137 1827 aaKnown RBP14.92□□□□□ -0.02
CHD3-216ENST00000573936 FAM208AQ9UK61 1670 aaKnown RBP14.91□□□□□ -0.02
CHD3-216ENST00000573936 RGPD3A6NKT7 1758 aaPredicted RBP14.9□□□□□ -0.02
CHD3-216ENST00000573936 RGPD4Q7Z3J3 1758 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms