RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 COL18A1P39060 1754 aa17.36■□□□□ 0.37
CCDC40-210ENST00000573903 DDB1Q16531 1140 aa17.36■□□□□ 0.37
CCDC40-210ENST00000573903 WDR17Q8IZU2 1322 aa17.35■□□□□ 0.37
CCDC40-210ENST00000573903 KTN1Q86UP2 1357 aaKnown RBP17.35■□□□□ 0.37
CCDC40-210ENST00000573903 MON2Q7Z3U7 1717 aa17.35■□□□□ 0.37
CCDC40-210ENST00000573903 SOX12O15370 315 aa17.34■□□□□ 0.37
CCDC40-210ENST00000573903 CSB-PGBD3P0DP91 1061 aa17.34■□□□□ 0.37
CCDC40-210ENST00000573903 CDCA7Q9BWT1 371 aaPredicted RBP17.34■□□□□ 0.37
CCDC40-210ENST00000573903 RGPD5Q99666 1765 aa17.33■□□□□ 0.37
CCDC40-210ENST00000573903 PEAK1Q9H792 1746 aa17.33■□□□□ 0.37
CCDC40-210ENST00000573903 SBNO2Q9Y2G9 1366 aa17.33■□□□□ 0.36
CCDC40-210ENST00000573903 RGPD3A6NKT7 1758 aaPredicted RBP17.33■□□□□ 0.36
CCDC40-210ENST00000573903 RGPD4Q7Z3J3 1758 aa17.33■□□□□ 0.36
CCDC40-210ENST00000573903 ARHGEF25Q86VW2 580 aa17.32■□□□□ 0.36
CCDC40-210ENST00000573903 CARD11Q9BXL7 1154 aa17.32■□□□□ 0.36
CCDC40-210ENST00000573903 SBF2Q86WG5 1849 aa17.32■□□□□ 0.36
CCDC40-210ENST00000573903 ABCC6O95255 1503 aa17.31■□□□□ 0.36
CCDC40-210ENST00000573903 TONSLQ96HA7 1378 aa17.3■□□□□ 0.36
CCDC40-210ENST00000573903 TRIM26Q12899 539 aaPredicted RBP17.3■□□□□ 0.36
CCDC40-210ENST00000573903 AXIN2Q9Y2T1 843 aa17.3■□□□□ 0.36
CCDC40-210ENST00000573903 NFAT5O94916 1531 aa17.3■□□□□ 0.36
CCDC40-210ENST00000573903 CARD10Q9BWT7 1032 aa17.29■□□□□ 0.36
CCDC40-210ENST00000573903 CCDC7Q96M83 1385 aa17.28■□□□□ 0.36
CCDC40-210ENST00000573903 HDGFL2Q7Z4V5 671 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-210ENST00000573903 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.28■□□□□ 0.36
CCDC40-210ENST00000573903 TMC1Q8TDI8 760 aa17.28■□□□□ 0.36
CCDC40-210ENST00000573903 USP54Q70EL1 1684 aa17.28■□□□□ 0.36
CCDC40-210ENST00000573903 LTN1O94822 1766 aa17.26■□□□□ 0.35
CCDC40-210ENST00000573903 PLSCR1O15162 318 aa17.26■□□□□ 0.35
CCDC40-210ENST00000573903 BCL11BQ9C0K0 894 aaPredicted RBP17.26■□□□□ 0.35
CCDC40-210ENST00000573903 BCL9O00512 1426 aa17.25■□□□□ 0.35
CCDC40-210ENST00000573903 EXOC5O00471 708 aa17.25■□□□□ 0.35
CCDC40-210ENST00000573903 PPP1R1BQ9UD71 204 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-210ENST00000573903 USP31Q70CQ4 1352 aa17.25■□□□□ 0.35
CCDC40-210ENST00000573903 MARCH10Q8NA82 808 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-210ENST00000573903 SPON1Q9HCB6 807 aa17.24■□□□□ 0.35
CCDC40-210ENST00000573903 TERF2IPQ9NYB0 399 aa17.24■□□□□ 0.35
CCDC40-210ENST00000573903 TNS2Q63HR2 1409 aa17.23■□□□□ 0.35
CCDC40-210ENST00000573903 EDC4Q6P2E9 1401 aaKnown RBP17.23■□□□□ 0.35
CCDC40-210ENST00000573903 NME9Q86XW9 330 aa17.23■□□□□ 0.35
CCDC40-210ENST00000573903 CD163L1Q9NR16 1453 aa17.23■□□□□ 0.35
CCDC40-210ENST00000573903 KCNQ2O43526 872 aa17.21■□□□□ 0.35
CCDC40-210ENST00000573903 NLRP2Q9NX02 1062 aa17.21■□□□□ 0.35
CCDC40-210ENST00000573903 ERBB3P21860 1342 aa17.21■□□□□ 0.34
CCDC40-210ENST00000573903 SLC12A5Q9H2X9 1139 aa17.2■□□□□ 0.34
CCDC40-210ENST00000573903 A0A1W2PP64 1363 aa17.19■□□□□ 0.34
CCDC40-210ENST00000573903 NINLQ9Y2I6 1382 aa17.19■□□□□ 0.34
CCDC40-210ENST00000573903 DCAF8L1A6NGE4 600 aa17.19■□□□□ 0.34
CCDC40-210ENST00000573903 PUS7Q96PZ0 661 aaKnown RBP17.19■□□□□ 0.34
CCDC40-210ENST00000573903 NHSQ6T4R5 1651 aa17.19■□□□□ 0.34
CCDC40-210ENST00000573903 SLC24A1O60721 1099 aa17.18■□□□□ 0.34
CCDC40-210ENST00000573903 CASZ1Q86V15 1759 aa17.17■□□□□ 0.34
CCDC40-210ENST00000573903 FAM208AQ9UK61 1670 aaKnown RBP17.17■□□□□ 0.34
CCDC40-210ENST00000573903 IL2RBP14784 551 aa17.17■□□□□ 0.34
CCDC40-210ENST00000573903 PTF1AQ7RTS3 328 aa17.17■□□□□ 0.34
CCDC40-210ENST00000573903 ANKRD24Q8TF21 1146 aa17.17■□□□□ 0.34
CCDC40-210ENST00000573903 ANO8Q9HCE9 1232 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-210ENST00000573903 STK32BQ9NY57 414 aa17.17■□□□□ 0.34
CCDC40-210ENST00000573903 TXNRD1Q16881 649 aa17.15■□□□□ 0.34
CCDC40-210ENST00000573903 PROM2Q8N271 834 aa17.13■□□□□ 0.33
CCDC40-210ENST00000573903 ACSBG1Q96GR2 724 aa17.13■□□□□ 0.33
CCDC40-210ENST00000573903 COG3Q96JB2 828 aa17.13■□□□□ 0.33
CCDC40-210ENST00000573903 ST20-MTHFSA0A0A6YYL1 179 aa17.12■□□□□ 0.33
CCDC40-210ENST00000573903 KAT6BQ8WYB5 2073 aa17.12■□□□□ 0.33
CCDC40-210ENST00000573903 BTAF1O14981 1849 aa17.12■□□□□ 0.33
CCDC40-210ENST00000573903 SLC15A2Q16348 729 aa17.11■□□□□ 0.33
CCDC40-210ENST00000573903 IP6K1Q92551 441 aa17.11■□□□□ 0.33
CCDC40-210ENST00000573903 ZBTB7AO95365 584 aa17.1■□□□□ 0.33
CCDC40-210ENST00000573903 LTV1Q96GA3 475 aaPredicted RBP17.1■□□□□ 0.33
CCDC40-210ENST00000573903 TESK2Q96S53 571 aa17.1■□□□□ 0.33
CCDC40-210ENST00000573903 YY1P25490 414 aa17.09■□□□□ 0.33
CCDC40-210ENST00000573903 MYOM1P52179 1685 aa17.09■□□□□ 0.33
CCDC40-210ENST00000573903 ANKRD36BQ8N2N9 1353 aa17.08■□□□□ 0.32
CCDC40-210ENST00000573903 AMPHP49418 695 aa17.08■□□□□ 0.32
CCDC40-210ENST00000573903 TMF1P82094 1093 aa17.07■□□□□ 0.32
CCDC40-210ENST00000573903 PDGFDQ9GZP0 370 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-210ENST00000573903 MAP3K19Q56UN5 1328 aa17.06■□□□□ 0.32
CCDC40-210ENST00000573903 DDX54Q8TDD1 881 aaKnown RBP17.06■□□□□ 0.32
CCDC40-210ENST00000573903 MTFR1LQ9H019 292 aa17.06■□□□□ 0.32
CCDC40-210ENST00000573903 ATF5Q9Y2D1 282 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-210ENST00000573903 PAPPAQ13219 1627 aa17.06■□□□□ 0.32
CCDC40-210ENST00000573903 RTL1A6NKG5 1358 aa17.05■□□□□ 0.32
CCDC40-210ENST00000573903 USP47Q96K76 1375 aa17.05■□□□□ 0.32
CCDC40-210ENST00000573903 HOXC9P31274 260 aa17.05■□□□□ 0.32
CCDC40-210ENST00000573903 SMG6Q86US8 1419 aaKnown RBP17.04■□□□□ 0.32
CCDC40-210ENST00000573903 CDCA8Q53HL2 280 aa17.04■□□□□ 0.32
CCDC40-210ENST00000573903 RGPD2P0DJD1 1756 aa17.04■□□□□ 0.32
CCDC40-210ENST00000573903 DOT1LQ8TEK3 1739 aa17.04■□□□□ 0.32
CCDC40-210ENST00000573903 KIF20BQ96Q89 1820 aa17.03■□□□□ 0.32
CCDC40-210ENST00000573903 PTGER2P43116 358 aa17.03■□□□□ 0.32
CCDC40-210ENST00000573903 SYTL4Q96C24 671 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-210ENST00000573903 SLC27A3Q5K4L6 730 aa17.01■□□□□ 0.31
CCDC40-210ENST00000573903 QSER1Q2KHR3 1735 aa17■□□□□ 0.31
CCDC40-210ENST00000573903 ZCRB1Q8TBF4 217 aaKnown RBP17■□□□□ 0.31
CCDC40-210ENST00000573903 SHANK3Q9BYB0 1731 aa17■□□□□ 0.31
CCDC40-210ENST00000573903 PCGF6Q9BYE7 350 aa17■□□□□ 0.31
CCDC40-210ENST00000573903 GGNBP2Q9H3C7 697 aa17■□□□□ 0.31
CCDC40-210ENST00000573903 FBLN1P23142 703 aa16.99■□□□□ 0.31
CCDC40-210ENST00000573903 RRS1Q15050 365 aaKnown RBP16.99■□□□□ 0.31
CCDC40-210ENST00000573903 FHDC1Q9C0D6 1143 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms