RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 COL18A1P39060 1754 aa28.79■■■□□ 2.2
CCDC40-206ENST00000572083 CASZ1Q86V15 1759 aa28.79■■■□□ 2.2
CCDC40-206ENST00000572083 PLSCR1O15162 318 aa28.77■■■□□ 2.2
CCDC40-206ENST00000572083 AKAP12Q02952 1782 aa28.75■■■□□ 2.19
CCDC40-206ENST00000572083 UTRNP46939 3433 aa28.75■■■□□ 2.19
CCDC40-206ENST00000572083 DCAF8L1A6NGE4 600 aa28.74■■■□□ 2.19
CCDC40-206ENST00000572083 BCL11BQ9C0K0 894 aaPredicted RBP28.74■■■□□ 2.19
CCDC40-206ENST00000572083 AXIN2Q9Y2T1 843 aa28.74■■■□□ 2.19
CCDC40-206ENST00000572083 CPSF1Q10570 1443 aaKnown RBP28.74■■■□□ 2.19
CCDC40-206ENST00000572083 WDR17Q8IZU2 1322 aa28.73■■■□□ 2.19
CCDC40-206ENST00000572083 PDGFDQ9GZP0 370 aaPredicted RBP28.73■■■□□ 2.19
CCDC40-206ENST00000572083 MARCH10Q8NA82 808 aaPredicted RBP28.72■■■□□ 2.19
CCDC40-206ENST00000572083 MYOM1P52179 1685 aa28.7■■■□□ 2.19
CCDC40-206ENST00000572083 RGPD5Q99666 1765 aa28.7■■■□□ 2.18
CCDC40-206ENST00000572083 PROM2Q8N271 834 aa28.69■■■□□ 2.18
CCDC40-206ENST00000572083 SOX12O15370 315 aa28.68■■■□□ 2.18
CCDC40-206ENST00000572083 ZBTB7AO95365 584 aa28.68■■■□□ 2.18
CCDC40-206ENST00000572083 BCL9O00512 1426 aa28.67■■■□□ 2.18
CCDC40-206ENST00000572083 TRPM1Q7Z4N2 1603 aa28.66■■■□□ 2.18
CCDC40-206ENST00000572083 CDCA7Q9BWT1 371 aaPredicted RBP28.66■■■□□ 2.18
CCDC40-206ENST00000572083 ARHGEF25Q86VW2 580 aa28.65■■■□□ 2.18
CCDC40-206ENST00000572083 EVC2Q86UK5 1308 aa28.65■■■□□ 2.18
CCDC40-206ENST00000572083 CSB-PGBD3P0DP91 1061 aa28.64■■■□□ 2.18
CCDC40-206ENST00000572083 TTC21BQ7Z4L5 1316 aa28.64■■■□□ 2.17
CCDC40-206ENST00000572083 PTGER2P43116 358 aa28.62■■■□□ 2.17
CCDC40-206ENST00000572083 CARD10Q9BWT7 1032 aa28.62■■■□□ 2.17
CCDC40-206ENST00000572083 NFAT5O94916 1531 aa28.61■■■□□ 2.17
CCDC40-206ENST00000572083 TXNRD1Q16881 649 aa28.61■■■□□ 2.17
CCDC40-206ENST00000572083 KCNH5Q8NCM2 988 aa28.61■■■□□ 2.17
CCDC40-206ENST00000572083 ATF5Q9Y2D1 282 aaPredicted RBP28.61■■■□□ 2.17
CCDC40-206ENST00000572083 STK32BQ9NY57 414 aa28.6■■■□□ 2.17
CCDC40-206ENST00000572083 TNS2Q63HR2 1409 aa28.59■■■□□ 2.17
CCDC40-206ENST00000572083 EXOC5O00471 708 aa28.57■■■□□ 2.16
CCDC40-206ENST00000572083 SLC15A2Q16348 729 aa28.57■■■□□ 2.16
CCDC40-206ENST00000572083 NHSQ6T4R5 1651 aa28.56■■■□□ 2.16
CCDC40-206ENST00000572083 TTC21AQ8NDW8 1320 aa28.56■■■□□ 2.16
CCDC40-206ENST00000572083 L3MBTL2Q969R5 705 aa28.56■■■□□ 2.16
CCDC40-206ENST00000572083 CCDC7Q96M83 1385 aa28.56■■■□□ 2.16
CCDC40-206ENST00000572083 ZNF692Q9BU19 519 aaPredicted RBP28.56■■■□□ 2.16
CCDC40-206ENST00000572083 ABCC6O95255 1503 aa28.53■■■□□ 2.16
CCDC40-206ENST00000572083 FHDC1Q9C0D6 1143 aaPredicted RBP28.53■■■□□ 2.16
CCDC40-206ENST00000572083 KTN1Q86UP2 1357 aaKnown RBP28.52■■■□□ 2.16
CCDC40-206ENST00000572083 ROCK2O75116 1388 aaKnown RBP28.51■■■□□ 2.16
CCDC40-206ENST00000572083 ACSBG1Q96GR2 724 aa28.51■■■□□ 2.15
CCDC40-206ENST00000572083 MON2Q7Z3U7 1717 aa28.51■■■□□ 2.15
CCDC40-206ENST00000572083 SYT17Q9BSW7 474 aa28.5■■■□□ 2.15
CCDC40-206ENST00000572083 MTFR1LQ9H019 292 aa28.5■■■□□ 2.15
CCDC40-206ENST00000572083 ZNF784Q8NCA9 323 aaPredicted RBP28.49■■■□□ 2.15
CCDC40-206ENST00000572083 PAPPAQ13219 1627 aa28.48■■■□□ 2.15
CCDC40-206ENST00000572083 SGIP1Q9BQI5 828 aa28.47■■■□□ 2.15
CCDC40-206ENST00000572083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.46■■■□□ 2.15
CCDC40-206ENST00000572083 ERBB3P21860 1342 aa28.45■■■□□ 2.15
CCDC40-206ENST00000572083 LTN1O94822 1766 aa28.45■■■□□ 2.15
CCDC40-206ENST00000572083 NLRP2Q9NX02 1062 aa28.45■■■□□ 2.14
CCDC40-206ENST00000572083 BTAF1O14981 1849 aa28.45■■■□□ 2.14
CCDC40-206ENST00000572083 USP54Q70EL1 1684 aa28.45■■■□□ 2.14
CCDC40-206ENST00000572083 SIN3AQ96ST3 1273 aa28.42■■■□□ 2.14
CCDC40-206ENST00000572083 USP31Q70CQ4 1352 aa28.41■■■□□ 2.14
CCDC40-206ENST00000572083 NME9Q86XW9 330 aa28.41■■■□□ 2.14
CCDC40-206ENST00000572083 IL2RBP14784 551 aa28.4■■■□□ 2.14
CCDC40-206ENST00000572083 CD163L1Q9NR16 1453 aa28.4■■■□□ 2.14
CCDC40-206ENST00000572083 GOLGB1Q14789 3259 aaKnown RBP28.39■■■□□ 2.14
CCDC40-206ENST00000572083 ZNF827Q17R98 1081 aa28.39■■■□□ 2.14
CCDC40-206ENST00000572083 ARXQ96QS3 562 aa28.39■■■□□ 2.14
CCDC40-206ENST00000572083 CHD4Q14839 1912 aa28.39■■■□□ 2.13
CCDC40-206ENST00000572083 SBNO2Q9Y2G9 1366 aa28.37■■■□□ 2.13
CCDC40-206ENST00000572083 ANKRD24Q8TF21 1146 aa28.37■■■□□ 2.13
CCDC40-206ENST00000572083 NEUROD1Q13562 356 aa28.36■■■□□ 2.13
CCDC40-206ENST00000572083 LRRC4BQ9NT99 713 aa28.35■■■□□ 2.13
CCDC40-206ENST00000572083 MAP3K5Q99683 1374 aa28.34■■■□□ 2.13
CCDC40-206ENST00000572083 KAT6BQ8WYB5 2073 aa28.33■■■□□ 2.13
CCDC40-206ENST00000572083 TMC1Q8TDI8 760 aa28.32■■■□□ 2.12
CCDC40-206ENST00000572083 EDC4Q6P2E9 1401 aaKnown RBP28.29■■■□□ 2.12
CCDC40-206ENST00000572083 KLHL34Q8N239 644 aa28.29■■■□□ 2.12
CCDC40-206ENST00000572083 SENP3-EIF4A1A0A087X0R7 540 aa28.28■■■□□ 2.12
CCDC40-206ENST00000572083 HDGFL2Q7Z4V5 671 aaPredicted RBP28.28■■■□□ 2.12
CCDC40-206ENST00000572083 QSER1Q2KHR3 1735 aa28.28■■■□□ 2.12
CCDC40-206ENST00000572083 GPR162Q16538 588 aa28.27■■■□□ 2.12
CCDC40-206ENST00000572083 AKT1S1Q96B36 256 aa28.27■■■□□ 2.12
CCDC40-206ENST00000572083 SLC12A5Q9H2X9 1139 aa28.27■■■□□ 2.12
CCDC40-206ENST00000572083 A0A1W2PP64 1363 aa28.26■■■□□ 2.12
CCDC40-206ENST00000572083 DDX54Q8TDD1 881 aaKnown RBP28.26■■■□□ 2.11
CCDC40-206ENST00000572083 TUBGCP6Q96RT7 1819 aa28.26■■■□□ 2.11
CCDC40-206ENST00000572083 FAM208AQ9UK61 1670 aaKnown RBP28.26■■■□□ 2.11
CCDC40-206ENST00000572083 C1QTNF8P60827 252 aa28.25■■■□□ 2.11
CCDC40-206ENST00000572083 PNPLA7Q6ZV29 1317 aa28.24■■■□□ 2.11
CCDC40-206ENST00000572083 LTV1Q96GA3 475 aaPredicted RBP28.24■■■□□ 2.11
CCDC40-206ENST00000572083 DOT1LQ8TEK3 1739 aa28.23■■■□□ 2.11
CCDC40-206ENST00000572083 KCNQ4P56696 695 aa28.23■■■□□ 2.11
CCDC40-206ENST00000572083 CARD11Q9BXL7 1154 aa28.23■■■□□ 2.11
CCDC40-206ENST00000572083 POLD1P28340 1107 aa28.22■■■□□ 2.11
CCDC40-206ENST00000572083 COL24A1Q17RW2 1714 aa28.22■■■□□ 2.11
CCDC40-206ENST00000572083 SLC27A3Q5K4L6 730 aa28.22■■■□□ 2.11
CCDC40-206ENST00000572083 SYTL4Q96C24 671 aaPredicted RBP28.22■■■□□ 2.11
CCDC40-206ENST00000572083 PELP1Q8IZL8 1130 aaKnown RBP28.21■■■□□ 2.11
CCDC40-206ENST00000572083 SLC16A10Q8TF71 515 aa28.21■■■□□ 2.11
CCDC40-206ENST00000572083 IP6K1Q92551 441 aa28.21■■■□□ 2.11
CCDC40-206ENST00000572083 TERF2IPQ9NYB0 399 aa28.2■■■□□ 2.1
CCDC40-206ENST00000572083 TFCP2L1Q9NZI6 479 aa28.2■■■□□ 2.1
CCDC40-206ENST00000572083 LY75O60449 1722 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms