RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 USP19O94966 1318 aa16.22■□□□□ 0.19
VPS53-207ENST00000570510 PLEKHG3A1L390 1219 aa16.22■□□□□ 0.19
VPS53-207ENST00000570510 MARCH10Q8NA82 808 aaPredicted RBP16.22■□□□□ 0.19
VPS53-207ENST00000570510 RGPD3A6NKT7 1758 aaPredicted RBP16.22■□□□□ 0.19
VPS53-207ENST00000570510 RGPD4Q7Z3J3 1758 aa16.22■□□□□ 0.19
VPS53-207ENST00000570510 CHD4Q14839 1912 aa16.21■□□□□ 0.19
VPS53-207ENST00000570510 EXOC5O00471 708 aa16.21■□□□□ 0.19
VPS53-207ENST00000570510 CSB-PGBD3P0DP91 1061 aa16.21■□□□□ 0.19
VPS53-207ENST00000570510 NLRP6P59044 892 aa16.21■□□□□ 0.19
VPS53-207ENST00000570510 SRPK2P78362 688 aaKnown RBP16.2■□□□□ 0.18
VPS53-207ENST00000570510 STAC3Q96MF2 364 aa16.2■□□□□ 0.18
VPS53-207ENST00000570510 LMO7Q8WWI1 1683 aa16.19■□□□□ 0.18
VPS53-207ENST00000570510 AATKQ6ZMQ8 1374 aa16.18■□□□□ 0.18
VPS53-207ENST00000570510 POLD1P28340 1107 aa16.18■□□□□ 0.18
VPS53-207ENST00000570510 SGIP1Q9BQI5 828 aa16.17■□□□□ 0.18
VPS53-207ENST00000570510 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
VPS53-207ENST00000570510 PEAK1Q9H792 1746 aa16.16■□□□□ 0.18
VPS53-207ENST00000570510 LRRC37A3O60309 1634 aa16.16■□□□□ 0.18
VPS53-207ENST00000570510 SBF2Q86WG5 1849 aa16.15■□□□□ 0.18
VPS53-207ENST00000570510 MAP3K5Q99683 1374 aa16.14■□□□□ 0.17
VPS53-207ENST00000570510 BCL9O00512 1426 aa16.14■□□□□ 0.17
VPS53-207ENST00000570510 ACSBG1Q96GR2 724 aa16.14■□□□□ 0.17
VPS53-207ENST00000570510 PPIP5K1Q6PFW1 1433 aa16.13■□□□□ 0.17
VPS53-207ENST00000570510 SOX12O15370 315 aa16.13■□□□□ 0.17
VPS53-207ENST00000570510 BRD4O60885 1362 aaPredicted RBP16.13■□□□□ 0.17
VPS53-207ENST00000570510 CARD10Q9BWT7 1032 aa16.12■□□□□ 0.17
VPS53-207ENST00000570510 AXIN2Q9Y2T1 843 aa16.12■□□□□ 0.17
VPS53-207ENST00000570510 GRIN3BO60391 1043 aa16.11■□□□□ 0.17
VPS53-207ENST00000570510 CABP2Q9NPB3 220 aa16.11■□□□□ 0.17
VPS53-207ENST00000570510 KCNH5Q8NCM2 988 aa16.1■□□□□ 0.17
VPS53-207ENST00000570510 SLC16A10Q8TF71 515 aa16.1■□□□□ 0.17
VPS53-207ENST00000570510 CEP350Q5VT06 3117 aa16.1■□□□□ 0.17
VPS53-207ENST00000570510 ARHGEF28Q8N1W1 1705 aaKnown RBP16.09■□□□□ 0.17
VPS53-207ENST00000570510 AKAP12Q02952 1782 aa16.09■□□□□ 0.17
VPS53-207ENST00000570510 CABP1Q9NZU7 370 aa16.09■□□□□ 0.17
VPS53-207ENST00000570510 TFCP2L1Q9NZI6 479 aa16.08■□□□□ 0.16
VPS53-207ENST00000570510 TOPAZ1Q8N9V7 1692 aa16.08■□□□□ 0.16
VPS53-207ENST00000570510 GPBP1L1Q9HC44 474 aaPredicted RBP16.07■□□□□ 0.16
VPS53-207ENST00000570510 CCDC7Q96M83 1385 aa16.07■□□□□ 0.16
VPS53-207ENST00000570510 ZNF827Q17R98 1081 aa16.06■□□□□ 0.16
VPS53-207ENST00000570510 ARHGEF25Q86VW2 580 aa16.06■□□□□ 0.16
VPS53-207ENST00000570510 USP6P35125 1406 aa16.05■□□□□ 0.16
VPS53-207ENST00000570510 CPSF1Q10570 1443 aaKnown RBP16.05■□□□□ 0.16
VPS53-207ENST00000570510 MSH5O43196 834 aa16.05■□□□□ 0.16
VPS53-207ENST00000570510 NLRP2Q9NX02 1062 aa16.05■□□□□ 0.16
VPS53-207ENST00000570510 CENPJQ9HC77 1338 aaPredicted RBP16.04■□□□□ 0.16
VPS53-207ENST00000570510 NLGN2Q8NFZ4 835 aa16.04■□□□□ 0.16
VPS53-207ENST00000570510 SLIT3O75094 1523 aa16.04■□□□□ 0.16
VPS53-207ENST00000570510 TNS2Q63HR2 1409 aa16.03■□□□□ 0.16
VPS53-207ENST00000570510 HSPA6P17066 643 aa16.03■□□□□ 0.16
VPS53-207ENST00000570510 SLC27A3Q5K4L6 730 aa16.03■□□□□ 0.16
VPS53-207ENST00000570510 GOLGB1Q14789 3259 aaKnown RBP16.02■□□□□ 0.16
VPS53-207ENST00000570510 IL2RBP14784 551 aa16.02■□□□□ 0.16
VPS53-207ENST00000570510 ZNF526Q8TF50 670 aaPredicted RBP16.02■□□□□ 0.16
VPS53-207ENST00000570510 LRRC4BQ9NT99 713 aa16.02■□□□□ 0.16
VPS53-207ENST00000570510 ZNF692Q9BU19 519 aaPredicted RBP16.01■□□□□ 0.15
VPS53-207ENST00000570510 ATP10DQ9P241 1426 aa16.01■□□□□ 0.15
VPS53-207ENST00000570510 YBX3P16989 372 aaKnown RBP eCLIP16■□□□□ 0.15
VPS53-207ENST00000570510 AKT1S1Q96B36 256 aa16■□□□□ 0.15
VPS53-207ENST00000570510 SYTL4Q96C24 671 aaPredicted RBP16■□□□□ 0.15
VPS53-207ENST00000570510 WNK3Q9BYP7 1800 aa16■□□□□ 0.15
VPS53-207ENST00000570510 PNPLA7Q6ZV29 1317 aa15.99■□□□□ 0.15
VPS53-207ENST00000570510 SHANK3Q9BYB0 1731 aa15.99■□□□□ 0.15
VPS53-207ENST00000570510 RAB3GAP2Q9H2M9 1393 aa15.99■□□□□ 0.15
VPS53-207ENST00000570510 NHSQ6T4R5 1651 aa15.99■□□□□ 0.15
VPS53-207ENST00000570510 TTC21BQ7Z4L5 1316 aa15.98■□□□□ 0.15
VPS53-207ENST00000570510 NBPF1Q3BBV0 1214 aa15.98■□□□□ 0.15
VPS53-207ENST00000570510 DDX54Q8TDD1 881 aaKnown RBP15.98■□□□□ 0.15
VPS53-207ENST00000570510 KAT6BQ8WYB5 2073 aa15.98■□□□□ 0.15
VPS53-207ENST00000570510 COL18A1P39060 1754 aa15.98■□□□□ 0.15
VPS53-207ENST00000570510 EVC2Q86UK5 1308 aa15.97■□□□□ 0.15
VPS53-207ENST00000570510 TTC21AQ8NDW8 1320 aa15.96■□□□□ 0.15
VPS53-207ENST00000570510 PAPPAQ13219 1627 aa15.95■□□□□ 0.14
VPS53-207ENST00000570510 KCNQ4P56696 695 aa15.95■□□□□ 0.14
VPS53-207ENST00000570510 ABCC6O95255 1503 aa15.94■□□□□ 0.14
VPS53-207ENST00000570510 ERBB3P21860 1342 aa15.94■□□□□ 0.14
VPS53-207ENST00000570510 RGPD5Q99666 1765 aa15.93■□□□□ 0.14
VPS53-207ENST00000570510 PIK3C2AO00443 1686 aa15.93■□□□□ 0.14
VPS53-207ENST00000570510 ANKRD24Q8TF21 1146 aa15.93■□□□□ 0.14
VPS53-207ENST00000570510 BTAF1O14981 1849 aa15.93■□□□□ 0.14
VPS53-207ENST00000570510 TRPM1Q7Z4N2 1603 aa15.93■□□□□ 0.14
VPS53-207ENST00000570510 QRICH2Q9H0J4 1663 aa15.92■□□□□ 0.14
VPS53-207ENST00000570510 MSL1Q68DK7 614 aa15.92■□□□□ 0.14
VPS53-207ENST00000570510 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.92■□□□□ 0.14
VPS53-207ENST00000570510 CCNL1Q9UK58 526 aaPredicted RBP15.92■□□□□ 0.14
VPS53-207ENST00000570510 KTN1Q86UP2 1357 aaKnown RBP15.91■□□□□ 0.14
VPS53-207ENST00000570510 PRIM1P49642 420 aaKnown RBP15.91■□□□□ 0.14
VPS53-207ENST00000570510 CD2APQ9Y5K6 639 aa15.91■□□□□ 0.14
VPS53-207ENST00000570510 APLP1P51693 650 aa15.9■□□□□ 0.14
VPS53-207ENST00000570510 HMGB2P26583 209 aaKnown RBP15.89■□□□□ 0.13
VPS53-207ENST00000570510 KIAA1210Q9ULL0 1709 aa15.88■□□□□ 0.13
VPS53-207ENST00000570510 COL23A1Q86Y22 540 aaPredicted RBP15.88■□□□□ 0.13
VPS53-207ENST00000570510 LTV1Q96GA3 475 aaPredicted RBP15.87■□□□□ 0.13
VPS53-207ENST00000570510 WWC3Q9ULE0 1092 aa15.87■□□□□ 0.13
VPS53-207ENST00000570510 NFAT5O94916 1531 aa15.87■□□□□ 0.13
VPS53-207ENST00000570510 FLAD1Q8NFF5 587 aa15.86■□□□□ 0.13
VPS53-207ENST00000570510 USP47Q96K76 1375 aa15.86■□□□□ 0.13
VPS53-207ENST00000570510 QSER1Q2KHR3 1735 aa15.85■□□□□ 0.13
VPS53-207ENST00000570510 CAPN15O75808 1086 aa15.85■□□□□ 0.13
VPS53-207ENST00000570510 ANKRD36BQ8N2N9 1353 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms