RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 AATKQ6ZMQ8 1374 aa26.88■■□□□ 1.89
CLK3-227ENST00000570296 TXNRD1Q16881 649 aa26.88■■□□□ 1.89
CLK3-227ENST00000570296 ABTB2Q8N961 1025 aa26.87■■□□□ 1.89
CLK3-227ENST00000570296 GOLGB1Q14789 3259 aaKnown RBP26.86■■□□□ 1.89
CLK3-227ENST00000570296 GPR162Q16538 588 aa26.86■■□□□ 1.89
CLK3-227ENST00000570296 ACEP12821 1306 aa26.85■■□□□ 1.89
CLK3-227ENST00000570296 SHANK3Q9BYB0 1731 aa26.85■■□□□ 1.89
CLK3-227ENST00000570296 GCP02774 474 aa26.84■■□□□ 1.89
CLK3-227ENST00000570296 ARHGEF28Q8N1W1 1705 aaKnown RBP26.82■■□□□ 1.88
CLK3-227ENST00000570296 NLRP13Q86W25 1043 aa26.82■■□□□ 1.88
CLK3-227ENST00000570296 MARCH10Q8NA82 808 aaPredicted RBP26.82■■□□□ 1.88
CLK3-227ENST00000570296 CDCA7Q9BWT1 371 aaPredicted RBP26.81■■□□□ 1.88
CLK3-227ENST00000570296 PLEKHG3A1L390 1219 aa26.79■■□□□ 1.88
CLK3-227ENST00000570296 CCDC61Q9Y6R9 512 aa26.78■■□□□ 1.88
CLK3-227ENST00000570296 TOM1L2Q6ZVM7 507 aa26.77■■□□□ 1.88
CLK3-227ENST00000570296 PAPPAQ13219 1627 aa26.76■■□□□ 1.87
CLK3-227ENST00000570296 CDK19Q9BWU1 502 aa26.76■■□□□ 1.87
CLK3-227ENST00000570296 COL18A1P39060 1754 aa26.73■■□□□ 1.87
CLK3-227ENST00000570296 WDR17Q8IZU2 1322 aa26.72■■□□□ 1.87
CLK3-227ENST00000570296 NHSQ6T4R5 1651 aa26.72■■□□□ 1.87
CLK3-227ENST00000570296 BRD4O60885 1362 aaPredicted RBP26.71■■□□□ 1.87
CLK3-227ENST00000570296 SLIT3O75094 1523 aa26.7■■□□□ 1.87
CLK3-227ENST00000570296 COL24A1Q17RW2 1714 aa26.7■■□□□ 1.86
CLK3-227ENST00000570296 ZBTB7CA1YPR0 619 aa26.69■■□□□ 1.86
CLK3-227ENST00000570296 PELP1Q8IZL8 1130 aaKnown RBP26.68■■□□□ 1.86
CLK3-227ENST00000570296 QSER1Q2KHR3 1735 aa26.67■■□□□ 1.86
CLK3-227ENST00000570296 SLC16A10Q8TF71 515 aa26.66■■□□□ 1.86
CLK3-227ENST00000570296 EXOC5O00471 708 aa26.65■■□□□ 1.86
CLK3-227ENST00000570296 STAC3Q96MF2 364 aa26.65■■□□□ 1.86
CLK3-227ENST00000570296 GRIN3BO60391 1043 aa26.64■■□□□ 1.86
CLK3-227ENST00000570296 HSPA6P17066 643 aa26.64■■□□□ 1.86
CLK3-227ENST00000570296 POLD1P28340 1107 aa26.64■■□□□ 1.86
CLK3-227ENST00000570296 KLHL34Q8N239 644 aa26.64■■□□□ 1.86
CLK3-227ENST00000570296 CARD10Q9BWT7 1032 aa26.64■■□□□ 1.86
CLK3-227ENST00000570296 TNS2Q63HR2 1409 aa26.63■■□□□ 1.85
CLK3-227ENST00000570296 ZNF827Q17R98 1081 aa26.62■■□□□ 1.85
CLK3-227ENST00000570296 KDM2AQ9Y2K7 1162 aa26.62■■□□□ 1.85
CLK3-227ENST00000570296 AXIN2Q9Y2T1 843 aa26.62■■□□□ 1.85
CLK3-227ENST00000570296 NLRP6P59044 892 aa26.61■■□□□ 1.85
CLK3-227ENST00000570296 DCAF11Q8TEB1 546 aa26.61■■□□□ 1.85
CLK3-227ENST00000570296 PPIP5K1Q6PFW1 1433 aa26.61■■□□□ 1.85
CLK3-227ENST00000570296 ATP10DQ9P241 1426 aa26.61■■□□□ 1.85
CLK3-227ENST00000570296 RGPD5Q99666 1765 aa26.61■■□□□ 1.85
CLK3-227ENST00000570296 BTAF1O14981 1849 aa26.6■■□□□ 1.85
CLK3-227ENST00000570296 CPSF1Q10570 1443 aaKnown RBP26.6■■□□□ 1.85
CLK3-227ENST00000570296 TRPM1Q7Z4N2 1603 aa26.6■■□□□ 1.85
CLK3-227ENST00000570296 NLGN2Q8NFZ4 835 aa26.58■■□□□ 1.85
CLK3-227ENST00000570296 ABCC6O95255 1503 aa26.58■■□□□ 1.85
CLK3-227ENST00000570296 CCDC7Q96M83 1385 aa26.58■■□□□ 1.84
CLK3-227ENST00000570296 USP6P35125 1406 aa26.56■■□□□ 1.84
CLK3-227ENST00000570296 PIK3C2AO00443 1686 aa26.55■■□□□ 1.84
CLK3-227ENST00000570296 CSB-PGBD3P0DP91 1061 aa26.55■■□□□ 1.84
CLK3-227ENST00000570296 YBX3P16989 372 aaKnown RBP eCLIP26.55■■□□□ 1.84
CLK3-227ENST00000570296 AKT1S1Q96B36 256 aa26.55■■□□□ 1.84
CLK3-227ENST00000570296 GPBP1L1Q9HC44 474 aaPredicted RBP26.55■■□□□ 1.84
CLK3-227ENST00000570296 KAT6BQ8WYB5 2073 aa26.54■■□□□ 1.84
CLK3-227ENST00000570296 ACSBG1Q96GR2 724 aa26.54■■□□□ 1.84
CLK3-227ENST00000570296 ARHGEF25Q86VW2 580 aa26.53■■□□□ 1.84
CLK3-227ENST00000570296 LRRC4BQ9NT99 713 aa26.53■■□□□ 1.84
CLK3-227ENST00000570296 TUBGCP6Q96RT7 1819 aa26.51■■□□□ 1.83
CLK3-227ENST00000570296 SRPK2P78362 688 aaKnown RBP26.51■■□□□ 1.83
CLK3-227ENST00000570296 QRICH2Q9H0J4 1663 aa26.5■■□□□ 1.83
CLK3-227ENST00000570296 PNPLA7Q6ZV29 1317 aa26.5■■□□□ 1.83
CLK3-227ENST00000570296 SLC27A3Q5K4L6 730 aa26.49■■□□□ 1.83
CLK3-227ENST00000570296 ADCY9O60503 1353 aa26.48■■□□□ 1.83
CLK3-227ENST00000570296 KCNH5Q8NCM2 988 aa26.48■■□□□ 1.83
CLK3-227ENST00000570296 KIAA1210Q9ULL0 1709 aa26.46■■□□□ 1.83
CLK3-227ENST00000570296 CABP2Q9NPB3 220 aa26.44■■□□□ 1.82
CLK3-227ENST00000570296 TFCP2L1Q9NZI6 479 aa26.44■■□□□ 1.82
CLK3-227ENST00000570296 CABP1Q9NZU7 370 aa26.43■■□□□ 1.82
CLK3-227ENST00000570296 NFAT5O94916 1531 aa26.42■■□□□ 1.82
CLK3-227ENST00000570296 IL2RBP14784 551 aa26.38■■□□□ 1.81
CLK3-227ENST00000570296 ZNF526Q8TF50 670 aaPredicted RBP26.38■■□□□ 1.81
CLK3-227ENST00000570296 APLP1P51693 650 aa26.37■■□□□ 1.81
CLK3-227ENST00000570296 CENPJQ9HC77 1338 aaPredicted RBP26.37■■□□□ 1.81
CLK3-227ENST00000570296 SOX12O15370 315 aa26.36■■□□□ 1.81
CLK3-227ENST00000570296 LY75O60449 1722 aa26.35■■□□□ 1.81
CLK3-227ENST00000570296 TTC21BQ7Z4L5 1316 aa26.35■■□□□ 1.81
CLK3-227ENST00000570296 ERBB3P21860 1342 aa26.34■■□□□ 1.81
CLK3-227ENST00000570296 NLRP2Q9NX02 1062 aa26.33■■□□□ 1.81
CLK3-227ENST00000570296 CD2APQ9Y5K6 639 aa26.33■■□□□ 1.81
CLK3-227ENST00000570296 TTC21AQ8NDW8 1320 aa26.33■■□□□ 1.81
CLK3-227ENST00000570296 KIF3CO14782 793 aa26.31■■□□□ 1.8
CLK3-227ENST00000570296 ZNF692Q9BU19 519 aaPredicted RBP26.31■■□□□ 1.8
CLK3-227ENST00000570296 DNAJC5GQ8N7S2 189 aa26.3■■□□□ 1.8
CLK3-227ENST00000570296 MSH5O43196 834 aa26.27■■□□□ 1.8
CLK3-227ENST00000570296 KCNQ4P56696 695 aa26.27■■□□□ 1.8
CLK3-227ENST00000570296 COL23A1Q86Y22 540 aaPredicted RBP26.27■■□□□ 1.8
CLK3-227ENST00000570296 NBPF1Q3BBV0 1214 aa26.26■■□□□ 1.79
CLK3-227ENST00000570296 LTN1O94822 1766 aa26.25■■□□□ 1.79
CLK3-227ENST00000570296 RAB3GAP2Q9H2M9 1393 aa26.24■■□□□ 1.79
CLK3-227ENST00000570296 ANKRD36BQ8N2N9 1353 aa26.23■■□□□ 1.79
CLK3-227ENST00000570296 DOT1LQ8TEK3 1739 aa26.23■■□□□ 1.79
CLK3-227ENST00000570296 USP54Q70EL1 1684 aa26.23■■□□□ 1.79
CLK3-227ENST00000570296 MSL1Q68DK7 614 aa26.23■■□□□ 1.79
CLK3-227ENST00000570296 CCNL1Q9UK58 526 aaPredicted RBP26.22■■□□□ 1.79
CLK3-227ENST00000570296 EVC2Q86UK5 1308 aa26.21■■□□□ 1.79
CLK3-227ENST00000570296 DDX54Q8TDD1 881 aaKnown RBP26.21■■□□□ 1.79
CLK3-227ENST00000570296 PRIM1P49642 420 aaKnown RBP26.2■■□□□ 1.78
CLK3-227ENST00000570296 ANKRD24Q8TF21 1146 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms