RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 G3V3G9 751 aa10.63□□□□□ -0.71
VPS39-213ENST00000570062 KCNA6P17658 529 aa10.63□□□□□ -0.71
VPS39-213ENST00000570062 NPHP4O75161 1426 aaPredicted RBP10.63□□□□□ -0.71
VPS39-213ENST00000570062 ROBO2Q9HCK4 1378 aa10.63□□□□□ -0.71
VPS39-213ENST00000570062 PDE3BQ13370 1112 aa10.62□□□□□ -0.71
VPS39-213ENST00000570062 CNGB1Q14028 1251 aaPredicted RBP10.62□□□□□ -0.71
VPS39-213ENST00000570062 POLR3AO14802 1390 aaPredicted RBP10.62□□□□□ -0.71
VPS39-213ENST00000570062 PLEKHH1Q9ULM0 1364 aa10.62□□□□□ -0.71
VPS39-213ENST00000570062 STRCQ7RTU9 1775 aa10.62□□□□□ -0.71
VPS39-213ENST00000570062 USP32Q8NFA0 1604 aa10.62□□□□□ -0.71
VPS39-213ENST00000570062 CCDC184Q52MB2 194 aa10.61□□□□□ -0.71
VPS39-213ENST00000570062 PNNQ9H307 717 aaKnown RBP10.61□□□□□ -0.71
VPS39-213ENST00000570062 BOLA1Q9Y3E2 137 aa10.61□□□□□ -0.71
VPS39-213ENST00000570062 A0A1W2PP64 1363 aa10.61□□□□□ -0.71
VPS39-213ENST00000570062 ADGRB2O60241 1585 aa10.6□□□□□ -0.71
VPS39-213ENST00000570062 EDC4Q6P2E9 1401 aaKnown RBP10.6□□□□□ -0.71
VPS39-213ENST00000570062 PPIP5K1Q6PFW1 1433 aa10.6□□□□□ -0.71
VPS39-213ENST00000570062 ANKARQ7Z5J8 1434 aa10.6□□□□□ -0.71
VPS39-213ENST00000570062 NUDCQ9Y266 331 aa10.6□□□□□ -0.71
VPS39-213ENST00000570062 MYOM1P52179 1685 aa10.6□□□□□ -0.71
VPS39-213ENST00000570062 CPSF1Q10570 1443 aaKnown RBP10.59□□□□□ -0.71
VPS39-213ENST00000570062 PTPRUQ92729 1446 aa10.59□□□□□ -0.71
VPS39-213ENST00000570062 NCOA3Q9Y6Q9 1424 aa10.59□□□□□ -0.71
VPS39-213ENST00000570062 FYB1O15117 783 aa10.58□□□□□ -0.72
VPS39-213ENST00000570062 EMP3P54852 163 aa10.58□□□□□ -0.72
VPS39-213ENST00000570062 TTC21AQ8NDW8 1320 aa10.58□□□□□ -0.72
VPS39-213ENST00000570062 LTBP4Q8N2S1 1624 aa10.57□□□□□ -0.72
VPS39-213ENST00000570062 COG3Q96JB2 828 aa10.56□□□□□ -0.72
VPS39-213ENST00000570062 IQSEC2Q5JU85 1478 aa10.55□□□□□ -0.72
VPS39-213ENST00000570062 CD163L1Q9NR16 1453 aa10.55□□□□□ -0.72
VPS39-213ENST00000570062 NEFLP07196 543 aa10.55□□□□□ -0.72
VPS39-213ENST00000570062 EFCAB3Q8N7B9 438 aa10.55□□□□□ -0.72
VPS39-213ENST00000570062 NCKAP5LQ9HCH0 1330 aa10.55□□□□□ -0.72
VPS39-213ENST00000570062 AATKQ6ZMQ8 1374 aa10.54□□□□□ -0.72
VPS39-213ENST00000570062 MTHFSP49914 203 aa10.54□□□□□ -0.72
VPS39-213ENST00000570062 CDC42BPGQ6DT37 1551 aa10.54□□□□□ -0.72
VPS39-213ENST00000570062 SPNS2Q8IVW8 549 aa10.54□□□□□ -0.72
VPS39-213ENST00000570062 XRN1Q8IZH2 1706 aaKnown RBP10.54□□□□□ -0.72
VPS39-213ENST00000570062 NGDNQ8NEJ9 315 aaKnown RBP10.54□□□□□ -0.72
VPS39-213ENST00000570062 ADAMTS8Q9UP79 889 aa10.54□□□□□ -0.72
VPS39-213ENST00000570062 ACEP12821 1306 aa10.54□□□□□ -0.72
VPS39-213ENST00000570062 BLMP54132 1417 aaPredicted RBP10.53□□□□□ -0.72
VPS39-213ENST00000570062 ERICH6BQ5W0A0 696 aa10.53□□□□□ -0.72
VPS39-213ENST00000570062 C14orf37Q86TY3 774 aa10.53□□□□□ -0.72
VPS39-213ENST00000570062 PROSER2Q86WR7 435 aaPredicted RBP10.53□□□□□ -0.72
VPS39-213ENST00000570062 GGNBP2Q9H3C7 697 aa10.53□□□□□ -0.72
VPS39-213ENST00000570062 C19orf44Q9H6X5 657 aa10.53□□□□□ -0.72
VPS39-213ENST00000570062 NKTRP30414 1462 aaKnown RBP10.53□□□□□ -0.72
VPS39-213ENST00000570062 PRR36Q9H6K5 1346 aa10.53□□□□□ -0.72
VPS39-213ENST00000570062 ADGRL3Q9HAR2 1447 aa10.52□□□□□ -0.73
VPS39-213ENST00000570062 NEFMP07197 916 aa10.52□□□□□ -0.73
VPS39-213ENST00000570062 MMRN1Q13201 1228 aa10.52□□□□□ -0.73
VPS39-213ENST00000570062 TTC21BQ7Z4L5 1316 aa10.52□□□□□ -0.73
VPS39-213ENST00000570062 FAM205CA6NFA0 338 aa10.51□□□□□ -0.73
VPS39-213ENST00000570062 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.51□□□□□ -0.73
VPS39-213ENST00000570062 GTF3C3Q9Y5Q9 886 aa10.51□□□□□ -0.73
VPS39-213ENST00000570062 USP6P35125 1406 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 SMG6Q86US8 1419 aaKnown RBP10.5□□□□□ -0.73
VPS39-213ENST00000570062 DIAPH1O60610 1272 aaKnown RBP10.5□□□□□ -0.73
VPS39-213ENST00000570062 RUNDC1Q96C34 613 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 HS3ST6Q96QI5 342 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 PHF8Q9UPP1 1060 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 USP31Q70CQ4 1352 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 PNPLA6Q8IY17 1366 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 DCCP43146 1447 aa10.5□□□□□ -0.73
VPS39-213ENST00000570062 NWD1Q149M9 1564 aa10.49□□□□□ -0.73
VPS39-213ENST00000570062 ATF3P18847 181 aa10.49□□□□□ -0.73
VPS39-213ENST00000570062 TNNT2P45379 298 aaPredicted RBP10.49□□□□□ -0.73
VPS39-213ENST00000570062 CADPS2Q86UW7 1296 aa10.49□□□□□ -0.73
VPS39-213ENST00000570062 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.49□□□□□ -0.73
VPS39-213ENST00000570062 KIF24Q5T7B8 1368 aa10.49□□□□□ -0.73
VPS39-213ENST00000570062 RIOK3O14730 519 aaKnown RBP10.48□□□□□ -0.73
VPS39-213ENST00000570062 FCHSD2O94868 740 aa10.48□□□□□ -0.73
VPS39-213ENST00000570062 HOXB3P14651 431 aaPredicted RBP10.48□□□□□ -0.73
VPS39-213ENST00000570062 CCDC27Q2M243 656 aa10.48□□□□□ -0.73
VPS39-213ENST00000570062 CHD2O14647 1828 aaKnown RBP10.48□□□□□ -0.73
VPS39-213ENST00000570062 SSH2Q76I76 1423 aa10.48□□□□□ -0.73
VPS39-213ENST00000570062 POTEB3A0JP26 581 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 UBAP1LF5GYI3 381 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 U2AF1L5P0DN76 240 aaPredicted RBP10.47□□□□□ -0.73
VPS39-213ENST00000570062 U2AF1Q01081 240 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS39-213ENST00000570062 PSME1Q06323 249 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 POTEBQ6S5H4 581 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 NME9Q86XW9 330 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 ZNF710Q8N1W2 664 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 POLKQ9UBT6 870 aa10.47□□□□□ -0.73
VPS39-213ENST00000570062 ESCO1Q5FWF5 840 aa10.46□□□□□ -0.73
VPS39-213ENST00000570062 KCNH5Q8NCM2 988 aa10.46□□□□□ -0.73
VPS39-213ENST00000570062 PMFBP1Q8TBY8 1022 aa10.46□□□□□ -0.73
VPS39-213ENST00000570062 ITSN1Q15811 1721 aa10.46□□□□□ -0.74
VPS39-213ENST00000570062 MAPK8IP3Q9UPT6 1336 aa10.45□□□□□ -0.74
VPS39-213ENST00000570062 NUTM2FA1L443 756 aa10.45□□□□□ -0.74
VPS39-213ENST00000570062 SOX12O15370 315 aa10.45□□□□□ -0.74
VPS39-213ENST00000570062 WDR63Q8IWG1 891 aa10.45□□□□□ -0.74
VPS39-213ENST00000570062 RNF25Q96BH1 459 aaPredicted RBP10.45□□□□□ -0.74
VPS39-213ENST00000570062 MSH6P52701 1360 aa10.44□□□□□ -0.74
VPS39-213ENST00000570062 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.44□□□□□ -0.74
VPS39-213ENST00000570062 E9PSI1 815 aa10.44□□□□□ -0.74
VPS39-213ENST00000570062 NLRP6P59044 892 aa10.44□□□□□ -0.74
VPS39-213ENST00000570062 CALD1Q05682 793 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms