RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 USP17L18D6R9N7 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L22D6RA61 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L17D6RBQ6 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L19D6RCP7 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L20D6RJB6 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L24Q0WX57 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 PLEKHM2Q8IWE5 1019 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 IL21Q9HBE4 155 aa10.14□□□□□ -0.79
UBR1-208ENST00000569066 PPEF1O14829 653 aaPredicted RBP10.14□□□□□ -0.79
UBR1-208ENST00000569066 PDE4CQ08493 712 aa10.14□□□□□ -0.79
UBR1-208ENST00000569066 NYAP1Q6ZVC0 841 aa10.14□□□□□ -0.79
UBR1-208ENST00000569066 ZNF594Q96JF6 807 aaPredicted RBP10.14□□□□□ -0.79
UBR1-208ENST00000569066 CCDC85AQ96PX6 553 aaPredicted RBP10.14□□□□□ -0.79
UBR1-208ENST00000569066 RASA1P20936 1047 aa10.13□□□□□ -0.79
UBR1-208ENST00000569066 PTK7Q13308 1070 aa10.13□□□□□ -0.79
UBR1-208ENST00000569066 TRAF7Q6Q0C0 670 aa10.13□□□□□ -0.79
UBR1-208ENST00000569066 MFAP1P55081 439 aaKnown RBP10.13□□□□□ -0.79
UBR1-208ENST00000569066 CLDN10P78369 228 aa10.13□□□□□ -0.79
UBR1-208ENST00000569066 AGERQ15109 404 aa10.13□□□□□ -0.79
UBR1-208ENST00000569066 ERFEQ4G0M1 354 aa10.13□□□□□ -0.79
UBR1-208ENST00000569066 KCNA1Q09470 495 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 MTMR7Q9Y216 660 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 FAM196BA6NMK8 535 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 GIGYF1O75420 1035 aaPredicted RBP10.12□□□□□ -0.79
UBR1-208ENST00000569066 SCNN1AP37088 669 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 ELOAQ14241 798 aaKnown RBP10.12□□□□□ -0.79
UBR1-208ENST00000569066 PHLDB3Q6NSJ2 640 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 DZIP3Q86Y13 1208 aaKnown RBP10.12□□□□□ -0.79
UBR1-208ENST00000569066 ZNF511Q8NB15 262 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 KIAA1024Q9UPX6 916 aa10.12□□□□□ -0.79
UBR1-208ENST00000569066 MYT1LQ9UL68 1186 aa10.11□□□□□ -0.79
UBR1-208ENST00000569066 CHIC2Q9UKJ5 165 aa10.1□□□□□ -0.79
UBR1-208ENST00000569066 FAM69CQ0P6D2 419 aa10.1□□□□□ -0.79
UBR1-208ENST00000569066 OGFOD1Q8N543 542 aa10.1□□□□□ -0.79
UBR1-208ENST00000569066 CDCA7Q9BWT1 371 aaPredicted RBP10.1□□□□□ -0.79
UBR1-208ENST00000569066 OXLD1Q5BKU9 147 aa10.09□□□□□ -0.79
UBR1-208ENST00000569066 CDAN1Q8IWY9 1227 aa10.09□□□□□ -0.79
UBR1-208ENST00000569066 RGS22Q8NE09 1264 aa10.09□□□□□ -0.79
UBR1-208ENST00000569066 FOXD4L5Q5VV16 416 aaPredicted RBP10.09□□□□□ -0.79
UBR1-208ENST00000569066 FOXD4L4Q8WXT5 416 aaPredicted RBP10.09□□□□□ -0.79
UBR1-208ENST00000569066 LGR5O75473 907 aa10.08□□□□□ -0.8
UBR1-208ENST00000569066 PLA2G2CQ5R387 149 aa10.08□□□□□ -0.8
UBR1-208ENST00000569066 BPHLQ86WA6 291 aaPredicted RBP10.08□□□□□ -0.8
UBR1-208ENST00000569066 DOLKQ9UPQ8 538 aa10.08□□□□□ -0.8
UBR1-208ENST00000569066 SH3BP2P78314 561 aa10.07□□□□□ -0.8
UBR1-208ENST00000569066 DPYDQ12882 1025 aa10.07□□□□□ -0.8
UBR1-208ENST00000569066 EML3Q32P44 896 aa10.07□□□□□ -0.8
UBR1-208ENST00000569066 ZNF428Q96B54 188 aa10.07□□□□□ -0.8
UBR1-208ENST00000569066 ATP5J2-PTCD1G3V325 749 aa10.07□□□□□ -0.8
UBR1-208ENST00000569066 LARP1Q6PKG0 1096 aaKnown RBP10.07□□□□□ -0.8
UBR1-208ENST00000569066 RAB15P59190 212 aa10.06□□□□□ -0.8
UBR1-208ENST00000569066 SLC10A4Q96EP9 437 aa10.06□□□□□ -0.8
UBR1-208ENST00000569066 ANKMY2Q8IV38 441 aa10.05□□□□□ -0.8
UBR1-208ENST00000569066 POTEGQ6S5H5 508 aa10.05□□□□□ -0.8
UBR1-208ENST00000569066 MAP7D1Q3KQU3 841 aa10.04□□□□□ -0.8
UBR1-208ENST00000569066 FAM200AQ8TCP9 573 aa10.04□□□□□ -0.8
UBR1-208ENST00000569066 DKK1O94907 266 aa10.04□□□□□ -0.8
UBR1-208ENST00000569066 ZNF592Q92610 1267 aa10.03□□□□□ -0.8
UBR1-208ENST00000569066 RNF223E7ERA6 249 aa10.03□□□□□ -0.8
UBR1-208ENST00000569066 SSFA2P28290 1259 aa10.03□□□□□ -0.8
UBR1-208ENST00000569066 RANGAP1P46060 587 aaPredicted RBP10.03□□□□□ -0.8
UBR1-208ENST00000569066 MCCD1P59942 119 aaPredicted RBP10.03□□□□□ -0.8
UBR1-208ENST00000569066 C1QTNF2Q9BXJ5 285 aa10.03□□□□□ -0.8
UBR1-208ENST00000569066 DNAAF2Q9NVR5 837 aaKnown RBP10.03□□□□□ -0.8
UBR1-208ENST00000569066 ZBTB7BO15156 539 aaPredicted RBP10.02□□□□□ -0.81
UBR1-208ENST00000569066 GTF2IP78347 998 aa10.02□□□□□ -0.81
UBR1-208ENST00000569066 NOD1Q9Y239 953 aa10.02□□□□□ -0.81
UBR1-208ENST00000569066 SKOR1P84550 965 aa10.02□□□□□ -0.81
UBR1-208ENST00000569066 PCDHB11Q9Y5F2 797 aa10.02□□□□□ -0.81
UBR1-208ENST00000569066 PATL2C9JE40 543 aaKnown RBP10.01□□□□□ -0.81
UBR1-208ENST00000569066 SND1Q7KZF4 910 aaKnown RBP eCLIP10.01□□□□□ -0.81
UBR1-208ENST00000569066 TRIM32Q13049 653 aa10□□□□□ -0.81
UBR1-208ENST00000569066 TPCN2Q8NHX9 752 aa10□□□□□ -0.81
UBR1-208ENST00000569066 SFI1A8K8P3 1242 aa10□□□□□ -0.81
UBR1-208ENST00000569066 SCTRP47872 440 aa10□□□□□ -0.81
UBR1-208ENST00000569066 SERPINB4P48594 390 aa10□□□□□ -0.81
UBR1-208ENST00000569066 NBPF20Q3BBV1 942 aa10□□□□□ -0.81
UBR1-208ENST00000569066 TXNDC2Q86VQ3 553 aa10□□□□□ -0.81
UBR1-208ENST00000569066 PRMT3O60678 531 aa9.99□□□□□ -0.81
UBR1-208ENST00000569066 CLP1Q92989 425 aaKnown RBP9.99□□□□□ -0.81
UBR1-208ENST00000569066 GNEQ9Y223 722 aaKnown RBP9.99□□□□□ -0.81
UBR1-208ENST00000569066 CCDC102BQ68D86 513 aa9.99□□□□□ -0.81
UBR1-208ENST00000569066 PCDHGA11Q9Y5H2 935 aa9.99□□□□□ -0.81
UBR1-208ENST00000569066 ESPNB1AK53 854 aa9.98□□□□□ -0.81
UBR1-208ENST00000569066 LZTS3O60299 673 aaPredicted RBP9.98□□□□□ -0.81
UBR1-208ENST00000569066 ATP2B4P23634 1241 aa9.98□□□□□ -0.81
UBR1-208ENST00000569066 PSME1Q06323 249 aa9.98□□□□□ -0.81
UBR1-208ENST00000569066 SIX5Q8N196 739 aa9.98□□□□□ -0.81
UBR1-208ENST00000569066 GAS2L2Q8NHY3 880 aa9.98□□□□□ -0.81
UBR1-208ENST00000569066 STAU1O95793 577 aaKnown RBP9.98□□□□□ -0.81
UBR1-208ENST00000569066 CCDC27Q2M243 656 aa9.98□□□□□ -0.81
UBR1-208ENST00000569066 TRIM50Q86XT4 487 aa9.97□□□□□ -0.81
UBR1-208ENST00000569066 LARGE2Q8N3Y3 721 aa9.97□□□□□ -0.81
UBR1-208ENST00000569066 PRIMPOLQ96LW4 560 aa9.97□□□□□ -0.81
UBR1-208ENST00000569066 KCTD15Q96SI1 283 aaPredicted RBP9.97□□□□□ -0.81
UBR1-208ENST00000569066 ATP1A2P50993 1020 aa9.96□□□□□ -0.81
UBR1-208ENST00000569066 TRMT44Q8IYL2 757 aaKnown RBP9.96□□□□□ -0.81
UBR1-208ENST00000569066 KCNC4Q03721 635 aa9.95□□□□□ -0.82
UBR1-208ENST00000569066 B4GALNT3Q6L9W6 998 aa9.95□□□□□ -0.82
UBR1-208ENST00000569066 ZBTB24O43167 697 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms