RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SBNO2Q9Y2G9 1366 aa21.35■■□□□ 1.01
CLN3-236ENST00000568558 NFAT5O94916 1531 aa21.34■■□□□ 1.01
CLN3-236ENST00000568558 TTC21AQ8NDW8 1320 aa21.33■■□□□ 1.01
CLN3-236ENST00000568558 OVOS2A0A0G2JMS6 1433 aa21.33■■□□□ 1.01
CLN3-236ENST00000568558 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1.01
CLN3-236ENST00000568558 OVOS2Q6IE36 1432 aa21.33■■□□□ 1.01
CLN3-236ENST00000568558 AXIN2Q9Y2T1 843 aa21.32■■□□□ 1
CLN3-236ENST00000568558 KTN1Q86UP2 1357 aaKnown RBP21.32■■□□□ 1
CLN3-236ENST00000568558 WDR17Q8IZU2 1322 aa21.31■■□□□ 1
CLN3-236ENST00000568558 ABCC6O95255 1503 aa21.31■■□□□ 1
CLN3-236ENST00000568558 TOM1L2Q6ZVM7 507 aa21.31■■□□□ 1
CLN3-236ENST00000568558 ARHGEF25Q86VW2 580 aa21.31■■□□□ 1
CLN3-236ENST00000568558 KCNH5Q8NCM2 988 aa21.31■■□□□ 1
CLN3-236ENST00000568558 LTN1O94822 1766 aa21.31■■□□□ 1
CLN3-236ENST00000568558 C11orf95C9JLR9 678 aaPredicted RBP21.3■■□□□ 1
CLN3-236ENST00000568558 DDB1Q16531 1140 aa21.28■■□□□ 1
CLN3-236ENST00000568558 CD163L1Q9NR16 1453 aa21.27■■□□□ 1
CLN3-236ENST00000568558 SOX12O15370 315 aa21.27■■□□□ 1
CLN3-236ENST00000568558 CARD11Q9BXL7 1154 aa21.26■□□□□ 0.99
CLN3-236ENST00000568558 USP31Q70CQ4 1352 aa21.24■□□□□ 0.99
CLN3-236ENST00000568558 CDCA7Q9BWT1 371 aaPredicted RBP21.24■□□□□ 0.99
CLN3-236ENST00000568558 NBPF14Q5TI25 921 aa21.23■□□□□ 0.99
CLN3-236ENST00000568558 CARD10Q9BWT7 1032 aa21.23■□□□□ 0.99
CLN3-236ENST00000568558 TONSLQ96HA7 1378 aa21.23■□□□□ 0.99
CLN3-236ENST00000568558 BCL9O00512 1426 aa21.22■□□□□ 0.99
CLN3-236ENST00000568558 CSB-PGBD3P0DP91 1061 aa21.21■□□□□ 0.99
CLN3-236ENST00000568558 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.21■□□□□ 0.99
CLN3-236ENST00000568558 MARCH10Q8NA82 808 aaPredicted RBP21.21■□□□□ 0.99
CLN3-236ENST00000568558 CCDC7Q96M83 1385 aa21.21■□□□□ 0.99
CLN3-236ENST00000568558 PLSCR1O15162 318 aa21.2■□□□□ 0.98
CLN3-236ENST00000568558 NME9Q86XW9 330 aa21.19■□□□□ 0.98
CLN3-236ENST00000568558 BCL11BQ9C0K0 894 aaPredicted RBP21.19■□□□□ 0.98
CLN3-236ENST00000568558 TNS2Q63HR2 1409 aa21.19■□□□□ 0.98
CLN3-236ENST00000568558 EDC4Q6P2E9 1401 aaKnown RBP21.19■□□□□ 0.98
CLN3-236ENST00000568558 CASZ1Q86V15 1759 aa21.18■□□□□ 0.98
CLN3-236ENST00000568558 PTF1AQ7RTS3 328 aa21.18■□□□□ 0.98
CLN3-236ENST00000568558 TMC1Q8TDI8 760 aa21.18■□□□□ 0.98
CLN3-236ENST00000568558 NHSQ6T4R5 1651 aa21.18■□□□□ 0.98
CLN3-236ENST00000568558 HDGFL2Q7Z4V5 671 aaPredicted RBP21.17■□□□□ 0.98
CLN3-236ENST00000568558 SLC12A5Q9H2X9 1139 aa21.17■□□□□ 0.98
CLN3-236ENST00000568558 A0A1W2PP64 1363 aa21.16■□□□□ 0.98
CLN3-236ENST00000568558 FAM208AQ9UK61 1670 aaKnown RBP21.15■□□□□ 0.98
CLN3-236ENST00000568558 ERBB3P21860 1342 aa21.15■□□□□ 0.98
CLN3-236ENST00000568558 EXOC5O00471 708 aa21.14■□□□□ 0.97
CLN3-236ENST00000568558 PUS7Q96PZ0 661 aaKnown RBP21.14■□□□□ 0.97
CLN3-236ENST00000568558 TERF2IPQ9NYB0 399 aa21.13■□□□□ 0.97
CLN3-236ENST00000568558 ANO8Q9HCE9 1232 aaPredicted RBP21.12■□□□□ 0.97
CLN3-236ENST00000568558 SPON1Q9HCB6 807 aa21.11■□□□□ 0.97
CLN3-236ENST00000568558 BTAF1O14981 1849 aa21.11■□□□□ 0.97
CLN3-236ENST00000568558 KAT6BQ8WYB5 2073 aa21.1■□□□□ 0.97
CLN3-236ENST00000568558 KCNQ2O43526 872 aa21.1■□□□□ 0.97
CLN3-236ENST00000568558 PROM2Q8N271 834 aa21.1■□□□□ 0.97
CLN3-236ENST00000568558 TESK2Q96S53 571 aa21.1■□□□□ 0.97
CLN3-236ENST00000568558 NINLQ9Y2I6 1382 aa21.1■□□□□ 0.97
CLN3-236ENST00000568558 ANKRD24Q8TF21 1146 aa21.09■□□□□ 0.97
CLN3-236ENST00000568558 NLRP2Q9NX02 1062 aa21.09■□□□□ 0.97
CLN3-236ENST00000568558 RGPD2P0DJD1 1756 aa21.08■□□□□ 0.96
CLN3-236ENST00000568558 ST20-MTHFSA0A0A6YYL1 179 aa21.07■□□□□ 0.96
CLN3-236ENST00000568558 IL2RBP14784 551 aa21.07■□□□□ 0.96
CLN3-236ENST00000568558 TXNRD1Q16881 649 aa21.06■□□□□ 0.96
CLN3-236ENST00000568558 PAPPAQ13219 1627 aa21.05■□□□□ 0.96
CLN3-236ENST00000568558 PPP1R1BQ9UD71 204 aaPredicted RBP21.05■□□□□ 0.96
CLN3-236ENST00000568558 MYOM1P52179 1685 aa21.05■□□□□ 0.96
CLN3-236ENST00000568558 SLC24A1O60721 1099 aa21.03■□□□□ 0.96
CLN3-236ENST00000568558 IP6K1Q92551 441 aa21.03■□□□□ 0.96
CLN3-236ENST00000568558 ACSBG1Q96GR2 724 aa21.03■□□□□ 0.96
CLN3-236ENST00000568558 PDGFDQ9GZP0 370 aaPredicted RBP21.03■□□□□ 0.96
CLN3-236ENST00000568558 SHANK3Q9BYB0 1731 aa21.03■□□□□ 0.96
CLN3-236ENST00000568558 KIF20BQ96Q89 1820 aa21.02■□□□□ 0.96
CLN3-236ENST00000568558 ANKRD36BQ8N2N9 1353 aa21.01■□□□□ 0.95
CLN3-236ENST00000568558 STK32BQ9NY57 414 aa21.01■□□□□ 0.95
CLN3-236ENST00000568558 SLC15A2Q16348 729 aa21■□□□□ 0.95
CLN3-236ENST00000568558 COG3Q96JB2 828 aa21■□□□□ 0.95
CLN3-236ENST00000568558 DOT1LQ8TEK3 1739 aa21■□□□□ 0.95
CLN3-236ENST00000568558 MAP3K19Q56UN5 1328 aa20.99■□□□□ 0.95
CLN3-236ENST00000568558 ZBTB7AO95365 584 aa20.98■□□□□ 0.95
CLN3-236ENST00000568558 LTV1Q96GA3 475 aaPredicted RBP20.98■□□□□ 0.95
CLN3-236ENST00000568558 QSER1Q2KHR3 1735 aa20.98■□□□□ 0.95
CLN3-236ENST00000568558 USP47Q96K76 1375 aa20.97■□□□□ 0.95
CLN3-236ENST00000568558 HOXC9P31274 260 aa20.97■□□□□ 0.95
CLN3-236ENST00000568558 TRIM26Q12899 539 aaPredicted RBP20.97■□□□□ 0.95
CLN3-236ENST00000568558 FBLN1P23142 703 aa20.95■□□□□ 0.94
CLN3-236ENST00000568558 PTGER2P43116 358 aa20.95■□□□□ 0.94
CLN3-236ENST00000568558 RTL1A6NKG5 1358 aa20.95■□□□□ 0.94
CLN3-236ENST00000568558 LY75O60449 1722 aa20.95■□□□□ 0.94
CLN3-236ENST00000568558 AMPHP49418 695 aa20.94■□□□□ 0.94
CLN3-236ENST00000568558 TMF1P82094 1093 aa20.94■□□□□ 0.94
CLN3-236ENST00000568558 TUBGCP6Q96RT7 1819 aa20.94■□□□□ 0.94
CLN3-236ENST00000568558 ATF5Q9Y2D1 282 aaPredicted RBP20.93■□□□□ 0.94
CLN3-236ENST00000568558 MEGF6O75095 1541 aa20.93■□□□□ 0.94
CLN3-236ENST00000568558 DDX54Q8TDD1 881 aaKnown RBP20.92■□□□□ 0.94
CLN3-236ENST00000568558 FYB1O15117 783 aa20.91■□□□□ 0.94
CLN3-236ENST00000568558 MTFR1LQ9H019 292 aa20.91■□□□□ 0.94
CLN3-236ENST00000568558 DCAF8L1A6NGE4 600 aa20.9■□□□□ 0.94
CLN3-236ENST00000568558 YY1P25490 414 aa20.9■□□□□ 0.94
CLN3-236ENST00000568558 GGNBP2Q9H3C7 697 aa20.9■□□□□ 0.94
CLN3-236ENST00000568558 LRRC4BQ9NT99 713 aa20.9■□□□□ 0.94
CLN3-236ENST00000568558 COL24A1Q17RW2 1714 aa20.9■□□□□ 0.94
CLN3-236ENST00000568558 RRS1Q15050 365 aaKnown RBP20.89■□□□□ 0.93
CLN3-236ENST00000568558 ZNF827Q17R98 1081 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms