RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 MARF1Q9Y4F3 1742 aaKnown RBP11.46□□□□□ -0.57
SF3B3-212ENST00000568539 NFAT5O94916 1531 aa11.46□□□□□ -0.57
SF3B3-212ENST00000568539 SOX12O15370 315 aa11.46□□□□□ -0.57
SF3B3-212ENST00000568539 FBLN1P23142 703 aa11.46□□□□□ -0.57
SF3B3-212ENST00000568539 UPF1Q92900 1129 aaKnown RBP eCLIP11.46□□□□□ -0.57
SF3B3-212ENST00000568539 ANKRD26Q9UPS8 1709 aa11.46□□□□□ -0.58
SF3B3-212ENST00000568539 LRP6O75581 1613 aa11.46□□□□□ -0.58
SF3B3-212ENST00000568539 PPP2R1AP30153 589 aa11.45□□□□□ -0.58
SF3B3-212ENST00000568539 POLKQ9UBT6 870 aa11.45□□□□□ -0.58
SF3B3-212ENST00000568539 CRYBG1Q9Y4K1 1723 aa11.44□□□□□ -0.58
SF3B3-212ENST00000568539 MAP3K19Q56UN5 1328 aa11.44□□□□□ -0.58
SF3B3-212ENST00000568539 SPATA31A6Q5VVP1 1343 aa11.44□□□□□ -0.58
SF3B3-212ENST00000568539 MYBBP1AQ9BQG0 1328 aaKnown RBP11.44□□□□□ -0.58
SF3B3-212ENST00000568539 SHPRHQ149N8 1683 aa11.44□□□□□ -0.58
SF3B3-212ENST00000568539 PHRF1Q9P1Y6 1649 aaKnown RBP11.44□□□□□ -0.58
SF3B3-212ENST00000568539 SMG6Q86US8 1419 aaKnown RBP11.43□□□□□ -0.58
SF3B3-212ENST00000568539 CPDO75976 1380 aa11.43□□□□□ -0.58
SF3B3-212ENST00000568539 HAP1P54257 671 aaPredicted RBP11.43□□□□□ -0.58
SF3B3-212ENST00000568539 ZC3H6P61129 1189 aaKnown RBP11.43□□□□□ -0.58
SF3B3-212ENST00000568539 RRS1Q15050 365 aaKnown RBP11.43□□□□□ -0.58
SF3B3-212ENST00000568539 ARHGEF25Q86VW2 580 aa11.43□□□□□ -0.58
SF3B3-212ENST00000568539 EMILIN1Q9Y6C2 1016 aa11.43□□□□□ -0.58
SF3B3-212ENST00000568539 KIAA0232Q92628 1395 aa11.42□□□□□ -0.58
SF3B3-212ENST00000568539 MTHFSP49914 203 aa11.42□□□□□ -0.58
SF3B3-212ENST00000568539 MIER1Q8N108 512 aa11.42□□□□□ -0.58
SF3B3-212ENST00000568539 KIF24Q5T7B8 1368 aa11.41□□□□□ -0.58
SF3B3-212ENST00000568539 ABCA3Q99758 1704 aa11.41□□□□□ -0.58
SF3B3-212ENST00000568539 NUTM2BA6NNL0 878 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-212ENST00000568539 NUTM2EB1AL46 878 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-212ENST00000568539 NUTM2AQ8IVF1 878 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-212ENST00000568539 RTL1A6NKG5 1358 aa11.41□□□□□ -0.58
SF3B3-212ENST00000568539 PPM1GO15355 546 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-212ENST00000568539 AMPHP49418 695 aa11.4□□□□□ -0.58
SF3B3-212ENST00000568539 VASPP50552 380 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-212ENST00000568539 PRDM11Q9NQV5 511 aa11.4□□□□□ -0.58
SF3B3-212ENST00000568539 INSRP06213 1382 aa11.4□□□□□ -0.59
SF3B3-212ENST00000568539 FLT4P35916 1363 aa11.4□□□□□ -0.59
SF3B3-212ENST00000568539 CDK12Q9NYV4 1490 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-212ENST00000568539 ZBTB7CA1YPR0 619 aa11.39□□□□□ -0.59
SF3B3-212ENST00000568539 FAM83GA6ND36 823 aa11.39□□□□□ -0.59
SF3B3-212ENST00000568539 ADAMTS2O95450 1211 aa11.39□□□□□ -0.59
SF3B3-212ENST00000568539 HOXC9P31274 260 aa11.39□□□□□ -0.59
SF3B3-212ENST00000568539 CHRNA2Q15822 529 aa11.39□□□□□ -0.59
SF3B3-212ENST00000568539 IP6K1Q92551 441 aa11.39□□□□□ -0.59
SF3B3-212ENST00000568539 CCDC184Q52MB2 194 aa11.38□□□□□ -0.59
SF3B3-212ENST00000568539 HSP90AB2PQ58FF8 381 aa11.38□□□□□ -0.59
SF3B3-212ENST00000568539 AXIN2Q9Y2T1 843 aa11.38□□□□□ -0.59
SF3B3-212ENST00000568539 ABCC6O95255 1503 aa11.38□□□□□ -0.59
SF3B3-212ENST00000568539 COL3A1P02461 1466 aaPredicted RBP11.38□□□□□ -0.59
SF3B3-212ENST00000568539 PEAK1Q9H792 1746 aa11.38□□□□□ -0.59
SF3B3-212ENST00000568539 BLMP54132 1417 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-212ENST00000568539 CCER2I3L3R5 266 aa11.37□□□□□ -0.59
SF3B3-212ENST00000568539 CFAP53Q96M91 514 aa11.37□□□□□ -0.59
SF3B3-212ENST00000568539 LMO7Q8WWI1 1683 aa11.36□□□□□ -0.59
SF3B3-212ENST00000568539 EIF4A2Q14240 407 aaKnown RBP11.35□□□□□ -0.59
SF3B3-212ENST00000568539 MRS2Q9HD23 443 aa11.35□□□□□ -0.59
SF3B3-212ENST00000568539 CAMTA1Q9Y6Y1 1673 aa11.35□□□□□ -0.59
SF3B3-212ENST00000568539 ERBB3P21860 1342 aa11.35□□□□□ -0.59
SF3B3-212ENST00000568539 DIAPH1O60610 1272 aaKnown RBP11.34□□□□□ -0.59
SF3B3-212ENST00000568539 IL13P35225 146 aa11.34□□□□□ -0.59
SF3B3-212ENST00000568539 ANKRD24Q8TF21 1146 aa11.34□□□□□ -0.59
SF3B3-212ENST00000568539 C8orf37Q96NL8 207 aa11.34□□□□□ -0.59
SF3B3-212ENST00000568539 BTG4Q9NY30 223 aa11.34□□□□□ -0.59
SF3B3-212ENST00000568539 SLIT2O94813 1529 aa11.34□□□□□ -0.59
SF3B3-212ENST00000568539 COL18A1P39060 1754 aa11.33□□□□□ -0.59
SF3B3-212ENST00000568539 COL14A1Q05707 1796 aaKnown RBP11.33□□□□□ -0.59
SF3B3-212ENST00000568539 COL5A2P05997 1499 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-212ENST00000568539 MEX3CQ5U5Q3 659 aaKnown RBP11.33□□□□□ -0.6
SF3B3-212ENST00000568539 FNBP4Q8N3X1 1017 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-212ENST00000568539 LTV1Q96GA3 475 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-212ENST00000568539 LTN1O94822 1766 aa11.33□□□□□ -0.6
SF3B3-212ENST00000568539 PNISRQ8TF01 805 aaKnown RBP11.32□□□□□ -0.6
SF3B3-212ENST00000568539 NGLY1Q96IV0 654 aa11.32□□□□□ -0.6
SF3B3-212ENST00000568539 RGS12O14924 1447 aa11.32□□□□□ -0.6
SF3B3-212ENST00000568539 WDR17Q8IZU2 1322 aa11.32□□□□□ -0.6
SF3B3-212ENST00000568539 BCL9LQ86UU0 1499 aa11.32□□□□□ -0.6
SF3B3-212ENST00000568539 EP400Q96L91 3159 aa11.31□□□□□ -0.6
SF3B3-212ENST00000568539 NUDCQ9Y266 331 aa11.31□□□□□ -0.6
SF3B3-212ENST00000568539 SSUH2Q9Y2M2 353 aa11.31□□□□□ -0.6
SF3B3-212ENST00000568539 IGSF1Q8N6C5 1336 aa11.31□□□□□ -0.6
SF3B3-212ENST00000568539 CSB-PGBD3P0DP91 1061 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 EVA1CP58658 441 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 NBPF6Q5VWK0 638 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 LARP1Q6PKG0 1096 aaKnown RBP11.3□□□□□ -0.6
SF3B3-212ENST00000568539 NBPF4Q96M43 638 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 EYA1Q99502 592 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 STRN4Q9NRL3 753 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 AFF2P51816 1311 aa11.3□□□□□ -0.6
SF3B3-212ENST00000568539 MAP2P11137 1827 aaKnown RBP11.3□□□□□ -0.6
SF3B3-212ENST00000568539 NCAPD2Q15021 1401 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 U2SURPO15042 1029 aaKnown RBP11.29□□□□□ -0.6
SF3B3-212ENST00000568539 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 WDR43Q15061 677 aaKnown RBP eCLIP11.29□□□□□ -0.6
SF3B3-212ENST00000568539 SPDYE2Q495Y8 402 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 IFNLR1Q8IU57 520 aaPredicted RBP11.29□□□□□ -0.6
SF3B3-212ENST00000568539 UNC5CLQ8IV45 518 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 USP21Q9UK80 565 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 PLCH1Q4KWH8 1693 aa11.29□□□□□ -0.6
SF3B3-212ENST00000568539 CRB1P82279 1406 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms