RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 DDB1Q16531 1140 aa19.78■□□□□ 0.76
CLN3-235ENST00000568497 GPR162Q16538 588 aa19.78■□□□□ 0.76
CLN3-235ENST00000568497 NUDT16Q96DE0 195 aaKnown RBP19.78■□□□□ 0.76
CLN3-235ENST00000568497 MTFR1LQ9H019 292 aa19.78■□□□□ 0.76
CLN3-235ENST00000568497 COL5A2P05997 1499 aaPredicted RBP19.78■□□□□ 0.76
CLN3-235ENST00000568497 ABTB2Q8N961 1025 aa19.77■□□□□ 0.76
CLN3-235ENST00000568497 CRB1P82279 1406 aa19.76■□□□□ 0.75
CLN3-235ENST00000568497 POLR3AO14802 1390 aaPredicted RBP19.76■□□□□ 0.75
CLN3-235ENST00000568497 SLC15A2Q16348 729 aa19.76■□□□□ 0.75
CLN3-235ENST00000568497 PROM2Q8N271 834 aa19.76■□□□□ 0.75
CLN3-235ENST00000568497 USP19O94966 1318 aa19.75■□□□□ 0.75
CLN3-235ENST00000568497 TXNRD1Q16881 649 aa19.74■□□□□ 0.75
CLN3-235ENST00000568497 PELP1Q8IZL8 1130 aaKnown RBP19.74■□□□□ 0.75
CLN3-235ENST00000568497 ARXQ96QS3 562 aa19.74■□□□□ 0.75
CLN3-235ENST00000568497 CARD11Q9BXL7 1154 aa19.74■□□□□ 0.75
CLN3-235ENST00000568497 KLHL34Q8N239 644 aa19.73■□□□□ 0.75
CLN3-235ENST00000568497 ACEP12821 1306 aa19.73■□□□□ 0.75
CLN3-235ENST00000568497 TOM1L2Q6ZVM7 507 aa19.72■□□□□ 0.75
CLN3-235ENST00000568497 CDK19Q9BWU1 502 aa19.72■□□□□ 0.75
CLN3-235ENST00000568497 AKAP12Q02952 1782 aa19.72■□□□□ 0.75
CLN3-235ENST00000568497 CENPJQ9HC77 1338 aaPredicted RBP19.72■□□□□ 0.75
CLN3-235ENST00000568497 SGIP1Q9BQI5 828 aa19.71■□□□□ 0.75
CLN3-235ENST00000568497 CABP2Q9NPB3 220 aa19.71■□□□□ 0.75
CLN3-235ENST00000568497 BCL9O00512 1426 aa19.7■□□□□ 0.74
CLN3-235ENST00000568497 PLEKHG3A1L390 1219 aa19.7■□□□□ 0.74
CLN3-235ENST00000568497 GCP02774 474 aa19.7■□□□□ 0.74
CLN3-235ENST00000568497 NLRP13Q86W25 1043 aa19.7■□□□□ 0.74
CLN3-235ENST00000568497 QRICH2Q9H0J4 1663 aa19.7■□□□□ 0.74
CLN3-235ENST00000568497 CEP350Q5VT06 3117 aa19.69■□□□□ 0.74
CLN3-235ENST00000568497 CCDC61Q9Y6R9 512 aa19.69■□□□□ 0.74
CLN3-235ENST00000568497 MARCH10Q8NA82 808 aaPredicted RBP19.68■□□□□ 0.74
CLN3-235ENST00000568497 TOPAZ1Q8N9V7 1692 aa19.68■□□□□ 0.74
CLN3-235ENST00000568497 MAP3K5Q99683 1374 aa19.67■□□□□ 0.74
CLN3-235ENST00000568497 WNK3Q9BYP7 1800 aa19.67■□□□□ 0.74
CLN3-235ENST00000568497 SRPK2P78362 688 aaKnown RBP19.65■□□□□ 0.74
CLN3-235ENST00000568497 CLSPNQ9HAW4 1339 aa19.65■□□□□ 0.74
CLN3-235ENST00000568497 SHANK3Q9BYB0 1731 aa19.65■□□□□ 0.74
CLN3-235ENST00000568497 CDCA7Q9BWT1 371 aaPredicted RBP19.64■□□□□ 0.73
CLN3-235ENST00000568497 AATKQ6ZMQ8 1374 aa19.64■□□□□ 0.73
CLN3-235ENST00000568497 BRD4O60885 1362 aaPredicted RBP19.61■□□□□ 0.73
CLN3-235ENST00000568497 ST20-MTHFSA0A0A6YYL1 179 aa19.61■□□□□ 0.73
CLN3-235ENST00000568497 WDR17Q8IZU2 1322 aa19.6■□□□□ 0.73
CLN3-235ENST00000568497 CSB-PGBD3P0DP91 1061 aa19.59■□□□□ 0.73
CLN3-235ENST00000568497 POLD1P28340 1107 aa19.59■□□□□ 0.73
CLN3-235ENST00000568497 NLRP6P59044 892 aa19.59■□□□□ 0.73
CLN3-235ENST00000568497 EXOC5O00471 708 aa19.58■□□□□ 0.72
CLN3-235ENST00000568497 SLIT3O75094 1523 aa19.57■□□□□ 0.72
CLN3-235ENST00000568497 ACSBG1Q96GR2 724 aa19.57■□□□□ 0.72
CLN3-235ENST00000568497 PPIP5K1Q6PFW1 1433 aa19.57■□□□□ 0.72
CLN3-235ENST00000568497 COL18A1P39060 1754 aa19.57■□□□□ 0.72
CLN3-235ENST00000568497 USP47Q96K76 1375 aa19.57■□□□□ 0.72
CLN3-235ENST00000568497 NHSQ6T4R5 1651 aa19.56■□□□□ 0.72
CLN3-235ENST00000568497 PAPPAQ13219 1627 aa19.56■□□□□ 0.72
CLN3-235ENST00000568497 ZNF827Q17R98 1081 aa19.56■□□□□ 0.72
CLN3-235ENST00000568497 CABP1Q9NZU7 370 aa19.56■□□□□ 0.72
CLN3-235ENST00000568497 GOLGB1Q14789 3259 aaKnown RBP19.56■□□□□ 0.72
CLN3-235ENST00000568497 AXIN2Q9Y2T1 843 aa19.55■□□□□ 0.72
CLN3-235ENST00000568497 NLGN2Q8NFZ4 835 aa19.54■□□□□ 0.72
CLN3-235ENST00000568497 TESK2Q96S53 571 aa19.54■□□□□ 0.72
CLN3-235ENST00000568497 CARD10Q9BWT7 1032 aa19.54■□□□□ 0.72
CLN3-235ENST00000568497 EVC2Q86UK5 1308 aa19.53■□□□□ 0.72
CLN3-235ENST00000568497 TNS2Q63HR2 1409 aa19.53■□□□□ 0.72
CLN3-235ENST00000568497 ATP10DQ9P241 1426 aa19.53■□□□□ 0.72
CLN3-235ENST00000568497 HSPA6P17066 643 aa19.53■□□□□ 0.72
CLN3-235ENST00000568497 SOX12O15370 315 aa19.52■□□□□ 0.72
CLN3-235ENST00000568497 GRIN3BO60391 1043 aa19.52■□□□□ 0.72
CLN3-235ENST00000568497 GPBP1L1Q9HC44 474 aaPredicted RBP19.52■□□□□ 0.72
CLN3-235ENST00000568497 RGPD5Q99666 1765 aa19.52■□□□□ 0.71
CLN3-235ENST00000568497 CPSF1Q10570 1443 aaKnown RBP19.51■□□□□ 0.71
CLN3-235ENST00000568497 TIMELESSQ9UNS1 1208 aa19.51■□□□□ 0.71
CLN3-235ENST00000568497 KAT6BQ8WYB5 2073 aa19.51■□□□□ 0.71
CLN3-235ENST00000568497 YBX3P16989 372 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLN3-235ENST00000568497 SLC16A10Q8TF71 515 aa19.5■□□□□ 0.71
CLN3-235ENST00000568497 BTAF1O14981 1849 aa19.5■□□□□ 0.71
CLN3-235ENST00000568497 USP6P35125 1406 aa19.5■□□□□ 0.71
CLN3-235ENST00000568497 TMC1Q8TDI8 760 aa19.49■□□□□ 0.71
CLN3-235ENST00000568497 ZNF526Q8TF50 670 aaPredicted RBP19.49■□□□□ 0.71
CLN3-235ENST00000568497 CCDC7Q96M83 1385 aa19.48■□□□□ 0.71
CLN3-235ENST00000568497 ARHGEF25Q86VW2 580 aa19.48■□□□□ 0.71
CLN3-235ENST00000568497 SLC12A5Q9H2X9 1139 aa19.48■□□□□ 0.71
CLN3-235ENST00000568497 PIK3C2AO00443 1686 aa19.47■□□□□ 0.71
CLN3-235ENST00000568497 HSPA5P11021 654 aaKnown RBP19.47■□□□□ 0.71
CLN3-235ENST00000568497 POLR3GLQ9BT43 218 aa19.47■□□□□ 0.71
CLN3-235ENST00000568497 LRRC4BQ9NT99 713 aa19.47■□□□□ 0.71
CLN3-235ENST00000568497 TFCP2L1Q9NZI6 479 aa19.46■□□□□ 0.71
CLN3-235ENST00000568497 PNPLA7Q6ZV29 1317 aa19.46■□□□□ 0.71
CLN3-235ENST00000568497 ABCC6O95255 1503 aa19.46■□□□□ 0.71
CLN3-235ENST00000568497 KCNH5Q8NCM2 988 aa19.45■□□□□ 0.7
CLN3-235ENST00000568497 COL24A1Q17RW2 1714 aa19.45■□□□□ 0.7
CLN3-235ENST00000568497 QSER1Q2KHR3 1735 aa19.45■□□□□ 0.7
CLN3-235ENST00000568497 AKT1S1Q96B36 256 aa19.44■□□□□ 0.7
CLN3-235ENST00000568497 SBNO2Q9Y2G9 1366 aa19.42■□□□□ 0.7
CLN3-235ENST00000568497 TUBGCP6Q96RT7 1819 aa19.41■□□□□ 0.7
CLN3-235ENST00000568497 MSH5O43196 834 aa19.41■□□□□ 0.7
CLN3-235ENST00000568497 SLC27A3Q5K4L6 730 aa19.4■□□□□ 0.7
CLN3-235ENST00000568497 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLN3-235ENST00000568497 NLRP2Q9NX02 1062 aa19.4■□□□□ 0.7
CLN3-235ENST00000568497 CD163L1Q9NR16 1453 aa19.4■□□□□ 0.7
CLN3-235ENST00000568497 KCNQ4P56696 695 aa19.39■□□□□ 0.69
CLN3-235ENST00000568497 IL2RBP14784 551 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms