RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 NLRP13Q86W25 1043 aa13.39□□□□□ -0.27
SF3B3-211ENST00000568291 TCP11L2Q8N4U5 519 aa13.39□□□□□ -0.27
SF3B3-211ENST00000568291 CRB1P82279 1406 aa13.39□□□□□ -0.27
SF3B3-211ENST00000568291 CLSPNQ9HAW4 1339 aa13.39□□□□□ -0.27
SF3B3-211ENST00000568291 SOX12O15370 315 aa13.38□□□□□ -0.27
SF3B3-211ENST00000568291 NLRP6P59044 892 aa13.38□□□□□ -0.27
SF3B3-211ENST00000568291 PDE3BQ13370 1112 aa13.38□□□□□ -0.27
SF3B3-211ENST00000568291 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.38□□□□□ -0.27
SF3B3-211ENST00000568291 CAMKK2Q96RR4 588 aa13.38□□□□□ -0.27
SF3B3-211ENST00000568291 APBA3O96018 575 aa13.37□□□□□ -0.27
SF3B3-211ENST00000568291 GCP02774 474 aa13.37□□□□□ -0.27
SF3B3-211ENST00000568291 MON2Q7Z3U7 1717 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 USP47Q96K76 1375 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 TIMELESSQ9UNS1 1208 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 THRAP3Q9Y2W1 955 aaKnown RBP13.36□□□□□ -0.27
SF3B3-211ENST00000568291 OVOS2A0A0G2JMS6 1433 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 OVOS2A0A0J9YW53 1432 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 OVOS2Q6IE36 1432 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 TTC21BQ7Z4L5 1316 aa13.36□□□□□ -0.27
SF3B3-211ENST00000568291 CPSF1Q10570 1443 aaKnown RBP13.35□□□□□ -0.27
SF3B3-211ENST00000568291 AATKQ6ZMQ8 1374 aa13.34□□□□□ -0.27
SF3B3-211ENST00000568291 NME9Q86XW9 330 aa13.34□□□□□ -0.27
SF3B3-211ENST00000568291 USP54Q70EL1 1684 aa13.34□□□□□ -0.27
SF3B3-211ENST00000568291 KTN1Q86UP2 1357 aaKnown RBP13.33□□□□□ -0.27
SF3B3-211ENST00000568291 POLR3GLQ9BT43 218 aa13.33□□□□□ -0.28
SF3B3-211ENST00000568291 ZNF692Q9BU19 519 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-211ENST00000568291 NFAT5O94916 1531 aa13.33□□□□□ -0.28
SF3B3-211ENST00000568291 SBNO2Q9Y2G9 1366 aa13.32□□□□□ -0.28
SF3B3-211ENST00000568291 ABCC6O95255 1503 aa13.32□□□□□ -0.28
SF3B3-211ENST00000568291 LTN1O94822 1766 aa13.32□□□□□ -0.28
SF3B3-211ENST00000568291 CASZ1Q86V15 1759 aa13.31□□□□□ -0.28
SF3B3-211ENST00000568291 TMF1P82094 1093 aa13.31□□□□□ -0.28
SF3B3-211ENST00000568291 HDGFL2Q7Z4V5 671 aaPredicted RBP13.31□□□□□ -0.28
SF3B3-211ENST00000568291 C11orf95C9JLR9 678 aaPredicted RBP13.3□□□□□ -0.28
SF3B3-211ENST00000568291 HSPA5P11021 654 aaKnown RBP13.3□□□□□ -0.28
SF3B3-211ENST00000568291 TOM1L2Q6ZVM7 507 aa13.3□□□□□ -0.28
SF3B3-211ENST00000568291 WDR17Q8IZU2 1322 aa13.3□□□□□ -0.28
SF3B3-211ENST00000568291 CD163L1Q9NR16 1453 aa13.29□□□□□ -0.28
SF3B3-211ENST00000568291 FBLN1P23142 703 aa13.29□□□□□ -0.28
SF3B3-211ENST00000568291 NBPF14Q5TI25 921 aa13.29□□□□□ -0.28
SF3B3-211ENST00000568291 TERF2IPQ9NYB0 399 aa13.29□□□□□ -0.28
SF3B3-211ENST00000568291 DDB1Q16531 1140 aa13.28□□□□□ -0.28
SF3B3-211ENST00000568291 AXIN2Q9Y2T1 843 aa13.28□□□□□ -0.28
SF3B3-211ENST00000568291 TTC21AQ8NDW8 1320 aa13.28□□□□□ -0.28
SF3B3-211ENST00000568291 A0A1W2PP64 1363 aa13.28□□□□□ -0.28
SF3B3-211ENST00000568291 NHSQ6T4R5 1651 aa13.28□□□□□ -0.28
SF3B3-211ENST00000568291 TNS2Q63HR2 1409 aa13.26□□□□□ -0.29
SF3B3-211ENST00000568291 ARHGEF25Q86VW2 580 aa13.26□□□□□ -0.29
SF3B3-211ENST00000568291 PUS7Q96PZ0 661 aaKnown RBP13.26□□□□□ -0.29
SF3B3-211ENST00000568291 BCL9O00512 1426 aa13.25□□□□□ -0.29
SF3B3-211ENST00000568291 CSB-PGBD3P0DP91 1061 aa13.25□□□□□ -0.29
SF3B3-211ENST00000568291 EIF4G2P78344 907 aaKnown RBP eCLIP13.25□□□□□ -0.29
SF3B3-211ENST00000568291 KCNH5Q8NCM2 988 aa13.25□□□□□ -0.29
SF3B3-211ENST00000568291 KAT6BQ8WYB5 2073 aa13.25□□□□□ -0.29
SF3B3-211ENST00000568291 MYOM1P52179 1685 aa13.24□□□□□ -0.29
SF3B3-211ENST00000568291 CDCA7Q9BWT1 371 aaPredicted RBP13.24□□□□□ -0.29
SF3B3-211ENST00000568291 SPON1Q9HCB6 807 aa13.24□□□□□ -0.29
SF3B3-211ENST00000568291 ANO8Q9HCE9 1232 aaPredicted RBP13.24□□□□□ -0.29
SF3B3-211ENST00000568291 CCDC7Q96M83 1385 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 NINLQ9Y2I6 1382 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 BTAF1O14981 1849 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 PTF1AQ7RTS3 328 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 MARCH10Q8NA82 808 aaPredicted RBP13.23□□□□□ -0.29
SF3B3-211ENST00000568291 CARD10Q9BWT7 1032 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 CARD14Q9BXL6 1004 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 BCL11BQ9C0K0 894 aaPredicted RBP13.23□□□□□ -0.29
SF3B3-211ENST00000568291 GGNBP2Q9H3C7 697 aa13.23□□□□□ -0.29
SF3B3-211ENST00000568291 PPP1R1BQ9UD71 204 aaPredicted RBP13.23□□□□□ -0.29
SF3B3-211ENST00000568291 FAM208AQ9UK61 1670 aaKnown RBP13.23□□□□□ -0.29
SF3B3-211ENST00000568291 PLSCR1O15162 318 aa13.22□□□□□ -0.29
SF3B3-211ENST00000568291 SLC24A1O60721 1099 aa13.22□□□□□ -0.29
SF3B3-211ENST00000568291 KCNQ2O43526 872 aa13.21□□□□□ -0.29
SF3B3-211ENST00000568291 CDCA8Q53HL2 280 aa13.21□□□□□ -0.29
SF3B3-211ENST00000568291 CNKSR2Q8WXI2 1034 aa13.21□□□□□ -0.29
SF3B3-211ENST00000568291 EDC4Q6P2E9 1401 aaKnown RBP13.21□□□□□ -0.3
SF3B3-211ENST00000568291 PAPPAQ13219 1627 aa13.21□□□□□ -0.3
SF3B3-211ENST00000568291 USP31Q70CQ4 1352 aa13.2□□□□□ -0.3
SF3B3-211ENST00000568291 FYB1O15117 783 aa13.2□□□□□ -0.3
SF3B3-211ENST00000568291 COG3Q96JB2 828 aa13.2□□□□□ -0.3
SF3B3-211ENST00000568291 ANKRD36BQ8N2N9 1353 aa13.2□□□□□ -0.3
SF3B3-211ENST00000568291 ERBB3P21860 1342 aa13.19□□□□□ -0.3
SF3B3-211ENST00000568291 LTV1Q96GA3 475 aaPredicted RBP13.19□□□□□ -0.3
SF3B3-211ENST00000568291 RRS1Q15050 365 aaKnown RBP13.18□□□□□ -0.3
SF3B3-211ENST00000568291 EXOC5O00471 708 aa13.17□□□□□ -0.3
SF3B3-211ENST00000568291 RGPD2P0DJD1 1756 aa13.17□□□□□ -0.3
SF3B3-211ENST00000568291 DOT1LQ8TEK3 1739 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 TUBGCP6Q96RT7 1819 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 YY1P25490 414 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 HOXD11P31277 338 aaPredicted RBP13.16□□□□□ -0.3
SF3B3-211ENST00000568291 PROM2Q8N271 834 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 PANK3Q9H999 370 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 QSER1Q2KHR3 1735 aa13.16□□□□□ -0.3
SF3B3-211ENST00000568291 ZBTB7AO95365 584 aa13.15□□□□□ -0.3
SF3B3-211ENST00000568291 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
SF3B3-211ENST00000568291 ANKRD24Q8TF21 1146 aa13.15□□□□□ -0.3
SF3B3-211ENST00000568291 PDGFDQ9GZP0 370 aaPredicted RBP13.15□□□□□ -0.3
SF3B3-211ENST00000568291 STK32BQ9NY57 414 aa13.15□□□□□ -0.3
SF3B3-211ENST00000568291 SHANK3Q9BYB0 1731 aa13.15□□□□□ -0.3
SF3B3-211ENST00000568291 MAP3K19Q56UN5 1328 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms