RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 RGPD4Q7Z3J3 1758 aa17.45■□□□□ 0.38
CLK3-222ENST00000568232 GCP02774 474 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 SLC4A2P04920 1241 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 SLC15A2Q16348 729 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 SGIP1Q9BQI5 828 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 CDK19Q9BWU1 502 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 STK32BQ9NY57 414 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 KDM2AQ9Y2K7 1162 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 USP19O94966 1318 aa17.44■□□□□ 0.38
CLK3-222ENST00000568232 POLR3AO14802 1390 aaPredicted RBP17.43■□□□□ 0.38
CLK3-222ENST00000568232 TXNRD1Q16881 649 aa17.43■□□□□ 0.38
CLK3-222ENST00000568232 MARCH10Q8NA82 808 aaPredicted RBP17.43■□□□□ 0.38
CLK3-222ENST00000568232 CRB1P82279 1406 aa17.43■□□□□ 0.38
CLK3-222ENST00000568232 SBF2Q86WG5 1849 aa17.42■□□□□ 0.38
CLK3-222ENST00000568232 MTFR1LQ9H019 292 aa17.42■□□□□ 0.38
CLK3-222ENST00000568232 LRRC37A3O60309 1634 aa17.41■□□□□ 0.38
CLK3-222ENST00000568232 ITSN1Q15811 1721 aa17.41■□□□□ 0.38
CLK3-222ENST00000568232 GOLGB1Q14789 3259 aaKnown RBP17.41■□□□□ 0.38
CLK3-222ENST00000568232 GIGYF1O75420 1035 aaPredicted RBP17.4■□□□□ 0.38
CLK3-222ENST00000568232 ARXQ96QS3 562 aa17.4■□□□□ 0.38
CLK3-222ENST00000568232 PLEKHG3A1L390 1219 aa17.39■□□□□ 0.37
CLK3-222ENST00000568232 TOM1L2Q6ZVM7 507 aa17.39■□□□□ 0.37
CLK3-222ENST00000568232 NLRP13Q86W25 1043 aa17.39■□□□□ 0.37
CLK3-222ENST00000568232 CCDC61Q9Y6R9 512 aa17.39■□□□□ 0.37
CLK3-222ENST00000568232 GPR162Q16538 588 aa17.38■□□□□ 0.37
CLK3-222ENST00000568232 DCAF11Q8TEB1 546 aa17.38■□□□□ 0.37
CLK3-222ENST00000568232 CHD4Q14839 1912 aa17.38■□□□□ 0.37
CLK3-222ENST00000568232 AXIN2Q9Y2T1 843 aa17.35■□□□□ 0.37
CLK3-222ENST00000568232 BCL9O00512 1426 aa17.34■□□□□ 0.37
CLK3-222ENST00000568232 AATKQ6ZMQ8 1374 aa17.34■□□□□ 0.37
CLK3-222ENST00000568232 TOPAZ1Q8N9V7 1692 aa17.34■□□□□ 0.37
CLK3-222ENST00000568232 ARHGEF28Q8N1W1 1705 aaKnown RBP17.33■□□□□ 0.37
CLK3-222ENST00000568232 MAP3K5Q99683 1374 aa17.32■□□□□ 0.36
CLK3-222ENST00000568232 PELP1Q8IZL8 1130 aaKnown RBP17.32■□□□□ 0.36
CLK3-222ENST00000568232 KLHL34Q8N239 644 aa17.32■□□□□ 0.36
CLK3-222ENST00000568232 WDR17Q8IZU2 1322 aa17.31■□□□□ 0.36
CLK3-222ENST00000568232 NLRP6P59044 892 aa17.31■□□□□ 0.36
CLK3-222ENST00000568232 ZNF827Q17R98 1081 aa17.3■□□□□ 0.36
CLK3-222ENST00000568232 CDCA7Q9BWT1 371 aaPredicted RBP17.3■□□□□ 0.36
CLK3-222ENST00000568232 EXOC5O00471 708 aa17.29■□□□□ 0.36
CLK3-222ENST00000568232 ACSBG1Q96GR2 724 aa17.29■□□□□ 0.36
CLK3-222ENST00000568232 PPIP5K1Q6PFW1 1433 aa17.29■□□□□ 0.36
CLK3-222ENST00000568232 AKAP12Q02952 1782 aa17.28■□□□□ 0.36
CLK3-222ENST00000568232 WNK3Q9BYP7 1800 aa17.27■□□□□ 0.36
CLK3-222ENST00000568232 SRPK2P78362 688 aaKnown RBP17.27■□□□□ 0.36
CLK3-222ENST00000568232 CABP2Q9NPB3 220 aa17.27■□□□□ 0.36
CLK3-222ENST00000568232 SHANK3Q9BYB0 1731 aa17.27■□□□□ 0.35
CLK3-222ENST00000568232 SLIT3O75094 1523 aa17.26■□□□□ 0.35
CLK3-222ENST00000568232 COL18A1P39060 1754 aa17.26■□□□□ 0.35
CLK3-222ENST00000568232 CSB-PGBD3P0DP91 1061 aa17.26■□□□□ 0.35
CLK3-222ENST00000568232 NLGN2Q8NFZ4 835 aa17.26■□□□□ 0.35
CLK3-222ENST00000568232 CARD10Q9BWT7 1032 aa17.26■□□□□ 0.35
CLK3-222ENST00000568232 LRRC4BQ9NT99 713 aa17.25■□□□□ 0.35
CLK3-222ENST00000568232 SOX12O15370 315 aa17.24■□□□□ 0.35
CLK3-222ENST00000568232 CABP1Q9NZU7 370 aa17.24■□□□□ 0.35
CLK3-222ENST00000568232 PAPPAQ13219 1627 aa17.24■□□□□ 0.35
CLK3-222ENST00000568232 ARHGEF25Q86VW2 580 aa17.23■□□□□ 0.35
CLK3-222ENST00000568232 USP6P35125 1406 aa17.22■□□□□ 0.35
CLK3-222ENST00000568232 CPSF1Q10570 1443 aaKnown RBP17.22■□□□□ 0.35
CLK3-222ENST00000568232 YBX3P16989 372 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLK3-222ENST00000568232 STAC3Q96MF2 364 aa17.22■□□□□ 0.35
CLK3-222ENST00000568232 BRD4O60885 1362 aaPredicted RBP17.21■□□□□ 0.35
CLK3-222ENST00000568232 POLD1P28340 1107 aa17.21■□□□□ 0.35
CLK3-222ENST00000568232 NHSQ6T4R5 1651 aa17.2■□□□□ 0.34
CLK3-222ENST00000568232 NBPF1Q3BBV0 1214 aa17.2■□□□□ 0.34
CLK3-222ENST00000568232 AKT1S1Q96B36 256 aa17.2■□□□□ 0.34
CLK3-222ENST00000568232 SPINK5Q9NQ38 1064 aaPredicted RBP17.2■□□□□ 0.34
CLK3-222ENST00000568232 TNS2Q63HR2 1409 aa17.2■□□□□ 0.34
CLK3-222ENST00000568232 SLC16A10Q8TF71 515 aa17.19■□□□□ 0.34
CLK3-222ENST00000568232 RGPD5Q99666 1765 aa17.18■□□□□ 0.34
CLK3-222ENST00000568232 PIK3C2AO00443 1686 aa17.18■□□□□ 0.34
CLK3-222ENST00000568232 PNPLA7Q6ZV29 1317 aa17.18■□□□□ 0.34
CLK3-222ENST00000568232 CCDC7Q96M83 1385 aa17.17■□□□□ 0.34
CLK3-222ENST00000568232 KCNQ4P56696 695 aa17.17■□□□□ 0.34
CLK3-222ENST00000568232 ATP10DQ9P241 1426 aa17.17■□□□□ 0.34
CLK3-222ENST00000568232 HSPA6P17066 643 aa17.16■□□□□ 0.34
CLK3-222ENST00000568232 RAB3GAP2Q9H2M9 1393 aa17.15■□□□□ 0.34
CLK3-222ENST00000568232 TRPM1Q7Z4N2 1603 aa17.15■□□□□ 0.34
CLK3-222ENST00000568232 GRIN3BO60391 1043 aa17.15■□□□□ 0.34
CLK3-222ENST00000568232 KCNH5Q8NCM2 988 aa17.15■□□□□ 0.34
CLK3-222ENST00000568232 CENPJQ9HC77 1338 aaPredicted RBP17.15■□□□□ 0.34
CLK3-222ENST00000568232 ZNF526Q8TF50 670 aaPredicted RBP17.14■□□□□ 0.33
CLK3-222ENST00000568232 GPBP1L1Q9HC44 474 aaPredicted RBP17.14■□□□□ 0.33
CLK3-222ENST00000568232 TFCP2L1Q9NZI6 479 aa17.14■□□□□ 0.33
CLK3-222ENST00000568232 TTC21BQ7Z4L5 1316 aa17.14■□□□□ 0.33
CLK3-222ENST00000568232 BTAF1O14981 1849 aa17.14■□□□□ 0.33
CLK3-222ENST00000568232 ABCC6O95255 1503 aa17.13■□□□□ 0.33
CLK3-222ENST00000568232 NLRP2Q9NX02 1062 aa17.13■□□□□ 0.33
CLK3-222ENST00000568232 COL24A1Q17RW2 1714 aa17.11■□□□□ 0.33
CLK3-222ENST00000568232 IL2RBP14784 551 aa17.11■□□□□ 0.33
CLK3-222ENST00000568232 SLC27A3Q5K4L6 730 aa17.1■□□□□ 0.33
CLK3-222ENST00000568232 NFAT5O94916 1531 aa17.1■□□□□ 0.33
CLK3-222ENST00000568232 QRICH2Q9H0J4 1663 aa17.08■□□□□ 0.32
CLK3-222ENST00000568232 ERBB3P21860 1342 aa17.08■□□□□ 0.32
CLK3-222ENST00000568232 MSL1Q68DK7 614 aa17.07■□□□□ 0.32
CLK3-222ENST00000568232 DDX54Q8TDD1 881 aaKnown RBP17.07■□□□□ 0.32
CLK3-222ENST00000568232 ZNF692Q9BU19 519 aaPredicted RBP17.07■□□□□ 0.32
CLK3-222ENST00000568232 QSER1Q2KHR3 1735 aa17.07■□□□□ 0.32
CLK3-222ENST00000568232 TUBGCP6Q96RT7 1819 aa17.06■□□□□ 0.32
CLK3-222ENST00000568232 COL23A1Q86Y22 540 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms