RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 RRS1Q15050 365 aaKnown RBP26.85■■□□□ 1.89
CLN3-225ENST00000566824 MAP3K19Q56UN5 1328 aa26.84■■□□□ 1.89
CLN3-225ENST00000566824 COL5A2P05997 1499 aaPredicted RBP26.84■■□□□ 1.89
CLN3-225ENST00000566824 VPS72Q15906 364 aa26.84■■□□□ 1.89
CLN3-225ENST00000566824 PEAK1Q9H792 1746 aa26.84■■□□□ 1.89
CLN3-225ENST00000566824 MAP2P11137 1827 aaKnown RBP26.83■■□□□ 1.89
CLN3-225ENST00000566824 RXRBP28702 533 aa26.83■■□□□ 1.89
CLN3-225ENST00000566824 GJD4Q96KN9 370 aaPredicted RBP26.82■■□□□ 1.88
CLN3-225ENST00000566824 TNNT2P45379 298 aaPredicted RBP26.81■■□□□ 1.88
CLN3-225ENST00000566824 RBM6P78332 1123 aaKnown RBP26.81■■□□□ 1.88
CLN3-225ENST00000566824 LARP1Q6PKG0 1096 aaKnown RBP26.81■■□□□ 1.88
CLN3-225ENST00000566824 CCDC9Q9Y3X0 531 aaKnown RBP26.8■■□□□ 1.88
CLN3-225ENST00000566824 ABCC6O95255 1503 aa26.79■■□□□ 1.88
CLN3-225ENST00000566824 EVA1CP58658 441 aa26.79■■□□□ 1.88
CLN3-225ENST00000566824 CNGB1Q14028 1251 aaPredicted RBP26.79■■□□□ 1.88
CLN3-225ENST00000566824 NSD2O96028 1365 aa26.79■■□□□ 1.88
CLN3-225ENST00000566824 EMILIN1Q9Y6C2 1016 aa26.78■■□□□ 1.88
CLN3-225ENST00000566824 SPATA31A5Q5VU36 1347 aa26.78■■□□□ 1.88
CLN3-225ENST00000566824 SPATA31A7Q8IWB4 1347 aa26.78■■□□□ 1.88
CLN3-225ENST00000566824 CC2D1BQ5T0F9 858 aaKnown RBP26.77■■□□□ 1.88
CLN3-225ENST00000566824 MORC1Q86VD1 984 aa26.76■■□□□ 1.87
CLN3-225ENST00000566824 IP6K1Q92551 441 aa26.76■■□□□ 1.87
CLN3-225ENST00000566824 RGS12O14924 1447 aa26.76■■□□□ 1.87
CLN3-225ENST00000566824 HOXC9P31274 260 aa26.75■■□□□ 1.87
CLN3-225ENST00000566824 DDX10Q13206 875 aaKnown RBP26.75■■□□□ 1.87
CLN3-225ENST00000566824 SPATA31A1Q5TZJ5 1347 aa26.74■■□□□ 1.87
CLN3-225ENST00000566824 AMPHP49418 695 aa26.74■■□□□ 1.87
CLN3-225ENST00000566824 RGPD2P0DJD1 1756 aa26.74■■□□□ 1.87
CLN3-225ENST00000566824 POLKQ9UBT6 870 aa26.73■■□□□ 1.87
CLN3-225ENST00000566824 WDR17Q8IZU2 1322 aa26.72■■□□□ 1.87
CLN3-225ENST00000566824 USP35Q9P2H5 1018 aa26.72■■□□□ 1.87
CLN3-225ENST00000566824 ANKRD24Q8TF21 1146 aa26.71■■□□□ 1.87
CLN3-225ENST00000566824 LTV1Q96GA3 475 aaPredicted RBP26.71■■□□□ 1.87
CLN3-225ENST00000566824 BRWD3Q6RI45 1802 aa26.71■■□□□ 1.87
CLN3-225ENST00000566824 CDK12Q9NYV4 1490 aaPredicted RBP26.71■■□□□ 1.87
CLN3-225ENST00000566824 CRB1P82279 1406 aa26.71■■□□□ 1.87
CLN3-225ENST00000566824 NPC1L1Q9UHC9 1359 aa26.71■■□□□ 1.87
CLN3-225ENST00000566824 ERBB3P21860 1342 aa26.7■■□□□ 1.87
CLN3-225ENST00000566824 FAM98CQ17RN3 349 aaKnown RBP26.7■■□□□ 1.87
CLN3-225ENST00000566824 HSP90AB2PQ58FF8 381 aa26.7■■□□□ 1.87
CLN3-225ENST00000566824 BLMP54132 1417 aaPredicted RBP26.7■■□□□ 1.86
CLN3-225ENST00000566824 RTL1A6NKG5 1358 aa26.7■■□□□ 1.86
CLN3-225ENST00000566824 ZNF316A6NFI3 1004 aaPredicted RBP26.69■■□□□ 1.86
CLN3-225ENST00000566824 PPM1GO15355 546 aaPredicted RBP26.68■■□□□ 1.86
CLN3-225ENST00000566824 CSB-PGBD3P0DP91 1061 aa26.68■■□□□ 1.86
CLN3-225ENST00000566824 TOM1L2Q6ZVM7 507 aa26.68■■□□□ 1.86
CLN3-225ENST00000566824 THSD7AQ9UPZ6 1657 aa26.67■■□□□ 1.86
CLN3-225ENST00000566824 ONECUT3O60422 494 aaPredicted RBP26.66■■□□□ 1.86
CLN3-225ENST00000566824 FLT4P35916 1363 aa26.66■■□□□ 1.86
CLN3-225ENST00000566824 WNK3Q9BYP7 1800 aa26.66■■□□□ 1.86
CLN3-225ENST00000566824 SEPT12Q8IYM1 358 aa26.65■■□□□ 1.86
CLN3-225ENST00000566824 INSRP06213 1382 aa26.64■■□□□ 1.86
CLN3-225ENST00000566824 SMG6Q86US8 1419 aaKnown RBP26.64■■□□□ 1.85
CLN3-225ENST00000566824 TCP11L2Q8N4U5 519 aa26.64■■□□□ 1.85
CLN3-225ENST00000566824 CARD10Q9BWT7 1032 aa26.64■■□□□ 1.85
CLN3-225ENST00000566824 KIF24Q5T7B8 1368 aa26.63■■□□□ 1.85
CLN3-225ENST00000566824 NLRP2Q9NX02 1062 aa26.63■■□□□ 1.85
CLN3-225ENST00000566824 FAM208AQ9UK61 1670 aaKnown RBP26.63■■□□□ 1.85
CLN3-225ENST00000566824 BARGINQ6ZT62 677 aa26.61■■□□□ 1.85
CLN3-225ENST00000566824 A0A0G2JS52 829 aa26.59■■□□□ 1.85
CLN3-225ENST00000566824 MYT1Q01538 1121 aa26.59■■□□□ 1.85
CLN3-225ENST00000566824 NBPF6Q5VWK0 638 aa26.58■■□□□ 1.85
CLN3-225ENST00000566824 NBPF4Q96M43 638 aa26.58■■□□□ 1.85
CLN3-225ENST00000566824 THRAP3Q9Y2W1 955 aaKnown RBP26.58■■□□□ 1.85
CLN3-225ENST00000566824 PARP4Q9UKK3 1724 aaKnown RBP26.57■■□□□ 1.84
CLN3-225ENST00000566824 DISP2A7MBM2 1401 aa26.57■■□□□ 1.84
CLN3-225ENST00000566824 MTHFSP49914 203 aa26.57■■□□□ 1.84
CLN3-225ENST00000566824 USHBP1Q8N6Y0 703 aa26.57■■□□□ 1.84
CLN3-225ENST00000566824 LRRC37A3O60309 1634 aa26.55■■□□□ 1.84
CLN3-225ENST00000566824 EIF4A2Q14240 407 aaKnown RBP26.55■■□□□ 1.84
CLN3-225ENST00000566824 FAM182BQ5T319 152 aa26.52■■□□□ 1.84
CLN3-225ENST00000566824 PARD3Q8TEW0 1356 aa26.52■■□□□ 1.84
CLN3-225ENST00000566824 PPP2R1AP30153 589 aa26.51■■□□□ 1.83
CLN3-225ENST00000566824 EYA1Q99502 592 aa26.5■■□□□ 1.83
CLN3-225ENST00000566824 KRT27Q7Z3Y8 459 aa26.49■■□□□ 1.83
CLN3-225ENST00000566824 MEGF6O75095 1541 aa26.48■■□□□ 1.83
CLN3-225ENST00000566824 COL3A1P02461 1466 aaPredicted RBP26.48■■□□□ 1.83
CLN3-225ENST00000566824 NCAPD2Q15021 1401 aa26.47■■□□□ 1.83
CLN3-225ENST00000566824 RGPD1P0DJD0 1748 aa26.47■■□□□ 1.83
CLN3-225ENST00000566824 IL2RBP14784 551 aa26.46■■□□□ 1.83
CLN3-225ENST00000566824 IL13P35225 146 aa26.46■■□□□ 1.83
CLN3-225ENST00000566824 EP400Q96L91 3159 aa26.45■■□□□ 1.82
CLN3-225ENST00000566824 SOCS7O14512 581 aa26.44■■□□□ 1.82
CLN3-225ENST00000566824 SHANK3Q9BYB0 1731 aa26.44■■□□□ 1.82
CLN3-225ENST00000566824 DDB1Q16531 1140 aa26.43■■□□□ 1.82
CLN3-225ENST00000566824 CDCA7Q9BWT1 371 aaPredicted RBP26.43■■□□□ 1.82
CLN3-225ENST00000566824 IGSF1Q8N6C5 1336 aa26.42■■□□□ 1.82
CLN3-225ENST00000566824 TNS2Q63HR2 1409 aa26.41■■□□□ 1.82
CLN3-225ENST00000566824 MARCH10Q8NA82 808 aaPredicted RBP26.41■■□□□ 1.82
CLN3-225ENST00000566824 PDE3BQ13370 1112 aa26.4■■□□□ 1.82
CLN3-225ENST00000566824 AEBP1Q8IUX7 1158 aa26.4■■□□□ 1.82
CLN3-225ENST00000566824 OVOS2A0A0G2JMS6 1433 aa26.4■■□□□ 1.82
CLN3-225ENST00000566824 EXOC5O00471 708 aa26.39■■□□□ 1.82
CLN3-225ENST00000566824 RALBP1Q15311 655 aa26.39■■□□□ 1.81
CLN3-225ENST00000566824 DIAPH1O60610 1272 aaKnown RBP26.38■■□□□ 1.81
CLN3-225ENST00000566824 UPF1Q92900 1129 aaKnown RBP eCLIP26.38■■□□□ 1.81
CLN3-225ENST00000566824 PRKRIP1Q9H875 184 aaPredicted RBP26.37■■□□□ 1.81
CLN3-225ENST00000566824 RAPGEF4Q8WZA2 1011 aa26.36■■□□□ 1.81
CLN3-225ENST00000566824 SBF2Q86WG5 1849 aa26.35■■□□□ 1.81
CLN3-225ENST00000566824 PKD1L3Q7Z443 1732 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms